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3IDZ
Biol. Unit 2
Info
Asym.Unit (287 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S378Q MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date
:
22 Jul 09 (Deposition) - 04 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of S378Q Mutant Ttha0252 From Thermus Thermophilus Hb8
To Be Published
[
close entry info
]
Hetero Components
(2, 25)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
1c: CITRATE ANION (FLCc)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
2
Ligand/Ion
CITRATE ANION
2
SO4
23
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC3 (SOFTWARE)
02: BC2 (SOFTWARE)
03: CC5 (SOFTWARE)
04: CC8 (SOFTWARE)
05: CC9 (SOFTWARE)
06: DC1 (SOFTWARE)
07: DC2 (SOFTWARE)
08: DC3 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC5 (SOFTWARE)
11: DC6 (SOFTWARE)
12: DC7 (SOFTWARE)
13: DC8 (SOFTWARE)
14: DC9 (SOFTWARE)
15: EC1 (SOFTWARE)
16: EC2 (SOFTWARE)
17: EC3 (SOFTWARE)
18: EC4 (SOFTWARE)
19: EC5 (SOFTWARE)
20: EC6 (SOFTWARE)
21: EC7 (SOFTWARE)
22: EC8 (SOFTWARE)
23: EC9 (SOFTWARE)
24: FC1 (SOFTWARE)
25: FC2 (SOFTWARE)
26: FC3 (SOFTWARE)
27: FC4 (SOFTWARE)
28: FC5 (SOFTWARE)
29: FC6 (SOFTWARE)
30: FC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
HIS A:238 , HIS A:240 , ARG A:241 , ARG B:368
BINDING SITE FOR RESIDUE SO4 A 434
02
BC2
SOFTWARE
PRO A:243 , ARG A:244 , ARG B:302
BINDING SITE FOR RESIDUE SO4 A 442
03
CC5
SOFTWARE
GLY A:279 , LYS A:280 , ASN A:281 , ARG A:284 , HOH A:504 , HIS B:293
BINDING SITE FOR RESIDUE FLC A 454
04
CC8
SOFTWARE
ARG B:24
BINDING SITE FOR RESIDUE SO4 B 432
05
CC9
SOFTWARE
ARG B:84 , ARG B:263 , HOH B:460
BINDING SITE FOR RESIDUE SO4 B 433
06
DC1
SOFTWARE
LYS B:210
BINDING SITE FOR RESIDUE SO4 B 434
07
DC2
SOFTWARE
ARG B:354
BINDING SITE FOR RESIDUE SO4 B 435
08
DC3
SOFTWARE
ARG B:368
BINDING SITE FOR RESIDUE SO4 B 436
09
DC4
SOFTWARE
TYR B:189 , ARG B:227 , GLY B:340 , TYR B:341 , GLY B:379 , HIS B:380
BINDING SITE FOR RESIDUE SO4 B 437
10
DC5
SOFTWARE
ARG A:244 , LYS B:298 , ASN B:301 , HIS B:323 , LYS B:326 , HIS B:327 , LEU B:361
BINDING SITE FOR RESIDUE SO4 B 438
11
DC6
SOFTWARE
LEU B:387
BINDING SITE FOR RESIDUE SO4 B 439
12
DC7
SOFTWARE
THR B:222 , PHE B:223 , ALA B:224 , SER B:313 , GLY B:314 , HOH B:493
BINDING SITE FOR RESIDUE SO4 B 440
13
DC8
SOFTWARE
ARG B:77 , ARG D:244
BINDING SITE FOR RESIDUE SO4 B 441
14
DC9
SOFTWARE
GLY B:318 , GLY B:319 , SO4 B:443 , FLC B:455
BINDING SITE FOR RESIDUE SO4 B 442
15
EC1
SOFTWARE
HIS B:323 , SO4 B:442
BINDING SITE FOR RESIDUE SO4 B 443
16
EC2
SOFTWARE
LYS A:280 , ARG B:359 , GLY B:362
BINDING SITE FOR RESIDUE SO4 B 444
17
EC3
SOFTWARE
ARG B:166
BINDING SITE FOR RESIDUE SO4 B 445
18
EC4
SOFTWARE
ARG B:2 , GLY B:426 , GLY B:428
BINDING SITE FOR RESIDUE SO4 B 446
19
EC5
SOFTWARE
ARG B:284 , VAL B:290
BINDING SITE FOR RESIDUE SO4 B 447
20
EC6
SOFTWARE
LYS B:99 , PRO B:252 , ARG B:256
BINDING SITE FOR RESIDUE SO4 B 448
21
EC7
SOFTWARE
LYS B:217 , ASN B:301 , ARG B:302 , ALA B:303 , PRO B:304
BINDING SITE FOR RESIDUE SO4 B 449
22
EC8
SOFTWARE
ARG B:24 , LEU B:129 , GLY B:130
BINDING SITE FOR RESIDUE SO4 B 450
23
EC9
SOFTWARE
ARG B:25 , PHE B:47 , ASP B:48
BINDING SITE FOR RESIDUE SO4 B 451
24
FC1
SOFTWARE
GLU B:292 , HIS B:293 , THR B:294 , ARG B:320 , FLC B:455
BINDING SITE FOR RESIDUE SO4 B 452
25
FC2
SOFTWARE
PRO B:172 , ASP B:173 , SER B:269 , GLU B:270
BINDING SITE FOR RESIDUE SO4 B 453
26
FC3
SOFTWARE
PRO B:243 , ARG B:244
BINDING SITE FOR RESIDUE SO4 B 454
27
FC4
SOFTWARE
GLY B:312 , GLY B:319 , ARG B:320 , SO4 B:442 , SO4 B:452
BINDING SITE FOR RESIDUE FLC B 455
28
FC5
SOFTWARE
LEU A:407 , LYS A:411 , LEU B:407 , LYS B:411 , ALA B:414
BINDING SITE FOR RESIDUE FLC B 456
29
FC6
SOFTWARE
ASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , ZN B:458
BINDING SITE FOR RESIDUE ZN B 457
30
FC7
SOFTWARE
HIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , ZN B:457
BINDING SITE FOR RESIDUE ZN B 458
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3idza_ (A:)
1b: SCOP_d3idzb_ (B:)
1c: SCOP_d3idzc_ (C:)
1d: SCOP_d3idzd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3idza_
A:
1b
d3idzb_
B:
1c
d3idzc_
C:
1d
d3idzd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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