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(-) Description

Title :  CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFAPENTIN
 
Authors :  I. Artsimovitch, M. N. Vassylyeva, D. Svetlov, V. Svetlov, A. Perederina, N. Igarashi, N. Matsugaki, S. Wakatsuki, T. H. Tahirov D. G. Vassylyev, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  02 Jul 05  (Deposition) - 20 Sep 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  K,L,M,N,O,P  (1x)
Keywords :  Rna Polymerase Holoenzyme, Rifapentin, Antibiotic, Transcription Regulation, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. Artsimovitch, M. N. Vassylyeva, D. Svetlov, V. Svetlov, A. Perederina, N. Igarashi, N. Matsugaki, S. Wakatsuki, T. H. Tahirov, D. G. Vassylyev
Allosteric Modulation Of The Rna Polymerase Catalytic Reaction Is An Essential Component Of Transcription Control By Rifamycins.
Cell(Cambridge, Mass. ) V. 122 351 2005
PubMed-ID: 16096056  |  Reference-DOI: 10.1016/J.CELL.2005.07.014
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN
    ChainsA, B, K, L
    EC Number2.7.7.6
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274
    SynonymRNAP ALPHA SUBUNIT, TRANSCRIPTASE ALPHA CHAIN, RNA POLYMERASE ALPHA SUBUNIT
 
Molecule 2 - DNA-DIRECTED RNA POLYMERASE BETA CHAIN
    ChainsC, M
    EC Number2.7.7.6
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274
    SynonymRNAP BETA SUBUNIT, TRANSCRIPTASE BETA CHAIN, RNA POLYMERASE BETA SUBUNIT
 
Molecule 3 - DNA-DIRECTED RNA POLYMERASE BETA' CHAIN
    ChainsD, N
    EC Number2.7.7.6
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274
    SynonymRNAP BETA' SUBUNIT, TRANSCRIPTASE BETA' CHAIN, RNA POLYMERASE BETA' SUBUNIT
 
Molecule 4 - RNA POLYMERASE OMEGA CHAIN
    ChainsE, O
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274
 
Molecule 5 - RNA POLYMERASE SIGMA FACTOR RPOD
    ChainsF, P
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFKLMNOP
Biological Unit 1 (1x)ABCDEF      
Biological Unit 2 (1x)      KLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 493)

Asymmetric Unit (3, 493)
No.NameCountTypeFull Name
1MG487Ligand/IonMAGNESIUM ION
2RPT2Ligand/IonRIFAPENTINE
3ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2RPT1Ligand/IonRIFAPENTINE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2RPT1Ligand/IonRIFAPENTINE
3ZN-1Ligand/IonZINC ION

(-) Sites  (398, 398)

Asymmetric Unit (398, 398)
No.NameEvidenceResiduesDescription
001AC1SOFTWARETHR A:51 , LYS A:83 , VAL A:170 , HOH A:9478 , HOH A:9527 , HOH A:9608BINDING SITE FOR RESIDUE MG A 9002
002AC2SOFTWARESER A:204 , HOH A:9481BINDING SITE FOR RESIDUE MG A 9010
003AC3SOFTWAREGLU A:154 , LYS A:155 , HIS A:156 , GLY A:157 , HOH A:9624 , HOH A:9705 , HOH C:9885BINDING SITE FOR RESIDUE MG A 9012
004AC4SOFTWARELEU A:28 , GLU A:29 , ASP A:191 , LEU A:192BINDING SITE FOR RESIDUE MG A 9013
005AC5SOFTWAREMG A:9345BINDING SITE FOR RESIDUE MG A 9016
006AC6SOFTWAREALA A:111 , ARG A:112 , PHE A:114 , HOH A:9560BINDING SITE FOR RESIDUE MG A 9027
007AC7SOFTWAREGLU A:59BINDING SITE FOR RESIDUE MG A 9043
008AC8SOFTWAREVAL A:170 , HOH C:9914BINDING SITE FOR RESIDUE MG A 9068
009AC9SOFTWAREILE A:162 , HOH A:9488 , HOH A:9625BINDING SITE FOR RESIDUE MG A 9075
010AD1SOFTWAREPRO L:69 , GLY L:135BINDING SITE FOR RESIDUE MG L 9252
011AD2SOFTWAREASP L:60 , HOH L:4635BINDING SITE FOR RESIDUE MG L 9278
012AD3SOFTWAREVAL L:13 , ARG L:14BINDING SITE FOR RESIDUE MG L 9289
013AD4SOFTWAREGLU L:133BINDING SITE FOR RESIDUE MG L 9306
014AD5SOFTWAREGLU L:59BINDING SITE FOR RESIDUE MG L 9307
015AD6SOFTWARELEU L:62BINDING SITE FOR RESIDUE MG L 9309
016AD7SOFTWAREALA L:118 , ASP L:119 , HOH L:5871BINDING SITE FOR RESIDUE MG L 9314
017AD8SOFTWARESER L:93 , MG L:9218BINDING SITE FOR RESIDUE MG L 9437
018AD9SOFTWAREARG M:134 , SER M:389 , GLN M:390 , SER M:392 , GLN M:393 , PHE M:394 , LYS M:395 , ASP M:396 , HIS M:406 , ARG M:409 , SER M:411 , LEU M:413 , PRO M:444 , ILE M:452 , MET M:1000 , GLU M:1002 , MG M:9250 , HOH M:9524 , HOH M:9803BINDING SITE FOR RESIDUE RPT M 8002
019BC1SOFTWAREASN A:91BINDING SITE FOR RESIDUE MG A 9078
020BC2SOFTWARELYS A:83 , ASP A:168 , LYS C:696 , ASP C:698 , HOH C:9914BINDING SITE FOR RESIDUE MG A 9081
021BC3SOFTWARELEU A:45 , SER A:172 , HOH A:9510 , LYS C:696 , HOH C:9898BINDING SITE FOR RESIDUE MG A 9088
022BC4SOFTWARESER A:93 , LEU A:94 , ASP A:119BINDING SITE FOR RESIDUE MG A 9106
023BC5SOFTWARELEU A:28 , GLU A:29BINDING SITE FOR RESIDUE MG A 9111
024BC6SOFTWAREGLN A:16 , HOH A:9588 , HOH A:9655BINDING SITE FOR RESIDUE MG A 9125
025BC7SOFTWAREARG A:175 , HOH A:9641 , GLU C:693BINDING SITE FOR RESIDUE MG A 9156
026BC8SOFTWAREMG A:9357 , HOH A:9496BINDING SITE FOR RESIDUE MG A 9332
027BC9SOFTWARELYS A:102BINDING SITE FOR RESIDUE MG A 9342
028BD1SOFTWAREASN M:448 , HOH P:5490BINDING SITE FOR RESIDUE MG M 9190
029BD2SOFTWAREALA M:1116 , HOH M:2194 , HOH N:9602BINDING SITE FOR RESIDUE MG M 9195
030BD3SOFTWAREPRO M:769 , GLU M:770 , ARG N:65 , GLY P:374BINDING SITE FOR RESIDUE MG M 9196
031BD4SOFTWAREGLY M:951 , LEU M:952 , GLN M:969 , HOH M:2397BINDING SITE FOR RESIDUE MG M 9201
032BD5SOFTWAREGLN M:219 , GLY M:220 , HOH M:2088BINDING SITE FOR RESIDUE MG M 9203
033BD6SOFTWARETHR M:1010 , GLN M:1026 , HOH M:9815 , GLU N:651BINDING SITE FOR RESIDUE MG M 9205
034BD7SOFTWAREARG M:775 , PHE P:421BINDING SITE FOR RESIDUE MG M 9208
035BD8SOFTWAREASP M:714 , ARG M:820BINDING SITE FOR RESIDUE MG M 9210
036BD9SOFTWAREARG M:332 , LEU M:464 , GLY M:465 , PHE M:466BINDING SITE FOR RESIDUE MG M 9212
037CC1SOFTWARETHR A:223 , MG A:9016BINDING SITE FOR RESIDUE MG A 9345
038CC2SOFTWAREGLU A:134BINDING SITE FOR RESIDUE MG A 9352
039CC3SOFTWARELYS A:7 , PRO A:27BINDING SITE FOR RESIDUE MG A 9354
040CC4SOFTWAREMG A:9332BINDING SITE FOR RESIDUE MG A 9357
041CC5SOFTWAREHOH A:9506 , HOH A:9714BINDING SITE FOR RESIDUE MG A 9368
042CC6SOFTWAREHOH A:9688BINDING SITE FOR RESIDUE MG A 9460
043CC7SOFTWARETYR B:20 , GLY B:21 , ARG B:198 , ILE B:199BINDING SITE FOR RESIDUE MG B 9032
044CC8SOFTWARETHR B:51 , SER B:172 , ASP B:202BINDING SITE FOR RESIDUE MG B 9033
045CC9SOFTWAREGLN A:229 , HOH A:9572 , HOH B:9591BINDING SITE FOR RESIDUE MG B 9040
046CD1SOFTWAREGLN M:204 , MET M:222 , GLU M:224 , SER M:225 , ALA M:228BINDING SITE FOR RESIDUE MG M 9219
047CD2SOFTWAREPRO M:318 , HOH M:9836BINDING SITE FOR RESIDUE MG M 9220
048CD3SOFTWAREHOH M:2365 , HOH M:2462BINDING SITE FOR RESIDUE MG M 9222
049CD4SOFTWAREHOH M:9964BINDING SITE FOR RESIDUE MG M 9224
050CD5SOFTWARELYS M:1105BINDING SITE FOR RESIDUE MG M 9225
051CD6SOFTWAREGLU M:1104BINDING SITE FOR RESIDUE MG M 9227
052CD7SOFTWAREGLU M:1061BINDING SITE FOR RESIDUE MG M 9230
053CD8SOFTWAREGLU M:706 , MG M:9401BINDING SITE FOR RESIDUE MG M 9234
054CD9SOFTWAREHOH M:2335BINDING SITE FOR RESIDUE MG M 9237
055DC1SOFTWAREARG B:112 , HOH B:9577 , HOH B:9604BINDING SITE FOR RESIDUE MG B 9056
056DC2SOFTWARETHR B:67 , ILE B:68 , GLU B:73 , ASP B:74BINDING SITE FOR RESIDUE MG B 9059
057DC3SOFTWAREHOH B:9503 , HOH B:9704BINDING SITE FOR RESIDUE MG B 9080
058DC4SOFTWAREMG B:9458BINDING SITE FOR RESIDUE MG B 9083
059DC5SOFTWAREASP B:74 , ARG D:872 , MG D:9166BINDING SITE FOR RESIDUE MG B 9093
060DC6SOFTWAREARG B:18BINDING SITE FOR RESIDUE MG B 9103
061DC7SOFTWARELYS B:7 , HOH B:9535BINDING SITE FOR RESIDUE MG B 9104
062DC8SOFTWAREHOH B:9542BINDING SITE FOR RESIDUE MG B 9110
063DC9SOFTWAREGLU B:220BINDING SITE FOR RESIDUE MG B 9116
064DD1SOFTWAREARG M:626 , LEU M:637 , ASP M:638 , GLN M:639BINDING SITE FOR RESIDUE MG M 9239
065DD2SOFTWAREGLU M:1061 , SER M:1080BINDING SITE FOR RESIDUE MG M 9241
066DD3SOFTWARETHR M:368 , HOH M:9648BINDING SITE FOR RESIDUE MG M 9242
067DD4SOFTWAREPRO M:150 , ASP M:151 , TYR M:158 , HOH M:9961BINDING SITE FOR RESIDUE MG M 9247
068DD5SOFTWAREGLU M:55 , GLU M:57 , MG M:9409 , HOH M:9761BINDING SITE FOR RESIDUE MG M 9248
069DD6SOFTWARETYR M:998 , MET M:1000 , HOH M:2146 , HOH M:2203 , RPT M:8002BINDING SITE FOR RESIDUE MG M 9250
070DD7SOFTWAREARG M:512 , HOH M:9819BINDING SITE FOR RESIDUE MG M 9256
071DD8SOFTWAREVAL M:461BINDING SITE FOR RESIDUE MG M 9260
072DD9SOFTWAREASP M:736BINDING SITE FOR RESIDUE MG M 9261
073EC1SOFTWARESER A:47 , PHE B:32BINDING SITE FOR RESIDUE MG B 9131
074EC2SOFTWAREGLY B:135BINDING SITE FOR RESIDUE MG B 9358
075EC3SOFTWARETHR B:67 , HOH B:9636BINDING SITE FOR RESIDUE MG B 9359
076EC4SOFTWAREHOH B:9576BINDING SITE FOR RESIDUE MG B 9378
077EC5SOFTWAREGLU B:182BINDING SITE FOR RESIDUE MG B 9457
078EC6SOFTWAREGLN B:188 , MG B:9083 , HOH B:9689BINDING SITE FOR RESIDUE MG B 9458
079EC7SOFTWAREARG C:134 , GLN C:390 , SER C:392 , GLN C:393 , PHE C:394 , ASP C:396 , HIS C:406 , ARG C:409 , SER C:411 , LEU C:413 , PRO C:444 , ILE C:452 , HOH C:2343 , HOH C:9511 , HOH C:9562 , ASP F:323BINDING SITE FOR RESIDUE RPT C 8001
080EC8SOFTWAREGLN C:1026 , PHE C:1027 , GLU D:651BINDING SITE FOR RESIDUE MG C 9003
081EC9SOFTWAREASP C:1098 , VAL C:1099 , GLN C:1100 , ARG D:9BINDING SITE FOR RESIDUE MG C 9004
082ED1SOFTWARELYS M:1024BINDING SITE FOR RESIDUE MG M 9263
083ED2SOFTWAREGLU M:1041 , LYS N:1463BINDING SITE FOR RESIDUE MG M 9268
084ED3SOFTWAREHOH M:9729BINDING SITE FOR RESIDUE MG M 9273
085ED4SOFTWAREPRO M:247BINDING SITE FOR RESIDUE MG M 9275
086ED5SOFTWARELYS M:651 , GLY M:652 , ASP M:653BINDING SITE FOR RESIDUE MG M 9295
087ED6SOFTWAREGLY M:836 , HIS M:999 , MG M:9407 , VAL N:630BINDING SITE FOR RESIDUE MG M 9299
088ED7SOFTWAREASP M:492BINDING SITE FOR RESIDUE MG M 9300
089ED8SOFTWAREARG M:642 , VAL M:644 , GLN M:647 , HOH M:2455BINDING SITE FOR RESIDUE MG M 9310
090ED9SOFTWAREARG M:707 , HOH M:2225 , HOH M:9545BINDING SITE FOR RESIDUE MG M 9312
091FC1SOFTWARELEU C:290 , LYS C:299 , ASP C:300 , GLU C:301 , VAL C:302BINDING SITE FOR RESIDUE MG C 9015
092FC2SOFTWAREGLU C:210 , HOH M:2256BINDING SITE FOR RESIDUE MG C 9019
093FC3SOFTWAREMET C:1000 , HOH C:9499BINDING SITE FOR RESIDUE MG C 9020
094FC4SOFTWAREALA C:447 , HOH D:2130BINDING SITE FOR RESIDUE MG C 9021
095FC5SOFTWAREARG C:573 , ASP C:698BINDING SITE FOR RESIDUE MG C 9022
096FC6SOFTWARETYR C:826 , HOH C:2045BINDING SITE FOR RESIDUE MG C 9025
097FC7SOFTWAREMG C:9142BINDING SITE FOR RESIDUE MG C 9026
098FC8SOFTWAREGLU C:748 , GLY C:797 , GLY C:798 , HOH C:9787 , HOH C:9798BINDING SITE FOR RESIDUE MG C 9031
099FC9SOFTWAREHOH C:2017 , MG C:9350 , HOH C:9775BINDING SITE FOR RESIDUE MG C 9037
100FD1SOFTWARELEU M:695BINDING SITE FOR RESIDUE MG M 9319
101FD2SOFTWAREASP M:1106 , HOH M:2084BINDING SITE FOR RESIDUE MG M 9320
102FD3SOFTWAREPRO M:811BINDING SITE FOR RESIDUE MG M 9321
103FD4SOFTWAREASP M:976 , ARG M:978 , THR M:979 , HOH M:2188BINDING SITE FOR RESIDUE MG M 9324
104FD5SOFTWAREGLY M:608 , GLN M:639 , HOH M:9521BINDING SITE FOR RESIDUE MG M 9400
105FD6SOFTWAREGLU M:706 , TYR M:708 , LYS M:1004 , MG M:9234BINDING SITE FOR RESIDUE MG M 9401
106FD7SOFTWARELYS M:838 , MG M:9299BINDING SITE FOR RESIDUE MG M 9407
107FD8SOFTWAREGLU M:57 , MG M:9248BINDING SITE FOR RESIDUE MG M 9409
108FD9SOFTWAREARG M:198 , ALA M:228 , MET M:229 , ARG M:230BINDING SITE FOR RESIDUE MG M 9411
109GC1SOFTWAREGLU C:463 , HOH C:2085 , HOH C:9811BINDING SITE FOR RESIDUE MG C 9042
110GC2SOFTWARELEU C:717 , PHE C:761 , GLY C:763 , HOH C:2335BINDING SITE FOR RESIDUE MG C 9046
111GC3SOFTWAREARG C:422 , HOH C:2050BINDING SITE FOR RESIDUE MG C 9047
112GC4SOFTWAREGLU C:551 , PHE C:906 , LYS C:910BINDING SITE FOR RESIDUE MG C 9049
113GC5SOFTWAREVAL C:182 , GLY C:220 , HOH C:2061BINDING SITE FOR RESIDUE MG C 9050
114GC6SOFTWARETYR C:435 , TYR C:471 , HOH C:2120BINDING SITE FOR RESIDUE MG C 9051
115GC7SOFTWAREGLY C:169 , PRO C:170 , TRP C:171BINDING SITE FOR RESIDUE MG C 9053
116GC8SOFTWAREGLU C:1068BINDING SITE FOR RESIDUE MG C 9055
117GC9SOFTWARELEU C:546 , GLN C:565 , ARG C:842BINDING SITE FOR RESIDUE MG C 9061
118GD1SOFTWAREHOH M:2013 , HOH M:2413BINDING SITE FOR RESIDUE MG M 9412
119GD2SOFTWAREGLU M:20BINDING SITE FOR RESIDUE MG M 9416
120GD3SOFTWAREGLU M:205 , HOH M:2344BINDING SITE FOR RESIDUE MG M 9424
121GD4SOFTWAREHOH M:2303BINDING SITE FOR RESIDUE MG M 9434
122GD5SOFTWAREGLU M:1104 , LYS M:1105BINDING SITE FOR RESIDUE MG M 9440
123GD6SOFTWAREHOH M:2069 , HOH M:2085BINDING SITE FOR RESIDUE MG M 9441
124GD7SOFTWAREGLU M:224BINDING SITE FOR RESIDUE MG M 9442
125GD8SOFTWAREASP M:365 , SER M:366BINDING SITE FOR RESIDUE MG M 9447
126GD9SOFTWAREMET M:1BINDING SITE FOR RESIDUE MG M 9452
127HC1SOFTWAREHOH C:2029 , TRP P:241 , HOH P:5202BINDING SITE FOR RESIDUE MG C 9065
128HC2SOFTWAREGLU C:602 , HOH C:2123BINDING SITE FOR RESIDUE MG C 9067
129HC3SOFTWAREHOH C:2023BINDING SITE FOR RESIDUE MG C 9071
130HC4SOFTWARELEU C:815 , HOH C:2234 , HOH C:9856BINDING SITE FOR RESIDUE MG C 9076
131HC5SOFTWAREHOH P:3778BINDING SITE FOR RESIDUE MG C 9079
132HC6SOFTWAREARG C:573BINDING SITE FOR RESIDUE MG C 9086
133HC7SOFTWARELYS C:781BINDING SITE FOR RESIDUE MG C 9090
134HC8SOFTWAREILE C:108 , ASP C:365 , SER C:366 , LEU C:367 , THR C:368BINDING SITE FOR RESIDUE MG C 9092
135HC9SOFTWAREGLU C:11 , VAL C:12 , ILE C:13 , PRO C:14 , MG C:9119BINDING SITE FOR RESIDUE MG C 9107
136HD1SOFTWAREGLY M:180BINDING SITE FOR RESIDUE MG M 9471
137HD2SOFTWAREHOH M:9655BINDING SITE FOR RESIDUE MG M 9475
138HD3SOFTWAREARG M:49 , HOH M:2283BINDING SITE FOR RESIDUE MG M 9486
139HD4SOFTWARECYS N:58 , CYS N:60 , CYS N:73 , CYS N:76BINDING SITE FOR RESIDUE ZN N 7059
140HD5SOFTWARECYS N:1112 , CYS N:1194 , CYS N:1201 , CYS N:1204BINDING SITE FOR RESIDUE ZN N 7113
141HD6SOFTWARELEU N:920 , ALA N:1212 , ARG N:1213BINDING SITE FOR RESIDUE MG N 9179
142HD7SOFTWARETHR N:1196 , ARG N:1197BINDING SITE FOR RESIDUE MG N 9181
143HD8SOFTWAREILE N:786 , GLN N:906 , GLU N:907 , LYS N:908 , SER N:1026 , GLY N:1027BINDING SITE FOR RESIDUE MG N 9184
144HD9SOFTWAREHOH N:9957BINDING SITE FOR RESIDUE MG N 9185
145IC1SOFTWAREGLN C:80BINDING SITE FOR RESIDUE MG C 9112
146IC2SOFTWAREASN C:609 , PRO C:624 , LEU C:625BINDING SITE FOR RESIDUE MG C 9114
147IC3SOFTWARELEU C:620BINDING SITE FOR RESIDUE MG C 9115
148IC4SOFTWAREGLU C:11 , VAL C:12 , ILE C:13 , PRO C:14 , MG C:9107BINDING SITE FOR RESIDUE MG C 9119
149IC5SOFTWAREGLU C:585BINDING SITE FOR RESIDUE MG C 9122
150IC6SOFTWAREARG C:619 , HOH C:2082 , HOH C:9877BINDING SITE FOR RESIDUE MG C 9128
151IC7SOFTWAREGLN C:567 , LYS C:846BINDING SITE FOR RESIDUE MG C 9138
152IC8SOFTWAREMG C:9026BINDING SITE FOR RESIDUE MG C 9142
153IC9SOFTWAREARG C:978 , HOH C:2041 , HOH D:2309BINDING SITE FOR RESIDUE MG C 9143
154ID1SOFTWAREARG N:1130 , SER N:1131 , LEU N:1132BINDING SITE FOR RESIDUE MG N 9186
155ID2SOFTWAREHOH N:2068BINDING SITE FOR RESIDUE MG N 9187
156ID3SOFTWAREASN N:143 , GLY N:144 , VAL N:145 , HOH N:9979BINDING SITE FOR RESIDUE MG N 9192
157ID4SOFTWARELYS N:961 , HOH N:2065 , HOH N:2332BINDING SITE FOR RESIDUE MG N 9193
158ID5SOFTWAREPHE N:251 , HOH N:9721 , HOH N:9842BINDING SITE FOR RESIDUE MG N 9194
159ID6SOFTWARELEU N:1390 , GLU N:1391 , HOH N:2087 , HOH N:2180 , HOH N:2377BINDING SITE FOR RESIDUE MG N 9199
160ID7SOFTWAREASP N:107 , PRO N:109 , LYS N:111BINDING SITE FOR RESIDUE MG N 9200
161ID8SOFTWAREGLN N:1359 , HOH N:2350 , HOH N:9945BINDING SITE FOR RESIDUE MG N 9206
162ID9SOFTWARESER N:1439 , THR N:1443 , HOH N:2462BINDING SITE FOR RESIDUE MG N 9207
163JC1SOFTWAREGLU C:814 , LEU C:815BINDING SITE FOR RESIDUE MG C 9145
164JC2SOFTWAREASP C:787BINDING SITE FOR RESIDUE MG C 9149
165JC3SOFTWARELEU C:107 , LYS C:109BINDING SITE FOR RESIDUE MG C 9154
166JC4SOFTWAREGLU C:75BINDING SITE FOR RESIDUE MG C 9164
167JC5SOFTWAREARG C:422BINDING SITE FOR RESIDUE MG C 9168
168JC6SOFTWAREHOH C:2442BINDING SITE FOR RESIDUE MG C 9169
169JC7SOFTWARETYR C:202 , ASP C:300 , GLU C:301BINDING SITE FOR RESIDUE MG C 9170
170JC8SOFTWAREARG C:648BINDING SITE FOR RESIDUE MG C 9175
171JC9SOFTWAREGLN C:1026 , HOH D:9925 , SER F:340 , VAL F:342BINDING SITE FOR RESIDUE MG C 9176
172JD1SOFTWAREPRO N:706 , PHE N:736 , ASN N:737BINDING SITE FOR RESIDUE MG N 9211
173JD2SOFTWAREARG N:1197 , ARG N:1373 , GLN N:1374 , LYS N:1377BINDING SITE FOR RESIDUE MG N 9214
174JD3SOFTWAREGLY N:188 , ARG N:441BINDING SITE FOR RESIDUE MG N 9215
175JD4SOFTWAREASN N:1116 , HOH N:2313BINDING SITE FOR RESIDUE MG N 9217
176JD5SOFTWAREARG N:1096BINDING SITE FOR RESIDUE MG N 9221
177JD6SOFTWAREGLU N:183 , LYS N:187 , MG N:9327 , HOH N:9930BINDING SITE FOR RESIDUE MG N 9229
178JD7SOFTWAREGLU N:965 , HOH N:2437BINDING SITE FOR RESIDUE MG N 9231
179JD8SOFTWARETHR N:1196BINDING SITE FOR RESIDUE MG N 9232
180JD9SOFTWAREGLN N:1235 , THR N:1237 , HOH N:2255 , HOH N:2360BINDING SITE FOR RESIDUE MG N 9233
181KC1SOFTWAREPRO C:769 , GLU C:770 , LYS F:373 , GLY F:374BINDING SITE FOR RESIDUE MG C 9178
182KC2SOFTWAREHOH C:2017 , MG C:9037 , MG C:9461BINDING SITE FOR RESIDUE MG C 9350
183KC3SOFTWAREASP C:87 , ARG C:707 , ARG C:824BINDING SITE FOR RESIDUE MG C 9360
184KC4SOFTWAREHOH C:2032BINDING SITE FOR RESIDUE MG C 9362
185KC5SOFTWARELYS C:1004 , HOH C:2243BINDING SITE FOR RESIDUE MG C 9377
186KC6SOFTWAREHOH C:9825BINDING SITE FOR RESIDUE MG C 9381
187KC7SOFTWAREGLU C:764 , SER C:765BINDING SITE FOR RESIDUE MG C 9391
188KC8SOFTWAREHOH C:2018BINDING SITE FOR RESIDUE MG C 9394
189KC9SOFTWAREHOH C:2351 , MG C:9350BINDING SITE FOR RESIDUE MG C 9461
190KD1SOFTWAREVAL N:530 , ASP N:531 , GLY N:532BINDING SITE FOR RESIDUE MG N 9236
191KD2SOFTWAREPRO N:772 , ASP N:1208 , HIS N:1367BINDING SITE FOR RESIDUE MG N 9238
192KD3SOFTWARELEU N:1468BINDING SITE FOR RESIDUE MG N 9240
193KD4SOFTWAREILE N:133 , LEU N:135 , GLN N:151 , LEU N:153BINDING SITE FOR RESIDUE MG N 9243
194KD5SOFTWARETHR N:1431 , LYS N:1432 , HOH N:2182 , HOH N:2190BINDING SITE FOR RESIDUE MG N 9249
195KD6SOFTWARELYS N:187 , ARG N:441BINDING SITE FOR RESIDUE MG N 9259
196KD7SOFTWAREHOH N:2722BINDING SITE FOR RESIDUE MG N 9265
197KD8SOFTWARETYR N:1165BINDING SITE FOR RESIDUE MG N 9267
198KD9SOFTWAREGLU N:1501 , ALA N:1502BINDING SITE FOR RESIDUE MG N 9269
199LC1SOFTWARECYS D:58 , CYS D:60 , CYS D:73 , CYS D:76BINDING SITE FOR RESIDUE ZN D 7058
200LC2SOFTWARECYS D:1112 , ARG D:1189 , CYS D:1194 , CYS D:1201 , CYS D:1204BINDING SITE FOR RESIDUE ZN D 7112
201LC3SOFTWARETYR D:23 , GLY D:24 , GLU D:25 , VAL D:26 , ILE D:49 , GLY D:91 , HIS D:92BINDING SITE FOR RESIDUE MG D 9001
202LC4SOFTWAREPRO C:440 , ARG D:1078BINDING SITE FOR RESIDUE MG D 9005
203LC5SOFTWAREGLU D:471 , ALA D:472 , LYS D:475BINDING SITE FOR RESIDUE MG D 9006
204LC6SOFTWAREVAL D:1101 , TYR D:1378 , SER D:1427 , ALA D:1428 , THR D:1431 , HOH D:9888BINDING SITE FOR RESIDUE MG D 9009
205LC7SOFTWAREHOH D:9885 , HOH N:9852BINDING SITE FOR RESIDUE MG D 9011
206LC8SOFTWAREILE D:900 , GLN D:901 , LEU D:902 , HOH D:9823BINDING SITE FOR RESIDUE MG D 9014
207LC9SOFTWAREVAL C:1081 , LEU D:1468BINDING SITE FOR RESIDUE MG D 9017
208LD1SOFTWAREALA N:1416 , TRP N:1417BINDING SITE FOR RESIDUE MG N 9270
209LD2SOFTWAREGLU N:576 , ASP N:579 , ALA N:580 , ASP N:583 , ARG N:587BINDING SITE FOR RESIDUE MG N 9271
210LD3SOFTWAREARG N:1266BINDING SITE FOR RESIDUE MG N 9274
211LD4SOFTWARELYS N:494 , HOH N:2311BINDING SITE FOR RESIDUE MG N 9276
212LD5SOFTWARETYR N:1318BINDING SITE FOR RESIDUE MG N 9286
213LD6SOFTWAREGLU N:811BINDING SITE FOR RESIDUE MG N 9287
214LD7SOFTWAREGLU N:157BINDING SITE FOR RESIDUE MG N 9288
215LD8SOFTWAREGLN N:1033BINDING SITE FOR RESIDUE MG N 9292
216LD9SOFTWAREHOH N:2175BINDING SITE FOR RESIDUE MG N 9293
217MC1SOFTWAREHOH A:9644 , HOH A:9685 , GLY D:1157 , ARG D:1159BINDING SITE FOR RESIDUE MG D 9018
218MC2SOFTWARELYS D:610 , ASP F:326 , HOH F:9660BINDING SITE FOR RESIDUE MG D 9023
219MC3SOFTWARELYS D:2 , LYS D:3BINDING SITE FOR RESIDUE MG D 9024
220MC4SOFTWAREILE D:631 , ASP D:739 , PHE D:740 , ASP D:741 , GLY D:742 , ASP D:743BINDING SITE FOR RESIDUE MG D 9028
221MC5SOFTWAREPRO D:15 , GLU D:16BINDING SITE FOR RESIDUE MG D 9029
222MC6SOFTWAREARG D:986 , TYR D:989BINDING SITE FOR RESIDUE MG D 9030
223MC7SOFTWAREASP D:107 , ASN D:1442 , HIS D:1445BINDING SITE FOR RESIDUE MG D 9034
224MC8SOFTWAREPHE D:806 , ALA D:807 , GLY D:831 , ARG D:832 , GLU D:833BINDING SITE FOR RESIDUE MG D 9036
225MC9SOFTWARETYR D:1205 , ASP D:1208 , GLU D:1219 , VAL D:1224BINDING SITE FOR RESIDUE MG D 9038
226MD1SOFTWAREGLY N:139 , ALA N:140 , ILE N:141 , PRO N:146 , VAL N:147BINDING SITE FOR RESIDUE MG N 9298
227MD2SOFTWAREGLN N:529 , HOH N:2414BINDING SITE FOR RESIDUE MG N 9302
228MD3SOFTWAREARG N:1327BINDING SITE FOR RESIDUE MG N 9303
229MD4SOFTWAREARG N:488 , HOH N:2659BINDING SITE FOR RESIDUE MG N 9304
230MD5SOFTWAREHOH C:2392 , HOH N:2598BINDING SITE FOR RESIDUE MG N 9311
231MD6SOFTWAREHIS N:1242BINDING SITE FOR RESIDUE MG N 9313
232MD7SOFTWAREVAL N:213 , PRO N:390 , HOH N:9727BINDING SITE FOR RESIDUE MG N 9316
233MD8SOFTWAREASN N:1116BINDING SITE FOR RESIDUE MG N 9317
234MD9SOFTWAREPHE N:403BINDING SITE FOR RESIDUE MG N 9318
235NC1SOFTWAREHOH D:2126 , HOH D:9608 , GLU P:149BINDING SITE FOR RESIDUE MG D 9039
236NC2SOFTWAREHOH D:2492BINDING SITE FOR RESIDUE MG D 9041
237NC3SOFTWAREILE D:371 , ASP D:372 , PRO D:373BINDING SITE FOR RESIDUE MG D 9052
238NC4SOFTWAREGLU D:1109 , ALA D:1110 , THR D:1196 , HOH D:2070 , HOH D:2465BINDING SITE FOR RESIDUE MG D 9054
239NC5SOFTWAREVAL D:1128 , THR D:1129 , ARG D:1130 , SER D:1131BINDING SITE FOR RESIDUE MG D 9058
240NC6SOFTWAREPRO D:826 , ILE D:827 , LYS D:828 , VAL D:829 , SER D:835 , VAL D:836 , GLY D:837BINDING SITE FOR RESIDUE MG D 9062
241NC7SOFTWAREPHE D:1241 , HOH D:2141BINDING SITE FOR RESIDUE MG D 9063
242NC8SOFTWAREALA D:807 , GLU D:833 , HOH D:9904BINDING SITE FOR RESIDUE MG D 9064
243NC9SOFTWAREHOH D:2457 , MG D:9339BINDING SITE FOR RESIDUE MG D 9069
244ND1SOFTWAREPRO N:1419BINDING SITE FOR RESIDUE MG N 9322
245ND2SOFTWAREARG N:921BINDING SITE FOR RESIDUE MG N 9323
246ND3SOFTWARELYS N:466 , HOH N:2652BINDING SITE FOR RESIDUE MG N 9326
247ND4SOFTWARELYS N:187 , HOH N:2200 , MG N:9229BINDING SITE FOR RESIDUE MG N 9327
248ND5SOFTWAREGLY N:113 , LEU N:116 , LEU N:118 , SER N:119 , ALA N:120BINDING SITE FOR RESIDUE MG N 9398
249ND6SOFTWAREPRO N:484 , SER N:485 , ARG N:488BINDING SITE FOR RESIDUE MG N 9402
250ND7SOFTWAREARG N:6 , ARG N:1482BINDING SITE FOR RESIDUE MG N 9415
251ND8SOFTWAREPRO N:1048BINDING SITE FOR RESIDUE MG N 9417
252ND9SOFTWAREGLN N:901 , HOH N:2537BINDING SITE FOR RESIDUE MG N 9418
253OC1SOFTWAREPRO D:1121 , GLN D:1184 , GLU D:1185 , HOH D:9635BINDING SITE FOR RESIDUE MG D 9070
254OC2SOFTWAREARG D:1239BINDING SITE FOR RESIDUE MG D 9072
255OC3SOFTWARELEU D:1173 , LYS D:1176BINDING SITE FOR RESIDUE MG D 9073
256OC4SOFTWAREASP D:1251 , ILE D:1252 , HOH D:2249BINDING SITE FOR RESIDUE MG D 9077
257OC5SOFTWAREARG D:546 , MG F:9035BINDING SITE FOR RESIDUE MG D 9084
258OC6SOFTWAREHOH D:9696BINDING SITE FOR RESIDUE MG D 9085
259OC7SOFTWARELEU D:227 , HOH F:9581BINDING SITE FOR RESIDUE MG D 9087
260OC8SOFTWAREPRO D:172 , GLU D:389 , PRO D:390 , HOH D:2021BINDING SITE FOR RESIDUE MG D 9089
261OC9SOFTWAREHOH D:2281 , HOH D:9655 , HOH D:9973BINDING SITE FOR RESIDUE MG D 9091
262OD1SOFTWARELYS N:684 , GLU N:686BINDING SITE FOR RESIDUE MG N 9419
263OD2SOFTWAREHOH N:2742BINDING SITE FOR RESIDUE MG N 9423
264OD3SOFTWAREHOH N:2625BINDING SITE FOR RESIDUE MG N 9425
265OD4SOFTWAREASP N:903BINDING SITE FOR RESIDUE MG N 9426
266OD5SOFTWAREHOH N:9761BINDING SITE FOR RESIDUE MG N 9427
267OD6SOFTWAREHOH N:2105 , HOH N:2413BINDING SITE FOR RESIDUE MG N 9428
268OD7SOFTWAREPRO N:238 , GLU N:240BINDING SITE FOR RESIDUE MG N 9429
269OD8SOFTWAREILE N:1252BINDING SITE FOR RESIDUE MG N 9430
270OD9SOFTWAREVAL N:196BINDING SITE FOR RESIDUE MG N 9448
271PC1SOFTWAREPRO D:772 , ASP D:1208 , HIS D:1367BINDING SITE FOR RESIDUE MG D 9095
272PC2SOFTWAREMG D:9166BINDING SITE FOR RESIDUE MG D 9096
273PC3SOFTWAREHOH D:2534BINDING SITE FOR RESIDUE MG D 9100
274PC4SOFTWARELYS D:800BINDING SITE FOR RESIDUE MG D 9102
275PC5SOFTWAREHOH D:9977BINDING SITE FOR RESIDUE MG D 9108
276PC6SOFTWARELYS D:1009 , ASN D:1010BINDING SITE FOR RESIDUE MG D 9113
277PC7SOFTWAREHOH C:2122 , ARG D:534BINDING SITE FOR RESIDUE MG D 9117
278PC8SOFTWAREMET D:1376BINDING SITE FOR RESIDUE MG D 9118
279PC9SOFTWAREGLN D:727 , HOH D:2010 , HOH D:2426BINDING SITE FOR RESIDUE MG D 9120
280PD1SOFTWARELEU N:204BINDING SITE FOR RESIDUE MG N 9449
281PD2SOFTWAREARG N:1058BINDING SITE FOR RESIDUE MG N 9450
282PD3SOFTWAREGLU L:77 , ARG N:872BINDING SITE FOR RESIDUE MG N 9465
283PD4SOFTWARELEU M:1097 , ALA N:11 , LEU N:12 , PHE N:104 , ALA N:1451BINDING SITE FOR RESIDUE MG N 9467
284PD5SOFTWAREHOH N:2646BINDING SITE FOR RESIDUE MG N 9468
285PD6SOFTWAREMET N:527BINDING SITE FOR RESIDUE MG N 9473
286PD7SOFTWAREGLN N:529BINDING SITE FOR RESIDUE MG N 9484
287PD8SOFTWAREGLY O:34 , PHE O:35 , PRO O:94 , GLY O:95BINDING SITE FOR RESIDUE MG O 9197
288PD9SOFTWARETHR O:50 , MG O:9254BINDING SITE FOR RESIDUE MG O 9198
289QC1SOFTWAREGLN D:529 , VAL D:530 , HOH D:2330BINDING SITE FOR RESIDUE MG D 9121
290QC2SOFTWARELEU D:387BINDING SITE FOR RESIDUE MG D 9127
291QC3SOFTWAREVAL D:72BINDING SITE FOR RESIDUE MG D 9130
292QC4SOFTWAREMG D:9392 , HOH D:9864BINDING SITE FOR RESIDUE MG D 9132
293QC5SOFTWAREGLU D:1012 , GLU D:1013BINDING SITE FOR RESIDUE MG D 9133
294QC6SOFTWAREARG D:832 , MG D:9385BINDING SITE FOR RESIDUE MG D 9135
295QC7SOFTWARELYS D:1304 , HOH D:2299 , HOH D:2323BINDING SITE FOR RESIDUE MG D 9137
296QC8SOFTWAREMG D:9167BINDING SITE FOR RESIDUE MG D 9140
297QC9SOFTWAREASP D:469 , HOH D:2533 , HOH D:9997BINDING SITE FOR RESIDUE MG D 9141
298QD1SOFTWARETHR O:50 , HOH O:4863 , HOH O:5208 , MG O:9198BINDING SITE FOR RESIDUE MG O 9254
299QD2SOFTWAREHIS N:640 , ALA O:2 , GLU O:3BINDING SITE FOR RESIDUE MG O 9266
300QD3SOFTWARELYS O:8BINDING SITE FOR RESIDUE MG O 9420
301QD4SOFTWAREHOH O:3760BINDING SITE FOR RESIDUE MG O 9439
302QD5SOFTWARESER P:340BINDING SITE FOR RESIDUE MG P 9189
303QD6SOFTWAREARG P:82BINDING SITE FOR RESIDUE MG P 9202
304QD7SOFTWARESER P:165BINDING SITE FOR RESIDUE MG P 9209
305QD8SOFTWAREHOH P:5289BINDING SITE FOR RESIDUE MG P 9216
306QD9SOFTWARELYS M:1072 , LEU P:349BINDING SITE FOR RESIDUE MG P 9226
307RC1SOFTWAREARG D:879 , ASP D:903 , MG D:9453BINDING SITE FOR RESIDUE MG D 9146
308RC2SOFTWAREGLU D:1161BINDING SITE FOR RESIDUE MG D 9147
309RC3SOFTWAREHOH D:2450BINDING SITE FOR RESIDUE MG D 9150
310RC4SOFTWAREGLU D:74BINDING SITE FOR RESIDUE MG D 9152
311RC5SOFTWARELYS D:654BINDING SITE FOR RESIDUE MG D 9158
312RC6SOFTWAREHOH D:2565BINDING SITE FOR RESIDUE MG D 9161
313RC7SOFTWARELYS D:1314BINDING SITE FOR RESIDUE MG D 9163
314RC8SOFTWAREGLU D:1182 , HOH D:2383 , HOH D:9950BINDING SITE FOR RESIDUE MG D 9165
315RC9SOFTWAREASP B:74 , MG B:9093 , ARG D:872 , MG D:9096BINDING SITE FOR RESIDUE MG D 9166
316RD1SOFTWAREASN N:669 , LYS P:417 , LEU P:418 , ARG P:419 , ASP P:420 , HOH P:4426 , HOH P:4624BINDING SITE FOR RESIDUE MG P 9228
317RD2SOFTWAREMG P:9255BINDING SITE FOR RESIDUE MG P 9235
318RD3SOFTWAREARG P:205 , MG P:9235BINDING SITE FOR RESIDUE MG P 9255
319RD4SOFTWAREGLU P:228BINDING SITE FOR RESIDUE MG P 9277
320RD5SOFTWAREARG P:273 , HOH P:4488BINDING SITE FOR RESIDUE MG P 9280
321RD6SOFTWAREGLN P:277 , GLN P:280BINDING SITE FOR RESIDUE MG P 9285
322RD7SOFTWARELYS P:403 , LYS P:407 , HOH P:6065BINDING SITE FOR RESIDUE MG P 9297
323RD8SOFTWAREARG D:1310 , ARG D:1327 , HOH D:2477BINDING SITE FOR RESIDUE MG P 9315
324RD9SOFTWAREARG P:82BINDING SITE FOR RESIDUE MG P 9325
325SC1SOFTWAREMG D:9140BINDING SITE FOR RESIDUE MG D 9167
326SC2SOFTWAREALA D:1180 , HOH D:2537 , HOH D:9912BINDING SITE FOR RESIDUE MG D 9174
327SC3SOFTWAREGLU D:183 , VAL D:216 , ARG D:220 , ALA D:221 , HOH D:2267 , HOH D:2275BINDING SITE FOR RESIDUE MG D 9328
328SC4SOFTWAREGLU D:1405 , ARG D:1406 , ALA D:1409 , GLU D:1410 , GLY D:1411BINDING SITE FOR RESIDUE MG D 9329
329SC5SOFTWARELEU C:950 , PHE D:1017 , ASN D:1018 , PRO D:1019 , HOH D:9489BINDING SITE FOR RESIDUE MG D 9330
330SC6SOFTWAREHOH D:2142BINDING SITE FOR RESIDUE MG D 9331
331SC7SOFTWARELEU D:558 , ALA D:559 , GLU F:129 , ARG F:132BINDING SITE FOR RESIDUE MG D 9333
332SC8SOFTWAREMG D:9335BINDING SITE FOR RESIDUE MG D 9334
333SC9SOFTWAREMG D:9334 , HOH D:9752BINDING SITE FOR RESIDUE MG D 9335
334SD1SOFTWAREARG P:364 , PHE P:390 , HOH P:3644 , HOH P:6036BINDING SITE FOR RESIDUE MG P 9399
335SD2SOFTWARESER P:359 , LEU P:361 , SER P:362 , HOH P:5559BINDING SITE FOR RESIDUE MG P 9436
336TC1SOFTWAREHOH D:2237BINDING SITE FOR RESIDUE MG D 9336
337TC2SOFTWAREHOH D:9875BINDING SITE FOR RESIDUE MG D 9337
338TC3SOFTWAREGLU D:898BINDING SITE FOR RESIDUE MG D 9338
339TC4SOFTWARELEU D:250 , PHE D:251 , HOH D:2457 , MG D:9069BINDING SITE FOR RESIDUE MG D 9339
340TC5SOFTWAREASP D:542 , THR D:592 , ASN D:593BINDING SITE FOR RESIDUE MG D 9341
341TC6SOFTWAREHOH D:2613 , LYS E:25BINDING SITE FOR RESIDUE MG D 9346
342TC7SOFTWAREGLU D:1185BINDING SITE FOR RESIDUE MG D 9347
343TC8SOFTWAREGLN D:744BINDING SITE FOR RESIDUE MG D 9349
344TC9SOFTWAREASP D:1126 , THR D:1129 , ARG D:1130 , HOH D:9663BINDING SITE FOR RESIDUE MG D 9351
345UC1SOFTWARELEU D:1166 , SER D:1167 , ASP D:1170 , VAL D:1171BINDING SITE FOR RESIDUE MG D 9367
346UC2SOFTWAREHOH D:2531 , HOH D:9645BINDING SITE FOR RESIDUE MG D 9369
347UC3SOFTWAREARG D:1133BINDING SITE FOR RESIDUE MG D 9373
348UC4SOFTWAREGLY D:1248 , ALA D:1249BINDING SITE FOR RESIDUE MG D 9374
349UC5SOFTWARELEU D:1429 , SER D:1430 , GLN D:1441BINDING SITE FOR RESIDUE MG D 9379
350UC6SOFTWAREMG D:9135BINDING SITE FOR RESIDUE MG D 9385
351UC7SOFTWARELYS D:646 , TRP D:688BINDING SITE FOR RESIDUE MG D 9386
352UC8SOFTWAREGLN D:1005 , HOH D:2445BINDING SITE FOR RESIDUE MG D 9388
353UC9SOFTWAREMG D:9132BINDING SITE FOR RESIDUE MG D 9392
354VC1SOFTWAREMG D:9146BINDING SITE FOR RESIDUE MG D 9453
355VC2SOFTWAREGLU E:67 , THR E:70 , GLY E:71 , ARG E:72 , LEU E:73 , HOH E:9533BINDING SITE FOR RESIDUE MG E 9007
356VC3SOFTWAREHOH E:9544 , HOH E:9562BINDING SITE FOR RESIDUE MG E 9045
357VC4SOFTWARELEU E:40 , GLU E:41 , PRO E:42 , GLU E:43 , GLU E:44 , ARG E:45 , HOH E:9537BINDING SITE FOR RESIDUE MG E 9074
358VC5SOFTWAREHOH E:9522BINDING SITE FOR RESIDUE MG E 9155
359VC6SOFTWARETHR F:415 , ARG F:416BINDING SITE FOR RESIDUE MG F 9008
360VC7SOFTWAREMG D:9084 , GLY F:206 , LEU F:207BINDING SITE FOR RESIDUE MG F 9035
361VC8SOFTWARELEU F:371 , ARG F:372 , HOH F:9727 , HOH F:9796BINDING SITE FOR RESIDUE MG F 9048
362VC9SOFTWAREASN D:549 , HOH D:9935 , GLN F:254BINDING SITE FOR RESIDUE MG F 9057
363WC1SOFTWAREGLU F:395BINDING SITE FOR RESIDUE MG F 9060
364WC2SOFTWAREARG F:256BINDING SITE FOR RESIDUE MG F 9098
365WC3SOFTWAREHOH F:9899BINDING SITE FOR RESIDUE MG F 9099
366WC4SOFTWARESER F:359 , LYS F:360 , LEU F:361 , MG F:9159 , HOH F:9831BINDING SITE FOR RESIDUE MG F 9109
367WC5SOFTWAREGLU F:289 , HOH F:9698BINDING SITE FOR RESIDUE MG F 9123
368WC6SOFTWAREARG F:372BINDING SITE FOR RESIDUE MG F 9139
369WC7SOFTWAREHIS F:263 , HOH F:9824BINDING SITE FOR RESIDUE MG F 9148
370WC8SOFTWAREGLU F:384BINDING SITE FOR RESIDUE MG F 9157
371WC9SOFTWARELEU F:361 , SER F:362 , GLU F:363 , MG F:9109BINDING SITE FOR RESIDUE MG F 9159
372XC1SOFTWARELEU F:147 , HOH F:9674 , HOH F:9851BINDING SITE FOR RESIDUE MG F 9172
373XC2SOFTWARELYS F:134BINDING SITE FOR RESIDUE MG F 9356
374XC3SOFTWARELYS F:74BINDING SITE FOR RESIDUE MG F 9370
375XC4SOFTWAREHOH F:9638 , HOH F:9750BINDING SITE FOR RESIDUE MG F 9375
376XC5SOFTWAREHOH F:9833BINDING SITE FOR RESIDUE MG F 9382
377XC6SOFTWAREARG F:364BINDING SITE FOR RESIDUE MG F 9387
378XC7SOFTWAREASN F:269 , ARG F:273 , ARG F:276 , HOH F:9874BINDING SITE FOR RESIDUE MG F 9390
379XC8SOFTWAREALA F:357 , LYS F:360 , LEU F:361BINDING SITE FOR RESIDUE MG F 9393
380XC9SOFTWAREILE K:58 , GLU K:59 , ASP K:60 , ASN K:139 , HOH K:4285BINDING SITE FOR RESIDUE MG K 9180
381YC1SOFTWARETHR K:51 , VAL K:170 , HOH K:3290 , HOH K:4681 , HOH K:5166BINDING SITE FOR RESIDUE MG K 9188
382YC2SOFTWAREVAL K:13 , HOH K:5841 , GLN L:229 , HOH L:4440 , HOH N:2068BINDING SITE FOR RESIDUE MG K 9191
383YC3SOFTWARETYR K:57 , GLU K:141 , ASP K:160 , ARG K:161BINDING SITE FOR RESIDUE MG K 9213
384YC4SOFTWARELYS K:7 , PRO K:27 , LEU K:28BINDING SITE FOR RESIDUE MG K 9223
385YC5SOFTWAREALA K:118 , ASP K:119 , HOH K:5383BINDING SITE FOR RESIDUE MG K 9244
386YC6SOFTWAREARG K:137 , ASN K:139BINDING SITE FOR RESIDUE MG K 9251
387YC7SOFTWAREGLN K:95 , HOH K:6281BINDING SITE FOR RESIDUE MG K 9257
388YC8SOFTWAREASP K:60 , ARG K:137 , HOH K:4754BINDING SITE FOR RESIDUE MG K 9264
389YC9SOFTWAREGLN K:16BINDING SITE FOR RESIDUE MG K 9290
390ZC1SOFTWAREGLU D:404 , ARG D:414BINDING SITE FOR RESIDUE MG K 9301
391ZC2SOFTWAREALA K:52 , THR K:54 , PHE K:171BINDING SITE FOR RESIDUE MG K 9410
392ZC3SOFTWAREMG K:9470BINDING SITE FOR RESIDUE MG K 9433
393ZC4SOFTWAREMG K:9433BINDING SITE FOR RESIDUE MG K 9470
394ZC5SOFTWARELEU L:28 , GLU L:29 , ARG L:189 , ASP L:191 , LEU L:192BINDING SITE FOR RESIDUE MG L 9182
395ZC6SOFTWARETHR L:51 , VAL L:170 , SER L:172 , ASP L:202 , HOH L:5477BINDING SITE FOR RESIDUE MG L 9183
396ZC7SOFTWARESER L:93 , HOH L:4310 , HOH L:6267 , MG L:9437BINDING SITE FOR RESIDUE MG L 9218
397ZC8SOFTWARELYS L:159BINDING SITE FOR RESIDUE MG L 9245
398ZC9SOFTWAREARG L:219BINDING SITE FOR RESIDUE MG L 9246

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2A69)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Glu A:26 -Pro A:27
2Glu B:26 -Pro B:27
3Leu C:165 -Pro C:166
4Glu K:26 -Pro K:27
5Glu L:26 -Pro L:27
6Leu M:165 -Pro M:166

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2A69)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_BETAPS01166 RNA polymerases beta chain signature.RPOB_THET8836-848
 
  2C:836-848
M:836-848
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_BETAPS01166 RNA polymerases beta chain signature.RPOB_THET8836-848
 
  1C:836-848
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RNA_POL_BETAPS01166 RNA polymerases beta chain signature.RPOB_THET8836-848
 
  1-
M:836-848

(-) Exons   (0, 0)

(no "Exon" information available for 2A69)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:229
 aligned with RPOA_THET8 | Q5SHR6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          RPOA_THET8      1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
               SCOP domains d2a69a1 A:1-49,A:173-229 RNA polymerase alpha    d2a69a2 A:50-172 RNA polymerase alpha subunit                                                                              d2a69a1 A:1-49,A:173-229 RNA polymerase alpha             SCOP domains
               CATH domains 2a69A01 A:1-49,A:172-225                         2a69A02 A:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                          2a69A01 A:1-49,A:172-225                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeeee.eehhhhhh.......ee..ee...eeeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 A    1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         

Chain A from PDB  Type:PROTEIN  Length:229
 aligned with RPOA_THETH | Q9Z9H6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          RPOA_THETH      1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
               SCOP domains d2a69a1 A:1-49,A:173-229 RNA polymerase alpha    d2a69a2 A:50-172 RNA polymerase alpha subunit                                                                              d2a69a1 A:1-49,A:173-229 RNA polymerase alpha             SCOP domains
               CATH domains 2a69A01 A:1-49,A:172-225                         2a69A02 A:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                          2a69A01 A:1-49,A:172-225                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeeee.eehhhhhh.......ee..ee...eeeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 A    1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         

Chain B from PDB  Type:PROTEIN  Length:229
 aligned with RPOA_THET8 | Q5SHR6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          RPOA_THET8      1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
               SCOP domains d2a69b1 B:1-49,B:173-229 RNA polymerase alpha    d2a69b2 B:50-172 RNA polymerase alpha subunit                                                                              d2a69b1 B:1-49,B:173-229 RNA polymerase alpha             SCOP domains
               CATH domains 2a69B01 B:1-49,B:172-225                         2a69B02 B:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                          2a69B01 B:1-49,B:172-225                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeee.eeehhhhhh.......ee..eee..eeeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 B    1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         

Chain B from PDB  Type:PROTEIN  Length:229
 aligned with RPOA_THETH | Q9Z9H6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          RPOA_THETH      1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
               SCOP domains d2a69b1 B:1-49,B:173-229 RNA polymerase alpha    d2a69b2 B:50-172 RNA polymerase alpha subunit                                                                              d2a69b1 B:1-49,B:173-229 RNA polymerase alpha             SCOP domains
               CATH domains 2a69B01 B:1-49,B:172-225                         2a69B02 B:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                          2a69B01 B:1-49,B:172-225                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeee.eeehhhhhh.......ee..eee..eeeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 B    1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         

Chain C from PDB  Type:PROTEIN  Length:1119
 aligned with RPOB_THET8 | Q8RQE9 from UniProtKB/Swiss-Prot  Length:1119

    Alignment length:1119
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110         
          RPOB_THET8      1 MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR 1119
               SCOP domains d2a69c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains -2a69C012a69C02 C:9-143,C:324-470,C:536-592  [code=3.90.1100.10, no name defined]                                                              2a69C03 C:144-323  [code=3.90.1110.10, no name defined]                                                                                                                             2a69C02 C:9-143,C:324-470,C:536-592  [code=3.90.1100.10, no name defined]                                                                          2a69C04 C:471-535  [code=2.30.150.10, no name defined]           2a69C02 C:9-143,C:324-470,C:536-592                      2a69C05 C:593-667  [code=2.40.50.100, no name defined]                     2a69C01                        2a69C06 C:699-831  [code=2.40.50.150, no name defined]                                                                               2a69C01 C:2-8,C:668-698,C:832-1004  [code=2.40.270.10, no name defined]                                                                                                      ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............hhhhhhhhhhhh...........hhhhhhhhhhh.eee.......eeeee..........hhhhhhhh....eee....eee.......ee.......eee..............eee.eeeee...eeee.........eeee.........eeeeee...eeee.........hhhhhhhh.hhhhhhhhhhh...hhhhhh.hhhhhh.hhhhhhhhhhhh.........hhhhhhh..............hhhhhhh......................hhhhhhhhhhhhhh...............eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh...eee....hhhhhhhh..eee............hhhhhh.hhhhh................eee.....ee.....eeeeeee.........eeee..hhhhhh.ee...............eeee....eeee......eee..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhh............ee..hhhhhhhhh...ee....eeeeee....eeeee...eee.......ee.....ee..ee............eeee..............eeee...........eeeeehhhhhh...eeeeeeeeeeeee.............................................eee......hhhhhhhhhhhhh....eee...........eeeeeeee............eeeeeeeeeeeeee.....eee.....eeeeeeee...............ee...........hhhhhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhhh.ee..............eeeeee..ee.........eee......................eeehhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhh.........hhhhhhhhhhhhh...ee.................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_BETA ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 C    1 MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR 1119
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110         

Chain D from PDB  Type:PROTEIN  Length:1392
 aligned with RPOC_THET8 | Q8RQE8 from UniProtKB/Swiss-Prot  Length:1524

    Alignment length:1504
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501    
          RPOC_THET8      2 KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA 1505
               SCOP domains d2a69d_ D: RNA-polymerase beta-prime                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhheeee.........................................................hhhhhhheeeeeeeeeeehhhhhh...hhhhhhh....hhhhhhhhhh..eeeeeee............eehhhhhhhhhh...ee.......hhhhhhhhhhhh.......ee.......ee..........................hhhhhh..hhhhhh.hhhhh----------------------------------------------------------------------------------------------------------------.............................ee..eee..................................eeeee....eeeee....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeeeee.......eee.....eee.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..................hhhhhhh......hhhhheee...eeeeeeee.......eeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee.....hhh.eeeeeeeee....eee.hhhhh.........eeeee...hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh..............hhhhhhhhhhhhhh............hhhhhhhee.hhhhhhhhhhhh........eee....ee..hhhhhhhhhhhhhhh.hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee...ee........ee.hhhhhhhhhh.......ee....ee.........hhhhhhhhhhhh.....ee.hhhhh......hhhhhh.............hhhhhhhhhhhhhhhhh..................hhhhhhhhhh...............eeee......eeeeee....eeeeee.........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.....eee..........hhhhhhhhhhhhhh........ee.....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhh................eeehhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 D    2 KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLF----------------------------------------------------------------------------------------------------------------GDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA 1505
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         -         -         -         -         -         -         -         -         -         -         -  |    371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501    
                                                                                                                                                                                                                                                                                   251                                                                                                              364                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     

Chain E from PDB  Type:PROTEIN  Length:95
 aligned with RPOZ_THET8 | Q8RQE7 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:95
                                    11        21        31        41        51        61        71        81        91     
          RPOZ_THET8      2 AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPVE   96
               SCOP domains d2a69e_ E: RNA polymerase omega subunit                                                         SCOP domains
               CATH domains 2a69E00 E:2-96  [code=3.90.940.10, no name defined]                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................hhhhh..hhhhhhhhhhh....eee......hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                2a69 E    2 AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVFGENLVPEDRLQKEMERIYPGE   96
                                    11        21        31        41        51        61        71        81        91     

Chain F from PDB  Type:PROTEIN  Length:345
 aligned with Q5SKW1_THET8 | Q5SKW1 from UniProtKB/TrEMBL  Length:423

    Alignment length:350
                                    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423
        Q5SKW1_THET8     74 KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD  423
               SCOP domains d2a69f3 F:74-257 Sigma70                                                                                                                                                                d2a69f1 F:258-318 Sigma70                                    d2a69f2 F:319-423 Sigma70 (SigA, RpoD)                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2a69F02 F:260-313                                     -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhh..ee...........hhhhh.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...-----hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 F   74 KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDG-----EEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD  423
                                    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373    |    -|      393       403       413       423
                                                                                                                                                                                                                                                                                                                                          378   384                                       

Chain K from PDB  Type:PROTEIN  Length:229
 aligned with RPOA_THET8 | Q5SHR6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          RPOA_THET8      1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
               SCOP domains d2a69k1 K:1-49,K:173-229 RNA polymerase alpha    d2a69k2 K:50-172 RNA polymerase alpha subunit                                                                              d2a69k1 K:1-49,K:173-229 RNA polymerase alpha             SCOP domains
               CATH domains 2a69K01 K:1-49,K:172-225                         2a69K02 K:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                          2a69K01 K:1-49,K:172-225                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeeee.eehhhhhh.......ee..ee...eeeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 K    1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         

Chain K from PDB  Type:PROTEIN  Length:229
 aligned with RPOA_THETH | Q9Z9H6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          RPOA_THETH      1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
               SCOP domains d2a69k1 K:1-49,K:173-229 RNA polymerase alpha    d2a69k2 K:50-172 RNA polymerase alpha subunit                                                                              d2a69k1 K:1-49,K:173-229 RNA polymerase alpha             SCOP domains
               CATH domains 2a69K01 K:1-49,K:172-225                         2a69K02 K:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                          2a69K01 K:1-49,K:172-225                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeeee.eehhhhhh.......ee..ee...eeeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 K    1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         

Chain L from PDB  Type:PROTEIN  Length:229
 aligned with RPOA_THET8 | Q5SHR6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          RPOA_THET8      1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
               SCOP domains d2a69l1 L:1-49,L:173-229 RNA polymerase alpha    d2a69l2 L:50-172 RNA polymerase alpha subunit                                                                              d2a69l1 L:1-49,L:173-229 RNA polymerase alpha             SCOP domains
               CATH domains 2a69L01 L:1-49,L:172-225                         2a69L02 L:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                          2a69L01 L:1-49,L:172-225                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeeee.eehhhhhh.......ee..ee...eeeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 L    1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         

Chain L from PDB  Type:PROTEIN  Length:229
 aligned with RPOA_THETH | Q9Z9H6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          RPOA_THETH      1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
               SCOP domains d2a69l1 L:1-49,L:173-229 RNA polymerase alpha    d2a69l2 L:50-172 RNA polymerase alpha subunit                                                                              d2a69l1 L:1-49,L:173-229 RNA polymerase alpha             SCOP domains
               CATH domains 2a69L01 L:1-49,L:172-225                         2a69L02 L:50-171 RNA Polymerase Alpha Subunit; Chain A, domain 2                                                          2a69L01 L:1-49,L:172-225                              ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeeeeee...............hhhhhhhhhhh..eee......eeeeeeeee...eee.hhh.....eee.....eeee.....eeeeeeeeeeee.eehhhhhh.......ee..ee...eeeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 L    1 MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ  229
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         

Chain M from PDB  Type:PROTEIN  Length:1119
 aligned with RPOB_THET8 | Q8RQE9 from UniProtKB/Swiss-Prot  Length:1119

    Alignment length:1119
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110         
          RPOB_THET8      1 MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR 1119
               SCOP domains d2a69m_ M: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains -2a69M012a69M02 M:9-143,M:324-470,M:536-592  [code=3.90.1100.10, no name defined]                                                              2a69M03 M:144-323  [code=3.90.1110.10, no name defined]                                                                                                                             2a69M02 M:9-143,M:324-470,M:536-592  [code=3.90.1100.10, no name defined]                                                                          2a69M04 M:471-535  [code=2.30.150.10, no name defined]           2a69M02 M:9-143,M:324-470,M:536-592                      2a69M05 M:593-667  [code=2.40.50.100, no name defined]                     2a69M01                        2a69M06 M:699-831  [code=2.40.50.150, no name defined]                                                                               2a69M01 M:2-8,M:668-698,M:832-1004  [code=2.40.270.10, no name defined]                                                                                                      ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.............hhhhhhhhhhhh...........hhhhhhhhhhh.eee.......eeeee..........hhhhhhhh....eee....eee.......ee.......eee..............eee..eeee...eeee.........eeee.........eeeeee...eeee.........hhhhhhhh.hhhhhhhhhhh...hhhhhh.hhhhhh.hhhhhhhhhhhh.........hhhhhhh..............hhhhhhh......................hhhhhhhhhhhhhh...............eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh...eee....hhhhhhhh..eee............hhhhhh.hhhhh................eee.....ee.....eeeeeee.........eeeehhhhhhhh.ee...............eeee....eeee......eee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh............ee..hhhhhhhhh...ee....eeeeee....eeeee...eee.......ee.....ee..ee............eeee..............eeee...........eeeeehhhhhh...eeeeeeeeeeeeeee..ee...........hhhhh.......................ee.......hhhhhhhhhhhhh.....ee...........eeeeeeee............eeeeeeeeeeeeee.....eee.....eeeeeeee...............ee...........hhhhhhhhhhhhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhhh.ee..............eeeeee..ee.........eee......................eeehhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhh.........hhhhhhhhhhhhh...eeeee................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNA_POL_BETA ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 M    1 MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR 1119
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110         

Chain N from PDB  Type:PROTEIN  Length:1392
 aligned with RPOC_THET8 | Q8RQE8 from UniProtKB/Swiss-Prot  Length:1524

    Alignment length:1504
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501    
          RPOC_THET8      2 KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA 1505
               SCOP domains d2a69n_ N: RNA-polymerase beta-prime                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhheeee.........................................................hhhhhhheeeeeeeeeeehhhhhh...hhhhhhh....hhhhhhhhhh..eeeeeee............eehhhhhhhhhh...ee.......hhhhhhhhhhhh.......ee.......ee....................hhhhhhhhhhhh..hhhhhh.hhhhh----------------------------------------------------------------------------------------------------------------.............................ee..eee..................................eeeee....eeeee....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeeeee.......eee.....eee.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..................hhhhhhh...hhhhhh..eee...eeeeeeee.......eeeeehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee.....hhh.eeeeeeeee....eee.hhhhh.........eeeee...hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh..............hhhhhhhhhhhhhh............hhhhhhhee.hhhhhhhhhhhh........eee....ee..hhhhhhhhhhhhhhh.hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............eeee.ee........ee.hhhhhhhhhh.......ee....ee.........hhhhhhhhhhhh...eeee.hhhhh......hhhhhh.............hhhhhhhhhhhhhhhhh..................hhhhhhhhhh...............eeee......eeeeee....eeeeee.........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.....eee..........hhhhhhhhhhhhhh........ee.....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhh................eeehhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 N    2 KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLF----------------------------------------------------------------------------------------------------------------GDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA 1505
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         -         -         -         -         -         -         -         -         -         -         -  |    371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501    
                                                                                                                                                                                                                                                                                   251                                                                                                              364                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     

Chain O from PDB  Type:PROTEIN  Length:95
 aligned with RPOZ_THET8 | Q8RQE7 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:95
                                    11        21        31        41        51        61        71        81        91     
          RPOZ_THET8      2 AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPVE   96
               SCOP domains d2a69o_ O: RNA polymerase omega subunit                                                         SCOP domains
               CATH domains 2a69O00 O:2-96  [code=3.90.940.10, no name defined]                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh..hhhhhhhhhhhhhhhhhhh..................hhhhh..hhhhhhhhhhh....eee......hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                2a69 O    2 AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVFGENLVPEDRLQKEMERIYPGE   96
                                    11        21        31        41        51        61        71        81        91     

Chain P from PDB  Type:PROTEIN  Length:345
 aligned with Q5SKW1_THET8 | Q5SKW1 from UniProtKB/TrEMBL  Length:423

    Alignment length:350
                                    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423
        Q5SKW1_THET8     74 KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD  423
               SCOP domains d2a69p3 P:74-257 Sigma70                                                                                                                                                                d2a69p1 P:258-318 Sigma70                                    d2a69p2 P:319-423 Sigma70 (SigA, RpoD)                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2a69P02 P:260-313                                     -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhh.eee...........hhhhh.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...-----hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a69 P   74 KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDG-----EEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD  423
                                    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373    |    -|      393       403       413       423
                                                                                                                                                                                                                                                                                                                                          378   384                                       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (8, 20)

Asymmetric Unit

(-) CATH Domains  (10, 24)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A69)

(-) Gene Ontology  (15, 38)

Asymmetric Unit(hide GO term definitions)
Chain A,B,K,L   (RPOA_THET8 | Q5SHR6)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B,K,L   (RPOA_THETH | Q9Z9H6)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain C,M   (RPOB_THET8 | Q8RQE9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0032549    ribonucleoside binding    Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain D,N   (RPOC_THET8 | Q8RQE8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain E,O   (RPOZ_THET8 | Q8RQE7)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003899    DNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain F,P   (Q5SKW1_THET8 | Q5SKW1)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016987    sigma factor activity    A sigma factor is the promoter specificity subunit of eubacterial-type multisubunit RNA polymerases, those whose core subunit composition is often described as alpha(2)-beta-beta-prime. (This type of multisubunit RNA polymerase complex is known to be found in eubacteria and plant plastids). Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, this binds specifically to promoter sequences, with the sigma factor making sequence specific contacts with the promoter elements. The sigma subunit is released from the elongating form of the polymerase and is thus free to act catalytically for multiple RNA polymerase core enzymes.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006352    DNA-templated transcription, initiation    Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0001123    transcription initiation from bacterial-type RNA polymerase promoter    Any process involved in the assembly of bacterial-type RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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    BD8  [ RasMol ]  +environment [ RasMol ]
    BD9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    CD1  [ RasMol ]  +environment [ RasMol ]
    CD2  [ RasMol ]  +environment [ RasMol ]
    CD3  [ RasMol ]  +environment [ RasMol ]
    CD4  [ RasMol ]  +environment [ RasMol ]
    CD5  [ RasMol ]  +environment [ RasMol ]
    CD6  [ RasMol ]  +environment [ RasMol ]
    CD7  [ RasMol ]  +environment [ RasMol ]
    CD8  [ RasMol ]  +environment [ RasMol ]
    CD9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    DD1  [ RasMol ]  +environment [ RasMol ]
    DD2  [ RasMol ]  +environment [ RasMol ]
    DD3  [ RasMol ]  +environment [ RasMol ]
    DD4  [ RasMol ]  +environment [ RasMol ]
    DD5  [ RasMol ]  +environment [ RasMol ]
    DD6  [ RasMol ]  +environment [ RasMol ]
    DD7  [ RasMol ]  +environment [ RasMol ]
    DD8  [ RasMol ]  +environment [ RasMol ]
    DD9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    ED1  [ RasMol ]  +environment [ RasMol ]
    ED2  [ RasMol ]  +environment [ RasMol ]
    ED3  [ RasMol ]  +environment [ RasMol ]
    ED4  [ RasMol ]  +environment [ RasMol ]
    ED5  [ RasMol ]  +environment [ RasMol ]
    ED6  [ RasMol ]  +environment [ RasMol ]
    ED7  [ RasMol ]  +environment [ RasMol ]
    ED8  [ RasMol ]  +environment [ RasMol ]
    ED9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    FD1  [ RasMol ]  +environment [ RasMol ]
    FD2  [ RasMol ]  +environment [ RasMol ]
    FD3  [ RasMol ]  +environment [ RasMol ]
    FD4  [ RasMol ]  +environment [ RasMol ]
    FD5  [ RasMol ]  +environment [ RasMol ]
    FD6  [ RasMol ]  +environment [ RasMol ]
    FD7  [ RasMol ]  +environment [ RasMol ]
    FD8  [ RasMol ]  +environment [ RasMol ]
    FD9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
    GC4  [ RasMol ]  +environment [ RasMol ]
    GC5  [ RasMol ]  +environment [ RasMol ]
    GC6  [ RasMol ]  +environment [ RasMol ]
    GC7  [ RasMol ]  +environment [ RasMol ]
    GC8  [ RasMol ]  +environment [ RasMol ]
    GC9  [ RasMol ]  +environment [ RasMol ]
    GD1  [ RasMol ]  +environment [ RasMol ]
    GD2  [ RasMol ]  +environment [ RasMol ]
    GD3  [ RasMol ]  +environment [ RasMol ]
    GD4  [ RasMol ]  +environment [ RasMol ]
    GD5  [ RasMol ]  +environment [ RasMol ]
    GD6  [ RasMol ]  +environment [ RasMol ]
    GD7  [ RasMol ]  +environment [ RasMol ]
    GD8  [ RasMol ]  +environment [ RasMol ]
    GD9  [ RasMol ]  +environment [ RasMol ]
    HC1  [ RasMol ]  +environment [ RasMol ]
    HC2  [ RasMol ]  +environment [ RasMol ]
    HC3  [ RasMol ]  +environment [ RasMol ]
    HC4  [ RasMol ]  +environment [ RasMol ]
    HC5  [ RasMol ]  +environment [ RasMol ]
    HC6  [ RasMol ]  +environment [ RasMol ]
    HC7  [ RasMol ]  +environment [ RasMol ]
    HC8  [ RasMol ]  +environment [ RasMol ]
    HC9  [ RasMol ]  +environment [ RasMol ]
    HD1  [ RasMol ]  +environment [ RasMol ]
    HD2  [ RasMol ]  +environment [ RasMol ]
    HD3  [ RasMol ]  +environment [ RasMol ]
    HD4  [ RasMol ]  +environment [ RasMol ]
    HD5  [ RasMol ]  +environment [ RasMol ]
    HD6  [ RasMol ]  +environment [ RasMol ]
    HD7  [ RasMol ]  +environment [ RasMol ]
    HD8  [ RasMol ]  +environment [ RasMol ]
    HD9  [ RasMol ]  +environment [ RasMol ]
    IC1  [ RasMol ]  +environment [ RasMol ]
    IC2  [ RasMol ]  +environment [ RasMol ]
    IC3  [ RasMol ]  +environment [ RasMol ]
    IC4  [ RasMol ]  +environment [ RasMol ]
    IC5  [ RasMol ]  +environment [ RasMol ]
    IC6  [ RasMol ]  +environment [ RasMol ]
    IC7  [ RasMol ]  +environment [ RasMol ]
    IC8  [ RasMol ]  +environment [ RasMol ]
    IC9  [ RasMol ]  +environment [ RasMol ]
    ID1  [ RasMol ]  +environment [ RasMol ]
    ID2  [ RasMol ]  +environment [ RasMol ]
    ID3  [ RasMol ]  +environment [ RasMol ]
    ID4  [ RasMol ]  +environment [ RasMol ]
    ID5  [ RasMol ]  +environment [ RasMol ]
    ID6  [ RasMol ]  +environment [ RasMol ]
    ID7  [ RasMol ]  +environment [ RasMol ]
    ID8  [ RasMol ]  +environment [ RasMol ]
    ID9  [ RasMol ]  +environment [ RasMol ]
    JC1  [ RasMol ]  +environment [ RasMol ]
    JC2  [ RasMol ]  +environment [ RasMol ]
    JC3  [ RasMol ]  +environment [ RasMol ]
    JC4  [ RasMol ]  +environment [ RasMol ]
    JC5  [ RasMol ]  +environment [ RasMol ]
    JC6  [ RasMol ]  +environment [ RasMol ]
    JC7  [ RasMol ]  +environment [ RasMol ]
    JC8  [ RasMol ]  +environment [ RasMol ]
    JC9  [ RasMol ]  +environment [ RasMol ]
    JD1  [ RasMol ]  +environment [ RasMol ]
    JD2  [ RasMol ]  +environment [ RasMol ]
    JD3  [ RasMol ]  +environment [ RasMol ]
    JD4  [ RasMol ]  +environment [ RasMol ]
    JD5  [ RasMol ]  +environment [ RasMol ]
    JD6  [ RasMol ]  +environment [ RasMol ]
    JD7  [ RasMol ]  +environment [ RasMol ]
    JD8  [ RasMol ]  +environment [ RasMol ]
    JD9  [ RasMol ]  +environment [ RasMol ]
    KC1  [ RasMol ]  +environment [ RasMol ]
    KC2  [ RasMol ]  +environment [ RasMol ]
    KC3  [ RasMol ]  +environment [ RasMol ]
    KC4  [ RasMol ]  +environment [ RasMol ]
    KC5  [ RasMol ]  +environment [ RasMol ]
    KC6  [ RasMol ]  +environment [ RasMol ]
    KC7  [ RasMol ]  +environment [ RasMol ]
    KC8  [ RasMol ]  +environment [ RasMol ]
    KC9  [ RasMol ]  +environment [ RasMol ]
    KD1  [ RasMol ]  +environment [ RasMol ]
    KD2  [ RasMol ]  +environment [ RasMol ]
    KD3  [ RasMol ]  +environment [ RasMol ]
    KD4  [ RasMol ]  +environment [ RasMol ]
    KD5  [ RasMol ]  +environment [ RasMol ]
    KD6  [ RasMol ]  +environment [ RasMol ]
    KD7  [ RasMol ]  +environment [ RasMol ]
    KD8  [ RasMol ]  +environment [ RasMol ]
    KD9  [ RasMol ]  +environment [ RasMol ]
    LC1  [ RasMol ]  +environment [ RasMol ]
    LC2  [ RasMol ]  +environment [ RasMol ]
    LC3  [ RasMol ]  +environment [ RasMol ]
    LC4  [ RasMol ]  +environment [ RasMol ]
    LC5  [ RasMol ]  +environment [ RasMol ]
    LC6  [ RasMol ]  +environment [ RasMol ]
    LC7  [ RasMol ]  +environment [ RasMol ]
    LC8  [ RasMol ]  +environment [ RasMol ]
    LC9  [ RasMol ]  +environment [ RasMol ]
    LD1  [ RasMol ]  +environment [ RasMol ]
    LD2  [ RasMol ]  +environment [ RasMol ]
    LD3  [ RasMol ]  +environment [ RasMol ]
    LD4  [ RasMol ]  +environment [ RasMol ]
    LD5  [ RasMol ]  +environment [ RasMol ]
    LD6  [ RasMol ]  +environment [ RasMol ]
    LD7  [ RasMol ]  +environment [ RasMol ]
    LD8  [ RasMol ]  +environment [ RasMol ]
    LD9  [ RasMol ]  +environment [ RasMol ]
    MC1  [ RasMol ]  +environment [ RasMol ]
    MC2  [ RasMol ]  +environment [ RasMol ]
    MC3  [ RasMol ]  +environment [ RasMol ]
    MC4  [ RasMol ]  +environment [ RasMol ]
    MC5  [ RasMol ]  +environment [ RasMol ]
    MC6  [ RasMol ]  +environment [ RasMol ]
    MC7  [ RasMol ]  +environment [ RasMol ]
    MC8  [ RasMol ]  +environment [ RasMol ]
    MC9  [ RasMol ]  +environment [ RasMol ]
    MD1  [ RasMol ]  +environment [ RasMol ]
    MD2  [ RasMol ]  +environment [ RasMol ]
    MD3  [ RasMol ]  +environment [ RasMol ]
    MD4  [ RasMol ]  +environment [ RasMol ]
    MD5  [ RasMol ]  +environment [ RasMol ]
    MD6  [ RasMol ]  +environment [ RasMol ]
    MD7  [ RasMol ]  +environment [ RasMol ]
    MD8  [ RasMol ]  +environment [ RasMol ]
    MD9  [ RasMol ]  +environment [ RasMol ]
    NC1  [ RasMol ]  +environment [ RasMol ]
    NC2  [ RasMol ]  +environment [ RasMol ]
    NC3  [ RasMol ]  +environment [ RasMol ]
    NC4  [ RasMol ]  +environment [ RasMol ]
    NC5  [ RasMol ]  +environment [ RasMol ]
    NC6  [ RasMol ]  +environment [ RasMol ]
    NC7  [ RasMol ]  +environment [ RasMol ]
    NC8  [ RasMol ]  +environment [ RasMol ]
    NC9  [ RasMol ]  +environment [ RasMol ]
    ND1  [ RasMol ]  +environment [ RasMol ]
    ND2  [ RasMol ]  +environment [ RasMol ]
    ND3  [ RasMol ]  +environment [ RasMol ]
    ND4  [ RasMol ]  +environment [ RasMol ]
    ND5  [ RasMol ]  +environment [ RasMol ]
    ND6  [ RasMol ]  +environment [ RasMol ]
    ND7  [ RasMol ]  +environment [ RasMol ]
    ND8  [ RasMol ]  +environment [ RasMol ]
    ND9  [ RasMol ]  +environment [ RasMol ]
    OC1  [ RasMol ]  +environment [ RasMol ]
    OC2  [ RasMol ]  +environment [ RasMol ]
    OC3  [ RasMol ]  +environment [ RasMol ]
    OC4  [ RasMol ]  +environment [ RasMol ]
    OC5  [ RasMol ]  +environment [ RasMol ]
    OC6  [ RasMol ]  +environment [ RasMol ]
    OC7  [ RasMol ]  +environment [ RasMol ]
    OC8  [ RasMol ]  +environment [ RasMol ]
    OC9  [ RasMol ]  +environment [ RasMol ]
    OD1  [ RasMol ]  +environment [ RasMol ]
    OD2  [ RasMol ]  +environment [ RasMol ]
    OD3  [ RasMol ]  +environment [ RasMol ]
    OD4  [ RasMol ]  +environment [ RasMol ]
    OD5  [ RasMol ]  +environment [ RasMol ]
    OD6  [ RasMol ]  +environment [ RasMol ]
    OD7  [ RasMol ]  +environment [ RasMol ]
    OD8  [ RasMol ]  +environment [ RasMol ]
    OD9  [ RasMol ]  +environment [ RasMol ]
    PC1  [ RasMol ]  +environment [ RasMol ]
    PC2  [ RasMol ]  +environment [ RasMol ]
    PC3  [ RasMol ]  +environment [ RasMol ]
    PC4  [ RasMol ]  +environment [ RasMol ]
    PC5  [ RasMol ]  +environment [ RasMol ]
    PC6  [ RasMol ]  +environment [ RasMol ]
    PC7  [ RasMol ]  +environment [ RasMol ]
    PC8  [ RasMol ]  +environment [ RasMol ]
    PC9  [ RasMol ]  +environment [ RasMol ]
    PD1  [ RasMol ]  +environment [ RasMol ]
    PD2  [ RasMol ]  +environment [ RasMol ]
    PD3  [ RasMol ]  +environment [ RasMol ]
    PD4  [ RasMol ]  +environment [ RasMol ]
    PD5  [ RasMol ]  +environment [ RasMol ]
    PD6  [ RasMol ]  +environment [ RasMol ]
    PD7  [ RasMol ]  +environment [ RasMol ]
    PD8  [ RasMol ]  +environment [ RasMol ]
    PD9  [ RasMol ]  +environment [ RasMol ]
    QC1  [ RasMol ]  +environment [ RasMol ]
    QC2  [ RasMol ]  +environment [ RasMol ]
    QC3  [ RasMol ]  +environment [ RasMol ]
    QC4  [ RasMol ]  +environment [ RasMol ]
    QC5  [ RasMol ]  +environment [ RasMol ]
    QC6  [ RasMol ]  +environment [ RasMol ]
    QC7  [ RasMol ]  +environment [ RasMol ]
    QC8  [ RasMol ]  +environment [ RasMol ]
    QC9  [ RasMol ]  +environment [ RasMol ]
    QD1  [ RasMol ]  +environment [ RasMol ]
    QD2  [ RasMol ]  +environment [ RasMol ]
    QD3  [ RasMol ]  +environment [ RasMol ]
    QD4  [ RasMol ]  +environment [ RasMol ]
    QD5  [ RasMol ]  +environment [ RasMol ]
    QD6  [ RasMol ]  +environment [ RasMol ]
    QD7  [ RasMol ]  +environment [ RasMol ]
    QD8  [ RasMol ]  +environment [ RasMol ]
    QD9  [ RasMol ]  +environment [ RasMol ]
    RC1  [ RasMol ]  +environment [ RasMol ]
    RC2  [ RasMol ]  +environment [ RasMol ]
    RC3  [ RasMol ]  +environment [ RasMol ]
    RC4  [ RasMol ]  +environment [ RasMol ]
    RC5  [ RasMol ]  +environment [ RasMol ]
    RC6  [ RasMol ]  +environment [ RasMol ]
    RC7  [ RasMol ]  +environment [ RasMol ]
    RC8  [ RasMol ]  +environment [ RasMol ]
    RC9  [ RasMol ]  +environment [ RasMol ]
    RD1  [ RasMol ]  +environment [ RasMol ]
    RD2  [ RasMol ]  +environment [ RasMol ]
    RD3  [ RasMol ]  +environment [ RasMol ]
    RD4  [ RasMol ]  +environment [ RasMol ]
    RD5  [ RasMol ]  +environment [ RasMol ]
    RD6  [ RasMol ]  +environment [ RasMol ]
    RD7  [ RasMol ]  +environment [ RasMol ]
    RD8  [ RasMol ]  +environment [ RasMol ]
    RD9  [ RasMol ]  +environment [ RasMol ]
    SC1  [ RasMol ]  +environment [ RasMol ]
    SC2  [ RasMol ]  +environment [ RasMol ]
    SC3  [ RasMol ]  +environment [ RasMol ]
    SC4  [ RasMol ]  +environment [ RasMol ]
    SC5  [ RasMol ]  +environment [ RasMol ]
    SC6  [ RasMol ]  +environment [ RasMol ]
    SC7  [ RasMol ]  +environment [ RasMol ]
    SC8  [ RasMol ]  +environment [ RasMol ]
    SC9  [ RasMol ]  +environment [ RasMol ]
    SD1  [ RasMol ]  +environment [ RasMol ]
    SD2  [ RasMol ]  +environment [ RasMol ]
    TC1  [ RasMol ]  +environment [ RasMol ]
    TC2  [ RasMol ]  +environment [ RasMol ]
    TC3  [ RasMol ]  +environment [ RasMol ]
    TC4  [ RasMol ]  +environment [ RasMol ]
    TC5  [ RasMol ]  +environment [ RasMol ]
    TC6  [ RasMol ]  +environment [ RasMol ]
    TC7  [ RasMol ]  +environment [ RasMol ]
    TC8  [ RasMol ]  +environment [ RasMol ]
    TC9  [ RasMol ]  +environment [ RasMol ]
    UC1  [ RasMol ]  +environment [ RasMol ]
    UC2  [ RasMol ]  +environment [ RasMol ]
    UC3  [ RasMol ]  +environment [ RasMol ]
    UC4  [ RasMol ]  +environment [ RasMol ]
    UC5  [ RasMol ]  +environment [ RasMol ]
    UC6  [ RasMol ]  +environment [ RasMol ]
    UC7  [ RasMol ]  +environment [ RasMol ]
    UC8  [ RasMol ]  +environment [ RasMol ]
    UC9  [ RasMol ]  +environment [ RasMol ]
    VC1  [ RasMol ]  +environment [ RasMol ]
    VC2  [ RasMol ]  +environment [ RasMol ]
    VC3  [ RasMol ]  +environment [ RasMol ]
    VC4  [ RasMol ]  +environment [ RasMol ]
    VC5  [ RasMol ]  +environment [ RasMol ]
    VC6  [ RasMol ]  +environment [ RasMol ]
    VC7  [ RasMol ]  +environment [ RasMol ]
    VC8  [ RasMol ]  +environment [ RasMol ]
    VC9  [ RasMol ]  +environment [ RasMol ]
    WC1  [ RasMol ]  +environment [ RasMol ]
    WC2  [ RasMol ]  +environment [ RasMol ]
    WC3  [ RasMol ]  +environment [ RasMol ]
    WC4  [ RasMol ]  +environment [ RasMol ]
    WC5  [ RasMol ]  +environment [ RasMol ]
    WC6  [ RasMol ]  +environment [ RasMol ]
    WC7  [ RasMol ]  +environment [ RasMol ]
    WC8  [ RasMol ]  +environment [ RasMol ]
    WC9  [ RasMol ]  +environment [ RasMol ]
    XC1  [ RasMol ]  +environment [ RasMol ]
    XC2  [ RasMol ]  +environment [ RasMol ]
    XC3  [ RasMol ]  +environment [ RasMol ]
    XC4  [ RasMol ]  +environment [ RasMol ]
    XC5  [ RasMol ]  +environment [ RasMol ]
    XC6  [ RasMol ]  +environment [ RasMol ]
    XC7  [ RasMol ]  +environment [ RasMol ]
    XC8  [ RasMol ]  +environment [ RasMol ]
    XC9  [ RasMol ]  +environment [ RasMol ]
    YC1  [ RasMol ]  +environment [ RasMol ]
    YC2  [ RasMol ]  +environment [ RasMol ]
    YC3  [ RasMol ]  +environment [ RasMol ]
    YC4  [ RasMol ]  +environment [ RasMol ]
    YC5  [ RasMol ]  +environment [ RasMol ]
    YC6  [ RasMol ]  +environment [ RasMol ]
    YC7  [ RasMol ]  +environment [ RasMol ]
    YC8  [ RasMol ]  +environment [ RasMol ]
    YC9  [ RasMol ]  +environment [ RasMol ]
    ZC1  [ RasMol ]  +environment [ RasMol ]
    ZC2  [ RasMol ]  +environment [ RasMol ]
    ZC3  [ RasMol ]  +environment [ RasMol ]
    ZC4  [ RasMol ]  +environment [ RasMol ]
    ZC5  [ RasMol ]  +environment [ RasMol ]
    ZC6  [ RasMol ]  +environment [ RasMol ]
    ZC7  [ RasMol ]  +environment [ RasMol ]
    ZC8  [ RasMol ]  +environment [ RasMol ]
    ZC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:26 - Pro A:27   [ RasMol ]  
    Glu B:26 - Pro B:27   [ RasMol ]  
    Glu K:26 - Pro K:27   [ RasMol ]  
    Glu L:26 - Pro L:27   [ RasMol ]  
    Leu C:165 - Pro C:166   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q5SKW1_THET8 | Q5SKW15vo8 5voi
        RPOA_THET8 | Q5SHR61zyr 2a68 2a6e 2a6h 2be5 2cw0 2o5i 2o5j 3aoh 3aoi 3dxj 3wod 4g7h 4g7o 4g7z 4gzy 4gzz 4mq9 4oin 4oio 4oip 4oiq 4oir 4wqs 4wqt 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf 5vo8
        RPOA_THETH | Q9Z9H61doq 1iw7 1smy 2a68 2be5 2ppb 3eql 4q4z 4q5s 5d4c 5d4d 5d4e 5e17 5e18 5tmc 5tmf 5x21 5x22
        RPOB_THET8 | Q8RQE91iw7 1smy 1zyr 2a68 2a6e 2a6h 2be5 2cw0 2o5i 2o5j 2ppb 3aoh 3aoi 3dxj 3eql 3wod 3woe 3wof 4g7h 4g7o 4g7z 4gzy 4gzz 4mq9 4oin 4oio 4oip 4oiq 4oir 4q4z 4q5s 4wqs 4wqt 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf 5vo8 5voi 5x21 5x22
        RPOC_THET8 | Q8RQE81iw7 1smy 1zyr 2a68 2a6e 2a6h 2be5 2cw0 2o5i 2o5j 2ppb 3aoh 3aoi 3dxj 3eql 3wod 4g7h 4g7o 4g7z 4gzy 4gzz 4mq9 4oin 4oio 4oip 4oiq 4oir 4q4z 4q5s 4wqs 4wqt 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf 5vo8 5voi 5x21 5x22
        RPOZ_THET8 | Q8RQE71iw7 1smy 1zyr 2a68 2a6e 2a6h 2be5 2cw0 2o5i 2o5j 2ppb 3aoh 3aoi 3dxj 3eql 3wod 4g7h 4g7o 4g7z 4gzy 4gzz 4mq9 4oin 4oio 4oip 4oiq 4oir 4q4z 4q5s 4wqs 4wqt 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf 5vo8 5voi
UniProtKB/TrEMBL
        Q5SKW1_THET8 | Q5SKW11iw7 1smy 1zyr 2a68 2a6e 2a6h 2be5 2cw0 3dxj 3eql 3wod 4g7h 4g7o 4g7z 4mq9 4oin 4oio 4oip 4oiq 4oir 4q4z 4q5s 5d4c 5d4d 5d4e 5e17 5e18 5i2d 5tmc 5tmf

(-) Related Entries Specified in the PDB File

1a6e
1a6h RELATED ID: TTK003000780.3 RELATED DB: TARGETDB
1iw7 T. THERMOPHILUS RNA POLYMERASE APO-HOLOENZYME
1smy T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ALARMONE PPGPP
2a68 T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFABUTIN