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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE DOMAIN IN COMPLEX WITH COMPOUND 8
 
Authors :  R. A. Norman, J. Breed, D. Ogg
Date :  14 May 12  (Deposition) - 06 Jun 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase, Atp Binding, Phosphorylation, Trans-Membrane, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Norman, A. K. Schott, D. M. Andrews, J. Breed, K. M. Foote, A. P. Garner, D. Ogg, J. P. Orme, J. H. Pink, K. Roberts, D. A. Rudge, A. P. Thomas, A. G. Leach
Protein-Ligand Crystal Structures Can Guide The Design Of Selective Inhibitors Of The Fgfr Tyrosine Kinase.
J. Med. Chem. V. 55 5003 2012
PubMed-ID: 22612866  |  Reference-DOI: 10.1021/JM3004043

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1
    Chains: A, B
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN (UNP RESIDUES 458-765)
    Gene: FGFR1, BFGFR, CEK, FGFBR, FLG, FLT2, HBGFR
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-1, BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1, BFGFR, BFGF-R-1, FMS-LIKE TYROSINE KINASE 2, FLT-2, N-SAM, PROTO-ONCOGENE C- FGR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
10S92Ligand/Ion5-BROMO-N~2~-[(3-METHYL-1,2-OXAZOL-5-YL)METHYL]-N~4~-[3-(2-PHENYLETHYL)-1H-PYRAZOL-5-YL]PYRIMIDINE-2,4-DIAMINE
2EDO10Ligand/Ion1,2-ETHANEDIOL
3SO44Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:470 , TRP A:471 , GLU A:472 , LEU A:500 , LEU A:548 , EDO A:807BINDING SITE FOR RESIDUE SO4 A 801
02AC2SOFTWAREGLY A:539 , LYS A:540 , LYS A:618 , HOH A:957BINDING SITE FOR RESIDUE SO4 A 802
03AC3SOFTWAREARG A:470 , LYS A:618 , HIS A:679 , HOH A:963BINDING SITE FOR RESIDUE EDO A 803
04AC4SOFTWAREGLN A:574 , ARG A:577 , GLY A:697 , GLY A:698 , SER A:699BINDING SITE FOR RESIDUE EDO A 804
05AC5SOFTWAREALA A:615 , PHE A:747 , LYS A:748 , HOH A:974BINDING SITE FOR RESIDUE EDO A 805
06AC6SOFTWAREARG A:470 , SO4 A:801BINDING SITE FOR RESIDUE EDO A 807
07AC7SOFTWARELEU A:484 , GLU A:486 , GLY A:487 , VAL A:492 , ALA A:512 , LYS A:514 , GLU A:531 , VAL A:561 , GLU A:562 , TYR A:563 , ALA A:564 , SER A:565 , GLY A:567 , ARG A:627 , LEU A:630 , HOH A:969 , HOH A:993BINDING SITE FOR RESIDUE 0S9 A 808
08AC8SOFTWAREARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:902BINDING SITE FOR RESIDUE SO4 B 801
09AC9SOFTWARESER B:597 , VAL B:601 , PHE B:694 , ASN B:724 , CYS B:725 , THR B:726 , LEU B:729BINDING SITE FOR RESIDUE SO4 B 802
10BC1SOFTWAREGLN B:574 , ASN B:659 , ARG B:661BINDING SITE FOR RESIDUE EDO B 804
11BC2SOFTWAREPRO B:578BINDING SITE FOR RESIDUE EDO B 805
12BC3SOFTWAREPRO B:466 , ILE B:529 , GLU B:533 , THR B:552BINDING SITE FOR RESIDUE EDO B 806
13BC4SOFTWAREGLY A:703 , VAL A:704 , GLU B:708BINDING SITE FOR RESIDUE EDO B 807
14BC5SOFTWARELEU B:484 , GLU B:486 , ALA B:512 , LYS B:514 , GLU B:531 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , SER B:565 , GLY B:567 , LEU B:630 , PHE B:642 , HOH B:960 , HOH B:981BINDING SITE FOR RESIDUE 0S9 B 808

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F65)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val B:460 -Ser B:461

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F65)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F65)

(-) Exons   (0, 0)

(no "Exon" information available for 4F65)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4f65a_ A: Fibroblast growth factor receptor 1                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeeeee..eeeeeeeee.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f65 A 464 ELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   473       483       493       505       515       525       535       545       555       565       575   ||  596       606       616       626       636     ||656       666       676       686       696       706       716       726       736       746       756         
                                                               501|                                                                        579|                                                642|                                                                                                                
                                                                504                                                                         591                                                 653                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4f65b_ B: Fibroblast growth factor receptor 1                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhh.eeeeeeeeee..eeeeeeeee......eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f65 B 460 VSEYELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN 763
                                   469       479       489       499 ||    512       522       532       542       552       562       572     ||597       607       617       627       637    || 654       664       674       684       694       704       714       724       734       744       754         
                                                                   501|                                                                      578|                                             642|                                                                                                                 
                                                                    505                                                                       594                                              650
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F65)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F65)

(-) Gene Ontology  (99, 99)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Val B:460 - Ser B:461   [ RasMol ]  
 

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  2.7.10.1
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 Related Entries

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        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f63 4f64 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4rwl 4uwb 4uwc 4uwy 4v01 4v04 4v05 4wun 4zsa 5a46 5a4c 5am6 5am7 5b7v 5ew8 5flf 5uq0 5ur1 5vnd

(-) Related Entries Specified in the PDB File

4f63 4f64