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Biol. Unit 1
Info
Asym.Unit (287 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S378Q MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date
:
22 Jul 09 (Deposition) - 04 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of S378Q Mutant Ttha0252 From Thermus Thermophilus Hb8
To Be Published
[
close entry info
]
Hetero Components
(2, 23)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
1c: CITRATE ANION (FLCc)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
2
SO4
22
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: DC5 (SOFTWARE)
27: EC2 (SOFTWARE)
28: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SO4 A:451
BINDING SITE FOR RESIDUE SO4 A 432
02
AC2
SOFTWARE
PRO A:172 , ASP A:173 , SER A:269 , GLU A:270
BINDING SITE FOR RESIDUE SO4 A 433
03
AC3
SOFTWARE
HIS A:238 , HIS A:240 , ARG A:241 , ARG B:368
BINDING SITE FOR RESIDUE SO4 A 434
04
AC4
SOFTWARE
TYR A:189 , ARG A:227 , GLY A:340 , TYR A:341 , GLN A:378 , GLY A:379
BINDING SITE FOR RESIDUE SO4 A 435
05
AC5
SOFTWARE
HIS A:61 , PHE A:223 , VAL A:225 , GLU A:226 , ARG A:227
BINDING SITE FOR RESIDUE SO4 A 436
06
AC6
SOFTWARE
LYS A:298 , ASN A:301 , HIS A:323 , LYS A:326 , HIS A:327
BINDING SITE FOR RESIDUE SO4 A 437
07
AC7
SOFTWARE
ARG A:73 , ARG C:424
BINDING SITE FOR RESIDUE SO4 A 438
08
AC8
SOFTWARE
GLY A:318 , GLY A:319 , HOH A:459
BINDING SITE FOR RESIDUE SO4 A 439
09
AC9
SOFTWARE
ARG A:24
BINDING SITE FOR RESIDUE SO4 A 440
10
BC1
SOFTWARE
ARG A:354
BINDING SITE FOR RESIDUE SO4 A 441
11
BC2
SOFTWARE
PRO A:243 , ARG A:244 , ARG B:302
BINDING SITE FOR RESIDUE SO4 A 442
12
BC3
SOFTWARE
MET A:1 , ARG A:2
BINDING SITE FOR RESIDUE SO4 A 443
13
BC4
SOFTWARE
ARG A:24 , LEU A:129 , GLY A:130
BINDING SITE FOR RESIDUE SO4 A 444
14
BC5
SOFTWARE
ASP A:250 , SER A:251 , PRO A:252 , ALA A:311 , GLY A:312 , GLY A:319 , ARG A:320 , HOH A:489
BINDING SITE FOR RESIDUE SO4 A 445
15
BC6
SOFTWARE
ARG A:25 , PHE A:47 , ASP A:48
BINDING SITE FOR RESIDUE SO4 A 446
16
BC7
SOFTWARE
LYS A:99 , PRO A:252 , ARG A:256
BINDING SITE FOR RESIDUE SO4 A 447
17
BC8
SOFTWARE
ARG A:2 , GLY A:426 , GLY A:428
BINDING SITE FOR RESIDUE SO4 A 448
18
BC9
SOFTWARE
PRO A:366 , ARG A:368
BINDING SITE FOR RESIDUE SO4 A 449
19
CC1
SOFTWARE
THR A:222 , PHE A:223 , ALA A:224 , SER A:313 , GLY A:314
BINDING SITE FOR RESIDUE SO4 A 450
20
CC2
SOFTWARE
ARG A:84 , LEU A:88 , SO4 A:432 , HOH A:483 , GLU D:270
BINDING SITE FOR RESIDUE SO4 A 451
21
CC3
SOFTWARE
PRO A:304 , ARG A:333
BINDING SITE FOR RESIDUE SO4 A 452
22
CC4
SOFTWARE
HIS A:293 , HOH A:464
BINDING SITE FOR RESIDUE SO4 A 453
23
CC5
SOFTWARE
GLY A:279 , LYS A:280 , ASN A:281 , ARG A:284 , HOH A:504 , HIS B:293
BINDING SITE FOR RESIDUE FLC A 454
24
CC6
SOFTWARE
ASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , ZN A:456
BINDING SITE FOR RESIDUE ZN A 455
25
CC7
SOFTWARE
HIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , ZN A:455
BINDING SITE FOR RESIDUE ZN A 456
26
DC5
SOFTWARE
ARG A:244 , LYS B:298 , ASN B:301 , HIS B:323 , LYS B:326 , HIS B:327 , LEU B:361
BINDING SITE FOR RESIDUE SO4 B 438
27
EC2
SOFTWARE
LYS A:280 , ARG B:359 , GLY B:362
BINDING SITE FOR RESIDUE SO4 B 444
28
FC5
SOFTWARE
LEU A:407 , LYS A:411 , LEU B:407 , LYS B:411 , ALA B:414
BINDING SITE FOR RESIDUE FLC B 456
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3idza_ (A:)
1b: SCOP_d3idzb_ (B:)
1c: SCOP_d3idzc_ (C:)
1d: SCOP_d3idzd_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3idza_
A:
1b
d3idzb_
B:
1c
d3idzc_
C:
1d
d3idzd_
D:
[
close SCOP info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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