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(-) Description

Title :  CRYSTAL STRUCTURE OF CATALYTIC ELIMINATION ANTIBODY 34E4, TRICLINIC CRYSTAL FORM
 
Authors :  E. W. Debler, I. A. Wilson
Date :  04 Mar 08  (Deposition) - 15 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  H,L  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  E,F  (1x)
Biol. Unit 5:  G,I  (1x)
Biol. Unit 6:  J,K  (1x)
Biol. Unit 7:  M,N  (1x)
Biol. Unit 8:  O,P  (1x)
Keywords :  Immunoglobulin, Catalytic Antibody, Chimeric Fab, Apo Form, Proton Transfer, Conformational Change, Immune System, Chimera, Immunoglobulin Domain, Immunoglobulin V Region (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. W. Debler, R. Muller, D. Hilvert, I. A. Wilson
Conformational Isomerism Can Limit Antibody Catalysis.
J. Biol. Chem. V. 283 16554 2008
PubMed-ID: 18417480  |  Reference-DOI: 10.1074/JBC.M710256200

(-) Compounds

Molecule 1 - CATALYTIC ANTIBODY FAB 34E4 LIGHT CHAIN
    ChainsL, A, C, E, G, J, M, O
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP4XH-M13
    Expression System StrainTOPP2
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneIGL-V1
    Organism CommonHOUSE MOUSE, HUMAN
    Organism ScientificMUS MUSCULUS, HOMO SAPIENS
    Organism Taxid10090,9606
    Other DetailsFUSION PROTEIN OF THE VARIABLE DOMAIN (AUTHOR RESIDUES 1-105) AND THE CONSTANT DOMAIN (UNP RESIDUES 131-239)
    Strain,
 
Molecule 2 - CATALYTIC ANTIBODY FAB 34E4 HEAVY CHAIN
    ChainsH, B, D, F, I, K, N, P
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP4XH-M13
    Expression System StrainTOPP2
    Expression System Taxid562
    Expression System Vector TypePLASMID
    MutationYES
    Organism CommonHOUSE MOUSE, HUMAN
    Organism ScientificMUS MUSCULUS, HOMO SAPIENS
    Organism Taxid10090,9606
    Other DetailsFUSION PROTEIN OF THE VARIABLE DOMAIN (AUTHOR RESIDUES 1-103) AND THE CONSTANT DOMAIN (UNP RESIDUES 133-246)
    Strain,

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit ABCDEFGHIJKLMNOP
Biological Unit 1 (1x)       H   L    
Biological Unit 2 (1x)AB              
Biological Unit 3 (1x)  CD            
Biological Unit 4 (1x)    EF          
Biological Unit 5 (1x)      G I       
Biological Unit 6 (1x)         JK     
Biological Unit 7 (1x)            MN  
Biological Unit 8 (1x)              OP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 27)

Asymmetric Unit (3, 27)
No.NameCountTypeFull Name
1B3P2Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD23Ligand/IonCADMIUM ION
3GOL2Ligand/IonGLYCEROL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1B3P-1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD-1Ligand/IonCADMIUM ION
3GOL-1Ligand/IonGLYCEROL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1B3P-1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD-1Ligand/IonCADMIUM ION
3GOL1Ligand/IonGLYCEROL
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1B3P-1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD-1Ligand/IonCADMIUM ION
3GOL-1Ligand/IonGLYCEROL
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1B3P-1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD-1Ligand/IonCADMIUM ION
3GOL1Ligand/IonGLYCEROL
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1B3P-1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD-1Ligand/IonCADMIUM ION
3GOL-1Ligand/IonGLYCEROL
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1B3P-1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD-1Ligand/IonCADMIUM ION
3GOL-1Ligand/IonGLYCEROL
Biological Unit 7 (1, 1)
No.NameCountTypeFull Name
1B3P1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD-1Ligand/IonCADMIUM ION
3GOL-1Ligand/IonGLYCEROL
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1B3P1Ligand/Ion2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CD-1Ligand/IonCADMIUM ION
3GOL-1Ligand/IonGLYCEROL

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY J:57 , GLN L:79 , THR L:80 , GLU L:81 , HOH L:341 , HOH L:344BINDING SITE FOR RESIDUE CD L 301
02AC2SOFTWAREHOH J:324 , HOH J:332 , HOH L:330 , HOH L:335BINDING SITE FOR RESIDUE CD L 319
03AC3SOFTWAREHIS H:172 , ASN L:138 , HOH L:333BINDING SITE FOR RESIDUE CD L 323
04AC4SOFTWAREGLN A:79 , GLU A:81 , HOH A:411 , HOH A:416 , GLY M:57BINDING SITE FOR RESIDUE CD A 317
05AC5SOFTWAREASP A:69 , HOH A:403 , HOH J:330BINDING SITE FOR RESIDUE CD A 318
06AC6SOFTWAREGLU B:226 , GLU H:226BINDING SITE FOR RESIDUE CD B 306
07AC7SOFTWAREGLN C:79 , THR C:80 , GLU C:81 , HOH C:322 , GLY G:57BINDING SITE FOR RESIDUE CD C 308
08AC8SOFTWAREASN C:138 , HIS D:172BINDING SITE FOR RESIDUE CD C 309
09AC9SOFTWAREASN C:152 , HOH C:313 , HOH C:316 , HOH C:317 , HOH C:341 , ASN G:152BINDING SITE FOR RESIDUE CD C 310
10BC1SOFTWAREASP D:65 , ASP L:185BINDING SITE FOR RESIDUE CD D 311
11BC2SOFTWAREGLU D:226 , GLU P:226BINDING SITE FOR RESIDUE CD D 312
12BC3SOFTWAREGLN E:79 , GLU E:81 , HOH E:407 , GLY O:57BINDING SITE FOR RESIDUE CD E 314
13BC4SOFTWAREASN E:137 , ASN E:138 , HOH E:410 , HIS F:172BINDING SITE FOR RESIDUE CD E 322
14BC5SOFTWAREGLY C:57 , GLN G:79 , THR G:80 , GLU G:81 , HOH G:335 , HOH G:338BINDING SITE FOR RESIDUE CD G 307
15BC6SOFTWAREASN G:138 , HIS I:172BINDING SITE FOR RESIDUE CD G 315
16BC7SOFTWAREGLU C:81 , HOH C:319 , HOH C:329 , HOH G:327BINDING SITE FOR RESIDUE CD G 320
17BC8SOFTWARESER G:14 , GLU G:17 , HOH G:347BINDING SITE FOR RESIDUE CD G 321
18BC9SOFTWAREASN J:138 , HIS K:172BINDING SITE FOR RESIDUE CD J 302
19CC1SOFTWAREASN J:152 , HOH J:320 , HOH J:322 , HOH J:347 , HOH J:351 , ASN L:152BINDING SITE FOR RESIDUE CD J 303
20CC2SOFTWAREGLN J:79 , THR J:80 , GLU J:81 , HOH J:340 , GLY L:57BINDING SITE FOR RESIDUE CD J 316
21CC3SOFTWAREASP G:185 , HOH G:343 , ASP K:65BINDING SITE FOR RESIDUE CD K 304
22CC4SOFTWAREGLY A:57 , GLN M:79 , GLU M:81 , HOH M:506BINDING SITE FOR RESIDUE CD M 305
23CC5SOFTWAREGLY E:57 , GLN O:79 , GLU O:81 , HOH O:505BINDING SITE FOR RESIDUE CD O 313
24CC6SOFTWARESER E:203 , PRO E:204 , ASP L:69 , ARG L:70 , ASP M:69 , ARG M:70 , HOH M:515BINDING SITE FOR RESIDUE B3P M 501
25CC7SOFTWARESER A:203 , PRO A:204 , ASP G:69 , ARG G:70 , ASP O:69 , ARG O:70BINDING SITE FOR RESIDUE B3P O 502
26CC8SOFTWAREGLU A:81 , GLU M:81BINDING SITE FOR RESIDUE GOL A 402
27CC9SOFTWAREGLU E:81 , HOH E:406 , GLU O:81BINDING SITE FOR RESIDUE GOL E 403

(-) SS Bonds  (32, 32)

Asymmetric Unit
No.Residues
1A:23 -A:88
2A:134 -A:194
3B:22 -B:92
4B:142 -B:208
5C:23 -C:88
6C:134 -C:194
7D:22 -D:92
8D:142 -D:208
9E:23 -E:88
10E:134 -E:194
11F:22 -F:92
12F:142 -F:208
13G:23 -G:88
14G:134 -G:194
15H:22 -H:92
16H:142 -H:208
17I:22 -I:92
18I:142 -I:208
19J:23 -J:88
20J:134 -J:194
21K:22 -K:92
22K:142 -K:208
23L:23 -L:88
24L:134 -L:194
25M:23 -M:88
26M:134 -M:194
27N:22 -N:92
28N:142 -N:208
29O:23 -O:88
30O:134 -O:194
31P:22 -P:92
32P:142 -P:208

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Tyr L:140 -Pro L:141
2Phe H:148 -Pro H:149
3Glu H:150 -Pro H:151
4Tyr A:140 -Pro A:141
5Phe B:148 -Pro B:149
6Glu B:150 -Pro B:151
7Tyr C:140 -Pro C:141
8Phe D:148 -Pro D:149
9Glu D:150 -Pro D:151
10Tyr E:140 -Pro E:141
11Phe F:148 -Pro F:149
12Glu F:150 -Pro F:151
13Tyr G:140 -Pro G:141
14Phe I:148 -Pro I:149
15Glu I:150 -Pro I:151
16Tyr J:140 -Pro J:141
17Phe K:148 -Pro K:149
18Glu K:150 -Pro K:151
19Tyr M:140 -Pro M:141
20Phe N:148 -Pro N:149
21Glu N:150 -Pro N:151
22Tyr O:140 -Pro O:141
23Phe P:148 -Pro P:149
24Glu P:150 -Pro P:151

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 16)

Asymmetric Unit (2, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---A/C/E/G/J/L/M/OW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---A/C/E/G/J/L/M/OV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---LW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---LV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---AW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---AV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---CW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---CV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---EW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---EV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---GW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---GV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---JW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---JV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 7 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---MW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---MV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 8 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066403W41RIGKC_HUMANDisease (IGKCD)  ---OW148R
2UniProtVAR_003897V84LIGKC_HUMANPolymorphism  ---OV191L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  8A:192-198
C:192-198
E:192-198
G:192-198
J:192-198
L:192-198
M:192-198
O:192-198
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  1-
-
-
-
-
L:192-198
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  1A:192-198
-
-
-
-
-
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  1-
C:192-198
-
-
-
-
-
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  1-
-
E:192-198
-
-
-
-
-
Biological Unit 5 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  1-
-
-
G:192-198
-
-
-
-
Biological Unit 6 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  1-
-
-
-
J:192-198
-
-
-
Biological Unit 7 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  1-
-
-
-
-
-
M:192-198
-
Biological Unit 8 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_HUMAN85-91
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
O:192-198

(-) Exons   (0, 0)

(no "Exon" information available for 3CFK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:215
 aligned with IGKC_HUMAN | P01834 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:215
                                                                                                                                         1                                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         1        11        21        31        41        51        61        71        81        91       101     
          IGKC_HUMAN      - -------------------------------------------------------------------------------------------------------------RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  106
               SCOP domains d3cfka1 A:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                   d3cfka2 A:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             - SCOP domains
               CATH domains 3cfkA01 A:1-108 Immunoglobulins                                                                               3cfkA02 A:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeeee..eeee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------L---------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk A    1 ELVVTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208     
                                    9|              27A||                                                                                                                                                                                          
                                    11               27B|                                                                                                                                                                                          
                                                      27C                                                                                                                                                                                          

Chain B from PDB  Type:PROTEIN  Length:224
 aligned with A8K008_HUMAN | A8K008 from UniProtKB/TrEMBL  Length:472

    Alignment length:226
                                                                                                                                      126                                                                                                                     
                                                                                                                                   125  |                                                                                                                     
                                    29        39        49        59        69        79        89        99       109       119     | 127       137       147       157       167       177       187       197       207       217       227       237      
        A8K008_HUMAN     20 EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTNPPDYY--YYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  243
               SCOP domains d3cfkb1 B:1-113 Immunoglobulin heavy chain variable   domain, VH                                                             d3cfkb2 B:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkB01 B:1-113 Immunoglobulins                                                                                              3cfkB02 B:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.--.....eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee........eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk B    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEIN--PDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYNHYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50 |  |   57        67        77     |||84        94      100D||     108       118       128 ||    140       150   ||||165   ||  176   ||  187       197  |||  210       220  ||  
                                                                              52  |                            82A||               100A|||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                52A                             82B|                100B||||                            133                   156||     171       182                203|                226  
                                                                                                                 82C                 100C|||                                                   157|                                   205                     
                                                                                                                                      100D||                                                    162                                                           
                                                                                                                                       100E|                                                                                                                  
                                                                                                                                        100F                                                                                                                  

Chain B from PDB  Type:PROTEIN  Length:224
 aligned with Q6N089_HUMAN | Q6N089 from UniProtKB/TrEMBL  Length:472

    Alignment length:225
                                                                                                                             118                                                                                                                             
                                                                                                                           117 |                                                                                                                             
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228       238     
        Q6N089_HUMAN     20 EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIAYADSVKGRFTISRDNGKNSLYLQMNSLRAEDTALYYCAK-EIGAHNFYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  243
               SCOP domains d3cfkb1 B:1-113 Immunoglobulin heavy chain variable domain, VH                                                              d3cfkb2 B:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkB01 B:1-113 Immunoglobulins                                                                                             3cfkB02 B:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee.....-...eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk B    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEINPDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYN-HYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    | 100E|      109       119       129||     141       151  |||| 166  ||   177  ||   188       198 |||   211       221 ||  
                                                                              52A                            82A||               100A |||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                                              82B|                 100B||||                            133                   156||     171       182                203|                226  
                                                                                                               82C                  100C|||                                                   157|                                   205                     
                                                                                                                                     100D||                                                    162                                                           
                                                                                                                                      100E|                                                                                                                  
                                                                                                                                       100F                                                                                                                  

Chain C from PDB  Type:PROTEIN  Length:215
 aligned with IGKC_HUMAN | P01834 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:215
                                                                                                                                         1                                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         1        11        21        31        41        51        61        71        81        91       101     
          IGKC_HUMAN      - -------------------------------------------------------------------------------------------------------------RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  106
               SCOP domains d3cfkc1 C:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                   d3cfkc2 C:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             - SCOP domains
               CATH domains 3cfkC01 C:1-108 Immunoglobulins                                                                               3cfkC02 C:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeee....eee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------L---------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk C    1 ELVVTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208     
                                    9|              27A||                                                                                                                                                                                          
                                    11               27B|                                                                                                                                                                                          
                                                      27C                                                                                                                                                                                          

Chain D from PDB  Type:PROTEIN  Length:224
 aligned with A8K008_HUMAN | A8K008 from UniProtKB/TrEMBL  Length:472

    Alignment length:226
                                                                                                                                      126                                                                                                                     
                                                                                                                                   125  |                                                                                                                     
                                    29        39        49        59        69        79        89        99       109       119     | 127       137       147       157       167       177       187       197       207       217       227       237      
        A8K008_HUMAN     20 EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTNPPDYY--YYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  243
               SCOP domains d3cfkd1 D:1-113 Immunoglobulin heavy chain variable   domain, VH                                                             d3cfkd2 D:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkD01 D:1-113 Immunoglobulins                                                                                              3cfkD02 D:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.--.....eee.hhhhh.eeeeeehhh.eeeeee...hhhhheeeeeeeeeee....eeeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk D    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEIN--PDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYNHYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50 |  |   57        67        77     |||84        94      100D||     108       118       128 ||    140       150   ||||165   ||  176   ||  187       197  |||  210       220  ||  
                                                                              52  |                            82A||               100A|||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                52A                             82B|                100B||||                            133                   156||     171       182                203|                226  
                                                                                                                 82C                 100C|||                                                   157|                                   205                     
                                                                                                                                      100D||                                                    162                                                           
                                                                                                                                       100E|                                                                                                                  
                                                                                                                                        100F                                                                                                                  

Chain D from PDB  Type:PROTEIN  Length:224
 aligned with Q6N089_HUMAN | Q6N089 from UniProtKB/TrEMBL  Length:472

    Alignment length:225
                                                                                                                             118                                                                                                                             
                                                                                                                           117 |                                                                                                                             
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228       238     
        Q6N089_HUMAN     20 EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIAYADSVKGRFTISRDNGKNSLYLQMNSLRAEDTALYYCAK-EIGAHNFYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  243
               SCOP domains d3cfkd1 D:1-113 Immunoglobulin heavy chain variable domain, VH                                                              d3cfkd2 D:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkD01 D:1-113 Immunoglobulins                                                                                             3cfkD02 D:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhhh.eeeeeehhh.eeeeee...hhhhheeeeeeeeeee...-.eeeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk D    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEINPDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYN-HYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    | 100E|      109       119       129||     141       151  |||| 166  ||   177  ||   188       198 |||   211       221 ||  
                                                                              52A                            82A||               100A |||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                                              82B|                 100B||||                            133                   156||     171       182                203|                226  
                                                                                                               82C                  100C|||                                                   157|                                   205                     
                                                                                                                                     100D||                                                    162                                                           
                                                                                                                                      100E|                                                                                                                  
                                                                                                                                       100F                                                                                                                  

Chain E from PDB  Type:PROTEIN  Length:215
 aligned with IGKC_HUMAN | P01834 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:215
                                                                                                                                         1                                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         1        11        21        31        41        51        61        71        81        91       101     
          IGKC_HUMAN      - -------------------------------------------------------------------------------------------------------------RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  106
               SCOP domains d3cfke1 E:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                   d3cfke2 E:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             - SCOP domains
               CATH domains 3cfkE01 E:1-108 Immunoglobulins                                                                               3cfkE02 E:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeeee..eeee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------L---------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk E    1 ELVVTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208     
                                    9|              27A||                                                                                                                                                                                          
                                    11               27B|                                                                                                                                                                                          
                                                      27C                                                                                                                                                                                          

Chain F from PDB  Type:PROTEIN  Length:224
 aligned with A8K008_HUMAN | A8K008 from UniProtKB/TrEMBL  Length:472

    Alignment length:226
                                                                                                                                      126                                                                                                                     
                                                                                                                                   125  |                                                                                                                     
                                    29        39        49        59        69        79        89        99       109       119     | 127       137       147       157       167       177       187       197       207       217       227       237      
        A8K008_HUMAN     20 EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTNPPDYY--YYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  243
               SCOP domains d3cfkf1 F:1-113 Immunoglobulin heavy chain variable   domain, VH                                                             d3cfkf2 F:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkF01 F:1-113 Immunoglobulins                                                                                              3cfkF02 F:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.--.....eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee........eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee........eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk F    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEIN--PDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYNHYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50 |  |   57        67        77     |||84        94      100D||     108       118       128 ||    140       150   ||||165   ||  176   ||  187       197  |||  210       220  ||  
                                                                              52  |                            82A||               100A|||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                52A                             82B|                100B||||                            133                   156||     171       182                203|                226  
                                                                                                                 82C                 100C|||                                                   157|                                   205                     
                                                                                                                                      100D||                                                    162                                                           
                                                                                                                                       100E|                                                                                                                  
                                                                                                                                        100F                                                                                                                  

Chain F from PDB  Type:PROTEIN  Length:224
 aligned with Q6N089_HUMAN | Q6N089 from UniProtKB/TrEMBL  Length:472

    Alignment length:225
                                                                                                                             118                                                                                                                             
                                                                                                                           117 |                                                                                                                             
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228       238     
        Q6N089_HUMAN     20 EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIAYADSVKGRFTISRDNGKNSLYLQMNSLRAEDTALYYCAK-EIGAHNFYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  243
               SCOP domains d3cfkf1 F:1-113 Immunoglobulin heavy chain variable domain, VH                                                              d3cfkf2 F:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkF01 F:1-113 Immunoglobulins                                                                                             3cfkF02 F:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee.....-...eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee........eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk F    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEINPDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYN-HYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    | 100E|      109       119       129||     141       151  |||| 166  ||   177  ||   188       198 |||   211       221 ||  
                                                                              52A                            82A||               100A |||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                                              82B|                 100B||||                            133                   156||     171       182                203|                226  
                                                                                                               82C                  100C|||                                                   157|                                   205                     
                                                                                                                                     100D||                                                    162                                                           
                                                                                                                                      100E|                                                                                                                  
                                                                                                                                       100F                                                                                                                  

Chain G from PDB  Type:PROTEIN  Length:215
 aligned with IGKC_HUMAN | P01834 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:215
                                                                                                                                         1                                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         1        11        21        31        41        51        61        71        81        91       101     
          IGKC_HUMAN      - -------------------------------------------------------------------------------------------------------------RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  106
               SCOP domains d3cfkg1 G:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                   d3cfkg2 G:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             - SCOP domains
               CATH domains 3cfkG01 G:1-108 Immunoglobulins                                                                               3cfkG02 G:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeeee..eeee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------L---------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk G    1 ELVVTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208     
                                    9|              27A||                                                                                                                                                                                          
                                    11               27B|                                                                                                                                                                                          
                                                      27C                                                                                                                                                                                          

Chain H from PDB  Type:PROTEIN  Length:224
 aligned with A8K008_HUMAN | A8K008 from UniProtKB/TrEMBL  Length:472

    Alignment length:226
                                                                                                                                      126                                                                                                                     
                                                                                                                                   125  |                                                                                                                     
                                    29        39        49        59        69        79        89        99       109       119     | 127       137       147       157       167       177       187       197       207       217       227       237      
        A8K008_HUMAN     20 EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTNPPDYY--YYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  243
               SCOP domains d3cfkh1 H:1-113 Immunoglobulin heavy chain variable   domain, VH                                                             d3cfkh2 H:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkH01 H:1-113 Immunoglobulins                                                                                              3cfkH02 H:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.--.....eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeeeeee....eeeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk H    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEIN--PDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYNHYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50 |  |   57        67        77     |||84        94      100D||     108       118       128 ||    140       150   ||||165   ||  176   ||  187       197  |||  210       220  ||  
                                                                              52  |                            82A||               100A|||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                52A                             82B|                100B||||                            133                   156||     171       182                203|                226  
                                                                                                                 82C                 100C|||                                                   157|                                   205                     
                                                                                                                                      100D||                                                    162                                                           
                                                                                                                                       100E|                                                                                                                  
                                                                                                                                        100F                                                                                                                  

Chain H from PDB  Type:PROTEIN  Length:224
 aligned with Q6N089_HUMAN | Q6N089 from UniProtKB/TrEMBL  Length:472

    Alignment length:225
                                                                                                                             118                                                                                                                             
                                                                                                                           117 |                                                                                                                             
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228       238     
        Q6N089_HUMAN     20 EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIAYADSVKGRFTISRDNGKNSLYLQMNSLRAEDTALYYCAK-EIGAHNFYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  243
               SCOP domains d3cfkh1 H:1-113 Immunoglobulin heavy chain variable domain, VH                                                              d3cfkh2 H:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkH01 H:1-113 Immunoglobulins                                                                                             3cfkH02 H:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeeeeee...-.eeeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk H    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEINPDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYN-HYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    | 100E|      109       119       129||     141       151  |||| 166  ||   177  ||   188       198 |||   211       221 ||  
                                                                              52A                            82A||               100A |||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                                              82B|                 100B||||                            133                   156||     171       182                203|                226  
                                                                                                               82C                  100C|||                                                   157|                                   205                     
                                                                                                                                     100D||                                                    162                                                           
                                                                                                                                      100E|                                                                                                                  
                                                                                                                                       100F                                                                                                                  

Chain I from PDB  Type:PROTEIN  Length:224
 aligned with A8K008_HUMAN | A8K008 from UniProtKB/TrEMBL  Length:472

    Alignment length:226
                                                                                                                                      126                                                                                                                     
                                                                                                                                   125  |                                                                                                                     
                                    29        39        49        59        69        79        89        99       109       119     | 127       137       147       157       167       177       187       197       207       217       227       237      
        A8K008_HUMAN     20 EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTNPPDYY--YYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  243
               SCOP domains d3cfki1 I:1-113 Immunoglobulin heavy chain variable   domain, VH                                                             d3cfki2 I:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkI01 I:1-113 Immunoglobulins                                                                                              3cfkI02 I:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.--.....eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee........eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee........eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk I    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEIN--PDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYNHYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50 |  |   57        67        77     |||84        94      100D||     108       118       128 ||    140       150   ||||165   ||  176   ||  187       197  |||  210       220  ||  
                                                                              52  |                            82A||               100A|||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                52A                             82B|                100B||||                            133                   156||     171       182                203|                226  
                                                                                                                 82C                 100C|||                                                   157|                                   205                     
                                                                                                                                      100D||                                                    162                                                           
                                                                                                                                       100E|                                                                                                                  
                                                                                                                                        100F                                                                                                                  

Chain I from PDB  Type:PROTEIN  Length:224
 aligned with Q6N089_HUMAN | Q6N089 from UniProtKB/TrEMBL  Length:472

    Alignment length:225
                                                                                                                             118                                                                                                                             
                                                                                                                           117 |                                                                                                                             
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228       238     
        Q6N089_HUMAN     20 EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIAYADSVKGRFTISRDNGKNSLYLQMNSLRAEDTALYYCAK-EIGAHNFYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  243
               SCOP domains d3cfki1 I:1-113 Immunoglobulin heavy chain variable domain, VH                                                              d3cfki2 I:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkI01 I:1-113 Immunoglobulins                                                                                             3cfkI02 I:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee.....-...eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee........eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk I    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEINPDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYN-HYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    | 100E|      109       119       129||     141       151  |||| 166  ||   177  ||   188       198 |||   211       221 ||  
                                                                              52A                            82A||               100A |||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                                              82B|                 100B||||                            133                   156||     171       182                203|                226  
                                                                                                               82C                  100C|||                                                   157|                                   205                     
                                                                                                                                     100D||                                                    162                                                           
                                                                                                                                      100E|                                                                                                                  
                                                                                                                                       100F                                                                                                                  

Chain J from PDB  Type:PROTEIN  Length:215
 aligned with IGKC_HUMAN | P01834 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:215
                                                                                                                                         1                                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         1        11        21        31        41        51        61        71        81        91       101     
          IGKC_HUMAN      - -------------------------------------------------------------------------------------------------------------RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  106
               SCOP domains d3cfkj1 J:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                   d3cfkj2 J:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             - SCOP domains
               CATH domains 3cfkJ01 J:1-108 Immunoglobulins                                                                               3cfkJ02 J:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeeee..eeee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------L---------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk J    1 ELVVTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208     
                                    9|              27A||                                                                                                                                                                                          
                                    11               27B|                                                                                                                                                                                          
                                                      27C                                                                                                                                                                                          

Chain K from PDB  Type:PROTEIN  Length:224
 aligned with A8K008_HUMAN | A8K008 from UniProtKB/TrEMBL  Length:472

    Alignment length:226
                                                                                                                                      126                                                                                                                     
                                                                                                                                   125  |                                                                                                                     
                                    29        39        49        59        69        79        89        99       109       119     | 127       137       147       157       167       177       187       197       207       217       227       237      
        A8K008_HUMAN     20 EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTNPPDYY--YYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  243
               SCOP domains d3cfkk1 K:1-113 Immunoglobulin heavy chain variable   domain, VH                                                             d3cfkk2 K:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkK01 K:1-113 Immunoglobulins                                                                                              3cfkK02 K:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.--.....eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeeeeeehhhheeeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee........eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk K    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEIN--PDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYNHYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50 |  |   57        67        77     |||84        94      100D||     108       118       128 ||    140       150   ||||165   ||  176   ||  187       197  |||  210       220  ||  
                                                                              52  |                            82A||               100A|||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                52A                             82B|                100B||||                            133                   156||     171       182                203|                226  
                                                                                                                 82C                 100C|||                                                   157|                                   205                     
                                                                                                                                      100D||                                                    162                                                           
                                                                                                                                       100E|                                                                                                                  
                                                                                                                                        100F                                                                                                                  

Chain K from PDB  Type:PROTEIN  Length:224
 aligned with Q6N089_HUMAN | Q6N089 from UniProtKB/TrEMBL  Length:472

    Alignment length:225
                                                                                                                             118                                                                                                                             
                                                                                                                           117 |                                                                                                                             
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228       238     
        Q6N089_HUMAN     20 EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIAYADSVKGRFTISRDNGKNSLYLQMNSLRAEDTALYYCAK-EIGAHNFYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  243
               SCOP domains d3cfkk1 K:1-113 Immunoglobulin heavy chain variable domain, VH                                                              d3cfkk2 K:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkK01 K:1-113 Immunoglobulins                                                                                             3cfkK02 K:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeeeeeehhh-heeeeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee........eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk K    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEINPDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYN-HYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    | 100E|      109       119       129||     141       151  |||| 166  ||   177  ||   188       198 |||   211       221 ||  
                                                                              52A                            82A||               100A |||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                                              82B|                 100B||||                            133                   156||     171       182                203|                226  
                                                                                                               82C                  100C|||                                                   157|                                   205                     
                                                                                                                                     100D||                                                    162                                                           
                                                                                                                                      100E|                                                                                                                  
                                                                                                                                       100F                                                                                                                  

Chain L from PDB  Type:PROTEIN  Length:215
 aligned with IGKC_HUMAN | P01834 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:215
                                                                                                                                         1                                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         1        11        21        31        41        51        61        71        81        91       101     
          IGKC_HUMAN      - -------------------------------------------------------------------------------------------------------------RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  106
               SCOP domains d3cfkl1 L:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                   d3cfkl2 L:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             - SCOP domains
               CATH domains 3cfkL01 L:1-108 Immunoglobulins                                                                               3cfkL02 L:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeeee..eeee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------L---------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk L    1 ELVVTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208     
                                    9|              27A||                                                                                                                                                                                          
                                    11               27B|                                                                                                                                                                                          
                                                      27C                                                                                                                                                                                          

Chain M from PDB  Type:PROTEIN  Length:215
 aligned with IGKC_HUMAN | P01834 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:215
                                                                                                                                         1                                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         1        11        21        31        41        51        61        71        81        91       101     
          IGKC_HUMAN      - -------------------------------------------------------------------------------------------------------------RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  106
               SCOP domains d3cfkm1 M:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                   d3cfkm2 M:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             - SCOP domains
               CATH domains 3cfkM01 M:1-108 Immunoglobulins                                                                               3cfkM02 M:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeeee..eeee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee....eeeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeeee......eeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------L---------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk M    1 ELVVTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208     
                                    9|              27A||                                                                                                                                                                                          
                                    11               27B|                                                                                                                                                                                          
                                                      27C                                                                                                                                                                                          

Chain N from PDB  Type:PROTEIN  Length:224
 aligned with A8K008_HUMAN | A8K008 from UniProtKB/TrEMBL  Length:472

    Alignment length:226
                                                                                                                                      126                                                                                                                     
                                                                                                                                   125  |                                                                                                                     
                                    29        39        49        59        69        79        89        99       109       119     | 127       137       147       157       167       177       187       197       207       217       227       237      
        A8K008_HUMAN     20 EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTNPPDYY--YYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  243
               SCOP domains d3cfkn1 N:1-113 Immunoglobulin heavy chain variable   domain, VH                                                             d3cfkn2 N:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkN01 N:1-113 Immunoglobulins                                                                                              3cfkN02 N:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.--.....eee........eeeeehhh.eeeeee...hhhhheeeeeeeee........eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk N    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEIN--PDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYNHYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50 |  |   57        67        77     |||84        94      100D||     108       118       128 ||    140       150   ||||165   ||  176   ||  187       197  |||  210       220  ||  
                                                                              52  |                            82A||               100A|||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                52A                             82B|                100B||||                            133                   156||     171       182                203|                226  
                                                                                                                 82C                 100C|||                                                   157|                                   205                     
                                                                                                                                      100D||                                                    162                                                           
                                                                                                                                       100E|                                                                                                                  
                                                                                                                                        100F                                                                                                                  

Chain N from PDB  Type:PROTEIN  Length:224
 aligned with Q6N089_HUMAN | Q6N089 from UniProtKB/TrEMBL  Length:472

    Alignment length:225
                                                                                                                             118                                                                                                                             
                                                                                                                           117 |                                                                                                                             
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228       238     
        Q6N089_HUMAN     20 EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIAYADSVKGRFTISRDNGKNSLYLQMNSLRAEDTALYYCAK-EIGAHNFYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  243
               SCOP domains d3cfkn1 N:1-113 Immunoglobulin heavy chain variable domain, VH                                                              d3cfkn2 N:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkN01 N:1-113 Immunoglobulins                                                                                             3cfkN02 N:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee........eeeeehhh.eeeeee...hhhhheeeeeeeee.....-...eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk N    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEINPDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYN-HYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    | 100E|      109       119       129||     141       151  |||| 166  ||   177  ||   188       198 |||   211       221 ||  
                                                                              52A                            82A||               100A |||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                                              82B|                 100B||||                            133                   156||     171       182                203|                226  
                                                                                                               82C                  100C|||                                                   157|                                   205                     
                                                                                                                                     100D||                                                    162                                                           
                                                                                                                                      100E|                                                                                                                  
                                                                                                                                       100F                                                                                                                  

Chain O from PDB  Type:PROTEIN  Length:215
 aligned with IGKC_HUMAN | P01834 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:215
                                                                                                                                         1                                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         1        11        21        31        41        51        61        71        81        91       101     
          IGKC_HUMAN      - -------------------------------------------------------------------------------------------------------------RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  106
               SCOP domains d3cfko1 O:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                   d3cfko2 O:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa                             - SCOP domains
               CATH domains 3cfkO01 O:1-108 Immunoglobulins                                                                               3cfkO02 O:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeeeee.....hhhhh.eeeeee...eeeeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeeeee..eeee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------L---------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk O    1 ELVVTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGLIGGTNKRAPGVPARFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    11        21      ||28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208     
                                    9|              27A||                                                                                                                                                                                          
                                    11               27B|                                                                                                                                                                                          
                                                      27C                                                                                                                                                                                          

Chain P from PDB  Type:PROTEIN  Length:224
 aligned with A8K008_HUMAN | A8K008 from UniProtKB/TrEMBL  Length:472

    Alignment length:226
                                                                                                                                      126                                                                                                                     
                                                                                                                                   125  |                                                                                                                     
                                    29        39        49        59        69        79        89        99       109       119     | 127       137       147       157       167       177       187       197       207       217       227       237      
        A8K008_HUMAN     20 EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTNPPDYY--YYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  243
               SCOP domains d3cfkp1 P:1-113 Immunoglobulin heavy chain variable   domain, VH                                                             d3cfkp2 P:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkP01 P:1-113 Immunoglobulins                                                                                              3cfkP02 P:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.--.....eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee........eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk P    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEIN--PDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYNHYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50 |  |   57        67        77     |||84        94      100D||     108       118       128 ||    140       150   ||||165   ||  176   ||  187       197  |||  210       220  ||  
                                                                              52  |                            82A||               100A|||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                52A                             82B|                100B||||                            133                   156||     171       182                203|                226  
                                                                                                                 82C                 100C|||                                                   157|                                   205                     
                                                                                                                                      100D||                                                    162                                                           
                                                                                                                                       100E|                                                                                                                  
                                                                                                                                        100F                                                                                                                  

Chain P from PDB  Type:PROTEIN  Length:224
 aligned with Q6N089_HUMAN | Q6N089 from UniProtKB/TrEMBL  Length:472

    Alignment length:225
                                                                                                                             118                                                                                                                             
                                                                                                                           117 |                                                                                                                             
                                    29        39        49        59        69        79        89        99       109       118       128       138       148       158       168       178       188       198       208       218       228       238     
        Q6N089_HUMAN     20 EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIAYADSVKGRFTISRDNGKNSLYLQMNSLRAEDTALYYCAK-EIGAHNFYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  243
               SCOP domains d3cfkp1 P:1-113 Immunoglobulin heavy chain variable domain, VH                                                              d3cfkp2 P:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 3cfkP01 P:1-113 Immunoglobulins                                                                                             3cfkP02 P:114-228 Immunoglobulins                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee.....-...eeeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3cfk P    1 EVKLLESGGGLAQPGGSLKLSCAASGFDFRRYWMTWVRQAPGKGLEWIGEINPDSRTINYMPSLKDKFIISRDNAKNSLYLQLSRLRSEDSALYYCVRLDFDVYN-HYYVLDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  228
                                    10        20        30        40        50  |     59        69        79   |||  86        96    | 100E|      109       119       129||     141       151  |||| 166  ||   177  ||   188       198 |||   211       221 ||  
                                                                              52A                            82A||               100A |||||                           130|                  154|||    169|      180|               200||               223|  
                                                                                                              82B|                 100B||||                            133                   156||     171       182                203|                226  
                                                                                                               82C                  100C|||                                                   157|                                   205                     
                                                                                                                                     100D||                                                    162                                                           
                                                                                                                                      100E|                                                                                                                  
                                                                                                                                       100F                                                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 32)

Asymmetric Unit

(-) CATH Domains  (1, 32)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
1a3cfkA02A:109-213
1b3cfkH02H:114-228
1c3cfkI02I:114-228
1d3cfkK02K:114-228
1e3cfkN02N:114-228
1f3cfkP02P:114-228
1g3cfkA01A:1-108
1h3cfkC01C:1-108
1i3cfkE01E:1-108
1j3cfkG01G:1-108
1k3cfkJ01J:1-108
1l3cfkL01L:1-108
1m3cfkM01M:1-108
1n3cfkO01O:1-108
1o3cfkB01B:1-113
1p3cfkC02C:109-213
1q3cfkD01D:1-113
1r3cfkF01F:1-113
1s3cfkH01H:1-113
1t3cfkI01I:1-113
1u3cfkK01K:1-113
1v3cfkN01N:1-113
1w3cfkP01P:1-113
1x3cfkE02E:109-213
1y3cfkG02G:109-213
1z3cfkJ02J:109-213
1aa3cfkL02L:109-213
1ab3cfkM02M:109-213
1ac3cfkO02O:109-213
1ad3cfkB02B:114-228
1ae3cfkD02D:114-228
1af3cfkF02F:114-228

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CFK)

(-) Gene Ontology  (26, 45)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G,J,L,M,O   (IGKC_HUMAN | P01834)
molecular function
    GO:0003823    antigen binding    Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.
    GO:0034987    immunoglobulin receptor binding    Interacting selectively and non-covalently with one or more specific sites on an immunoglobulin receptor molecule.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0050853    B cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell.
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0038096    Fc-gamma receptor signaling pathway involved in phagocytosis    An Fc-gamma receptor signaling pathway that contributes to the endocytic engulfment of external particulate material by phagocytes.
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0006911    phagocytosis, engulfment    The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis.
    GO:0006910    phagocytosis, recognition    The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell.
    GO:0050871    positive regulation of B cell activation    Any process that activates or increases the frequency, rate or extent of B cell activation.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0006898    receptor-mediated endocytosis    An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0001895    retina homeostasis    A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0042571    immunoglobulin complex, circulating    An immunoglobulin complex that is secreted into extracellular space and found in mucosal areas or other tissues or circulating in the blood or lymph. In its canonical form, a circulating immunoglobulin complex is composed of two identical heavy chains and two identical light chains, held together by disulfide bonds. Some forms of are polymers of the basic structure and contain additional components such as J-chain and the secretory component.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,D,F,H,I,K,N,P   (A8K008_HUMAN | A8K008)

Chain B,D,F,H,I,K,N,P   (Q6N089_HUMAN | Q6N089)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A8K008_HUMAN | A8K0083cfj 4o5l
        IGHG1_HUMAN | P018571aj7 1aqk 1axs 1bey 1d5b 1d5i 1d6v 1dfb 1dn2 1e4k 1fc1 1fc2 1fcc 1gaf 1h3t 1h3u 1h3v 1h3w 1h3x 1h3y 1hkl 1hzh 1i7z 1l6x 1n7m 1op3 1oqo 1oqx 1pg7 1t83 1t89 1vge 2dts 2gj7 2i5y 2iwg 2j6e 2jb5 2jb6 2o5x 2o5y 2o5z 2osl 2qad 2ql1 2qqk 2qql 2qqn 2qr0 2r56 2rcj 2rcs 2vxq 2wah 3agv 3ave 3ay4 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3c2s 3cfj 3csy 3d0l 3d0v 3d6g 3d85 3dj9 3dnk 3do3 3dro 3drq 3dvg 3dvn 3eyf 3eyo 3eyq 3fjt 3mcl 3o11 3ry6 3s7g 3sgj 3sgk 3tv3 3twc 3tyg 3u0w 3u7w 3u7y 3v7m 3v8c 3v95 3wjj 3wjl 3wkn 3wn5 4acp 4b7i 4bm7 4bsv 4bsw 4byh 4cdh 4d9q 4d9r 4dag 4dz8 4eow 4hix 4j12 4ku1 4lld 4llm 4llq 4n0u 4nqs 4nqt 4nqu 4nwt 4nwu 4o4y 4o51 4q6y 4q74 4q7d 4w4n 4w4o 4wi2 4wi3 4wi4 4wi5 4wi6 4wi7 4wi8 4wi9 4x4m 4x98 4x99 4xmp 4xny 4xnz 4xxd 4zne 5bw7 5c7k 5d4q 5d6d 5di8 5dj0 5dj2 5dj6 5dj8 5dja 5djc 5djd 5djx 5djy 5djz 5dk0 5dk2 5dvk 5dvl 5dvm 5dvn 5dvo 5gsq 5hsf 5hy9 5hye 5hyf 5hyi 5iq7 5iq9 5iw3 5iw6 5jih 5jii 5jik 5k33 5k8d 5kwg 5m3v 5v43 5v4e
        IGKC_HUMAN | P018341a4j 1a4k 1cly 1d5b 1d5i 1d6v 1dfb 1gaf 1hez 1hkl 1hzh 1i7z 1mim 1n0x 1om3 1op3 1op5 1ucb 2ny7 2o5x 2o5y 2o5z 2qqk 2qql 2qqn 2qsc 2r56 2rfx 2vxq 3b2u 3b2v 3bdy 3be1 3bky 3bn9 3bqu 3c08 3c09 3cfj 3csy 3d0l 3d85 3dvg 3dvn 3eyf 3eyo 3eyq 3iu3 3o11 3qct 3qcu 3qcv 3ru8 3u0w 3u7w 3u7y 3vh8 3wuw 3x11 3x12 4d3c 4d9r 4hix 4nm4 4nm8 4xmp 4xny 4xnz 4xxd 4ydv 5b38 5b39 5c7k 5esv 5esz 5ewi 5veb 5viy
        Q6N089_HUMAN | Q6N0892oqj 3mnv 3qct 3qcu 3qcv 4nm4 4nm8 4nuj 5ewi 5ug0
        Q8TCD0_HUMAN | Q8TCD01hzh 1n0x 3mnv 3mnw 3mnz 3pgf 4d9q 4nug 4nuj 4nwt 5viy 5vj6 5vod
UniProtKB/TrEMBL
        Q6N089_HUMAN | Q6N0891u6a 3cfj 4hpy
        Q8TCD0_HUMAN | Q8TCD03cfj 4nwu

(-) Related Entries Specified in the PDB File

1y0l THE CRYSTAL STRUCTURE OF CATALYTIC ANTIBODY 34E4 IN COMPLEX WITH HAPTEN, DETERMINED AT 2.50 ANGSTROM RESOLUTION
1y18 THE CRYSTAL STRUCTURE OF CATALYTIC ANTIBODY 34E4 E(H50)D MUTANT IN COMPLEX WITH HAPTEN, DETERMINED AT 2.80 ANGSTROM RESOLUTION
3cfj CRYSTAL STRUCTURE OF CATALYTIC ELIMINATION ANTIBODY 34E4, ORTHORHOMBIC CRYSTAL FORM