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(-) Description

Title :  CRYSTAL STRUCTURE OF ACTIN IN COMPLEX WITH SYNTHETIC APLC TAIL ANALOGUE GC04 [N-{(1E,4R,5R,7E,9S,10S,11S)-4,10-DIMETHOXY-11-[(2S,4S, 5S)-2-(4-METHOXYPHENYL)-5-METHYL-1,3-DIOXAN-4-YL]-5,9-DIMETHYL-6-OXODODECA-1,7-DIEN-1-YL}-N-METHYLFORMAMIDE]
 
Authors :  J. H. Pereira, C. Petchprayoon, N. W. Moriarty, S. J. Fink, G. Cecere, I. P. D. Adams, G. Marriott
Date :  11 Apr 13  (Deposition) - 01 Oct 14  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cell Motility, Gelsolin, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Pereira, C. Petchprayoon, A. C. Hoepker, N. W. Moriarty, S. J. Fink, G. Cecere, I. Paterson, P. D. Adams, G. Marriott
Structural And Biochemical Studies Of Actin In Complex With Synthetic Macrolide Tail Analogues.
Chemmedchem V. 9 2286 2014
PubMed-ID: 25047814  |  Reference-DOI: 10.1002/CMDC.201402150

(-) Compounds

Molecule 1 - ACTIN, ALPHA SKELETAL MUSCLE
    Chains: A, B
    Organism Common: EUROPEAN RABBIT,JAPANESE WHITE RABBIT,DOMESTIC RABBIT,RABBITS
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: ALPHA-ACTIN-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
11PO2Ligand/IonN-{(1E,4R,5R,7E,9S,10S,11S)-4,10-DIMETHOXY-11-[(2S,4S,5S)-2-(4-METHOXYPHENYL)-5-METHYL-1,3-DIOXAN-4-YL]-5,9-DIMETHYL-6-OXODODECA-1,7-DIEN-1-YL}-N-METHYLFORMAMIDE
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
3CA2Ligand/IonCALCIUM ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
11PO1Ligand/IonN-{(1E,4R,5R,7E,9S,10S,11S)-4,10-DIMETHOXY-11-[(2S,4S,5S)-2-(4-METHOXYPHENYL)-5-METHYL-1,3-DIOXAN-4-YL]-5,9-DIMETHYL-6-OXODODECA-1,7-DIEN-1-YL}-N-METHYLFORMAMIDE
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
11PO1Ligand/IonN-{(1E,4R,5R,7E,9S,10S,11S)-4,10-DIMETHOXY-11-[(2S,4S,5S)-2-(4-METHOXYPHENYL)-5-METHYL-1,3-DIOXAN-4-YL]-5,9-DIMETHYL-6-OXODODECA-1,7-DIEN-1-YL}-N-METHYLFORMAMIDE
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3CA-1Ligand/IonCALCIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREADP A:402 , HOH A:504 , HOH A:509BINDING SITE FOR RESIDUE CA A 401
2AC2SOFTWAREGLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:401 , HOH A:501 , HOH A:504 , HOH A:509 , HOH A:529BINDING SITE FOR RESIDUE ADP A 402
3AC3SOFTWARETYR A:143 , ALA A:144 , GLY A:146 , GLY A:168 , TYR A:169 , ILE A:345 , LEU A:349 , THR A:351BINDING SITE FOR RESIDUE 1PO A 403
4AC4SOFTWAREGLN B:137 , ADP B:402BINDING SITE FOR RESIDUE CA B 401
5AC5SOFTWAREGLY B:13 , SER B:14 , GLY B:15 , LEU B:16 , LYS B:18 , GLY B:156 , ASP B:157 , ARG B:210 , LYS B:213 , GLU B:214 , GLY B:302 , THR B:303 , MET B:305 , LYS B:336 , CA B:401 , HOH B:508BINDING SITE FOR RESIDUE ADP B 402
6AC6SOFTWAREVAL B:139 , TYR B:143 , ALA B:144 , GLY B:146 , GLY B:168 , TYR B:169 , ILE B:345 , LEU B:349 , THR B:351BINDING SITE FOR RESIDUE 1PO B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K43)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4K43)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K43)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K43)

(-) Exons   (0, 0)

(no "Exon" information available for 4K43)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...eeeeee.......eeee..eee.....eehhhhhhh....eee..hhhhh..hhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeeehhhhhhhhhh...eeeeee....eeeeeee..ee.hhhheee..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhh....eeee.....eeee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhh.hhhhhhhhhhhhhh.......ee......hhhhhhhhhhhh...hhhhheehhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4k43 A   5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKC 374
                                    14        24        34   ||   54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
                                                            38|                                                                                                                                                                                                                                                                                                                                     
                                                             49                                                                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...eeeeee.......eeee..eee.....eehhhhhhh....eee..hhhhh..hhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeeehhhhhhhhhh...eeeeee....eeeeeee..ee.hhhheee..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhh....eeee.....eeee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhh.hhhhhhhhhhhhhh.......ee......hhhhhhhhhhhh...hhhhheehhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4k43 B   5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKC 374
                                    14        24        34   ||   54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
                                                            38|                                                                                                                                                                                                                                                                                                                                     
                                                             49
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K43)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K43)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K43)

(-) Gene Ontology  (17, 17)

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  4k43
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  ACTS_RABIT | P68135
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACTS_RABIT | P68135: 1alm 1atn 1eqy 1esv 1h1v 1ijj 1j6z 1kxp 1lcu 1lot 1m8q 1ma9 1mvw 1nwk 1o18 1o19 1o1a 1o1b 1o1c 1o1d 1o1e 1o1f 1o1g 1p8z 1qz5 1qz6 1rdw 1rfq 1rgi 1s22 1sqk 1t44 1uy5 1wua 1y64 1yxq 2a3z 2a40 2a41 2a42 2a5x 2asm 2aso 2asp 2d1k 2ff3 2ff6 2fxu 2gwj 2gwk 2hmp 2pav 2pbd 2q0r 2q0u 2q1n 2q31 2q36 2q97 2v51 2v52 2vcp 2vyp 2w49 2w4u 2y83 2yje 2yjf 2zwh 3b5u 3buz 3cjb 3cjc 3daw 3ffk 3g37 3hbt 3j4k 3j8a 3j8i 3j8j 3j8k 3jbi 3jbj 3jbk 3m1f 3m3n 3m6g 3mfp 3mn5 3sjh 3tpq 3tu5 3u8x 3u9z 3ue5 4a7f 4a7h 4a7l 4a7n 4b1v 4b1w 4b1x 4b1y 4b1z 4eah 4gy2 4h03 4h0t 4h0v 4h0x 4h0y 4k41 4k42 4pkg 4pkh 4pki 4pl8 4v0u 4wyb 4z94 5h53 5jlf 5kg8

(-) Related Entries Specified in the PDB File

1qz5 4k41 4k42