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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF HUMAN FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE DOMAIN IN COMPLEX WITH PYRAZOLAMINOPYRIMIDINE 2

Authors :   R. A. Norman, T. Klein

Date :   12 Nov 13 (Deposition) - 18 Dec 13 (Release) - 16 Jul 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.19

Chains :   Asym./Biol. Unit : A,B

Keywords :   Kinase, Atp Binding, Phosphorylation, Trans-Membrane, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Klein, J. Tucker, G. A. Holdgate, R. A. Norman, A. L. Breeze
Fgfr1 Kinase Inhibitors: Close Regioisomers Adopt Divergent Binding Modes And Display Distinct Biophysical Signatures.
Acs Med Chem Lett V. 5 166 2014
PubMed-ID: 24900792 | Reference-DOI: 10.1021/ML4004205

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1
	Chains	:	A, B
	EC Number	:	2.7.10.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	KINASE DOMAIN (UNP RESIDUES 458-765)
	Gene	:	FGFR1, BFGFR, CEK, FGFBR, FLG, FLT2, HBGFR
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FGFR-1, BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1, BFGFR, BFGF-R-1, FMS-LIKE TYROSINE KINASE 2, FLT-2, N-SAM, PROTO-ONCOGENE C- FGR

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 8)

No.	Name	Count	Type	Full Name
1	2K7	2	Ligand/Ion	N~4~-{3-[2-(3,4-DIMETHOXYPHENYL)ETHYL]-1H-PYRAZOL-5-YL}-N~2~-[(3-METHYL-1,2-OXAZOL-5-YL)METHYL]PYRIMIDINE-2,4-DIAMINE
2	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:570 , ARG A:627 , THR A:657 , ASN A:659 , ARG A:661 , TRP A:666 , HOH A:915 , HOH A:990	BINDING SITE FOR RESIDUE SO4 A 801
2	AC2	SOFTWARE	GLY A:539 , LYS A:540 , LYS A:618 , HOH A:987	BINDING SITE FOR RESIDUE SO4 A 802
3	AC3	SOFTWARE	ALA A:615 , THR A:746 , PHE A:747 , LYS A:748 , HOH A:933	BINDING SITE FOR RESIDUE EDO A 803
4	AC4	SOFTWARE	TRP A:684 , TYR A:701 , ARG A:718 , MET A:719 , TRP A:737 , HOH A:919	BINDING SITE FOR RESIDUE EDO A 804
5	AC5	SOFTWARE	LEU A:484 , ALA A:512 , GLU A:531 , GLU A:562 , TYR A:563 , ALA A:564 , GLY A:567 , ARG A:627 , LEU A:630 , ASP A:641	BINDING SITE FOR RESIDUE 2K7 A 805
6	AC6	SOFTWARE	ARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:901	BINDING SITE FOR RESIDUE SO4 B 801
7	AC7	SOFTWARE	TYR B:701 , LEU B:713 , ARG B:718 , MET B:719 , TRP B:737 , HOH B:963	BINDING SITE FOR RESIDUE EDO B 802
8	AC8	SOFTWARE	LEU B:484 , ALA B:512 , LYS B:514 , GLU B:531 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , ARG B:627 , LEU B:630 , ASP B:641	BINDING SITE FOR RESIDUE 2K7 B 803

(no "SS Bond" information available for 4NKA)

(no "Cis Peptide Bond" information available for 4NKA)

(no "SAP(SNP)/Variant" information available for 4NKA)

(no "PROSITE Motif" information available for 4NKA)

(no "Exon" information available for 4NKA)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4nkaa_ A: Fibroblast growth factor receptor 1                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeee..eeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nka A 464 ELPEDPRWELPRDRLVLGKPLGEQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   473       483  ||   497       507       517       527       537       547       557       567       577 ||    599       609       619       629       639   ||  656       666       676       686       696       706       716       726       736       746       756         
                                                486|                                                                                     579|                                                643|                                                                                                                  
                                                 491                                                                                      592                                                 651

Chain B from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4nkab_ B: Fibroblast growth factor receptor 1                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhh.eeeeeeeee...eeeeeeeee.......eeeeeeeee....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nka B 458 AGVSEYELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   467       477       487       497    || 509       519       529       539       549       559       569       579|      602       612       622       632       642|      658       668       678       688       698       708       718       728       738       748       758       
                                                                      502|                                                                       579|                                              642|                                                                                                                    
                                                                       505                                                                        593                                               649

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: Protein kinases, catalytic subunit (1977)

Protein domain: Fibroblast growth factor receptor 1 (15)

Human (Homo sapiens) [TaxId: 9606] (15)

1a	d4nkaa_	A:
1b	d4nkab_	B:

(no "CATH Domain" information available for 4NKA)

(no "Pfam Domain" information available for 4NKA)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4nka)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 2)

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Gene Ontology (99, 99)

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