CATH 3.4.0 - JenaLib Tree Browser

Architecture: Beta Complex (381)

Topology: RNA Polymerase Alpha Subunit; Chain A, domain 2 (118)

Homologous Superfamily: Ribosomal protein L25-like. Domain 2 (47)

[unclassified] (1)

1FEU

A:92-185; D:92-185

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA.

Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299.Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid:1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid:1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. Deinococcus radiodurans. Organism_taxid: 1299. (4)

2ZJP	S:87-175	THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
2ZJR	S:87-175	REFINED NATIVE STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS
3CF5	S:87-175	THIOPEPTIDE ANTIBIOTIC THIOSTREPTON BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
3DLL	S:87-175	THE OXAZOLIDINONE ANTIBIOTICS PERTURB THE RIBOSOMAL PEPTIDYL-TRANSFERASE CENTER AND EFFECT TRNA POSITIONING

2ZJQ

S:87-175

INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT

Homologous Superfamily: RNA Polymerase Alpha Subunit; Chain A, domain 2 (71)

[unclassified] (17)

1R9T	C:43-168	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE
1SFO	C:43-168	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX
1Y1W	C:43-168	COMPLETE RNA POLYMERASE II ELONGATION COMPLEX
2B63	C:43-168	COMPLETE RNA POLYMERASE II-RNA INHIBITOR COMPLEX
2E2H	C:43-168	RNA POLYMERASE II ELONGATION COMPLEX AT 5 MM MG2+ WITH GTP
2E2I	C:43-168	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DGTP
2E2J	C:43-168	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH GMPCPP
2NVQ	C:43-168	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH 2'DUTP
2NVT	C:43-168	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH GMPCPP
2NVX	C:43-168	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DUTP
2O5I	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE ELONGATION COMPLEX
2O5J	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG
2PPB	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG AND ANTIBIOTIC STREPTOLYDIGIN
2R7Z	C:43-168	CISPLATIN LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
2R92	C:43-168	ELONGATION COMPLEX OF RNA POLYMERASE II WITH ARTIFICIAL RDRP SCAFFOLD
2R93	C:43-168	ELONGATION COMPLEX OF RNA POLYMERASE II WITH A HEPATITIS DELTA VIRUS-DERIVED RNA STEM LOOP
2YU9	C:43-168	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH UTP

Baker's yeast (Saccharomyces cerevisiae) (19)

1I3Q	C:43-168	RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
1I50	C:43-168	RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION
1I6H	C:43-168	RNA POLYMERASE II ELONGATION COMPLEX
1K83	C:43-168	CRYSTAL STRUCTURE OF YEAST RNA POLYMERASE II COMPLEXED WITH THE INHIBITOR ALPHA AMANITIN
1TWA	C:43-168	RNA POLYMERASE II COMPLEXED WITH ATP
1TWC	C:43-168	RNA POLYMERASE II COMPLEXED WITH GTP
1TWF	C:43-168	RNA POLYMERASE II COMPLEXED WITH UTP AT 2.3 A RESOLUTION
1TWG	C:43-168	RNA POLYMERASE II COMPLEXED WITH CTP
1TWH	C:43-168	RNA POLYMERASE II COMPLEXED WITH 2'DATP
1Y1V	C:43-168	REFINED RNA POLYMERASE II-TFIIS COMPLEX
2NVY	C:43-168	RNA POLYMERASE II FORM II IN 150 MM MN+2
3HOU	C:43-168; O:43-168	COMPLETE RNA POLYMERASE II ELONGATION COMPLEX I WITH A T-U MISMATCH
3HOV	C:43-168	COMPLETE RNA POLYMERASE II ELONGATION COMPLEX II
3HOW	C:43-168	COMPLETE RNA POLYMERASE II ELONGATION COMPLEX III WITH A T-U MISMATCH AND A FRAYED RNA 3'-URIDINE
3HOX	C:43-168	COMPLETE RNA POLYMERASE II ELONGATION COMPLEX V
3HOY	C:43-168	COMPLETE RNA POLYMERASE II ELONGATION COMPLEX VI
3HOZ	C:43-168	COMPLETE RNA POLYMERASE II ELONGATION COMPLEX IV WITH A T-U MISMATCH AND A FRAYED RNA 3'-GUANINE
3I4M	C:43-168	8-OXOGUANINE CONTAINING RNA POLYMERASE II ELONGATION COMPLEX D
3I4N	C:43-168	8-OXOGUANINE CONTAINING RNA POLYMERASE II ELONGATION COMPLEX E

Bakers' yeast (Saccharomyces cerevisiae) (5)

2JA5	C:43-168	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX A
2JA6	C:43-168	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX B
2JA7	C:43-168; O:43-168	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX C
2JA8	C:43-168	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX D
2VUM	C:43-168	ALPHA-AMANITIN INHIBITED COMPLETE RNA POLYMERASE II ELONGATION COMPLEX

Brewer's yeast,lager beer yeast,yeast (Saccharomyces cerevisiae) (1)

3CQZ

C:43-168

CRYSTAL STRUCTURE OF 10 SUBUNIT RNA POLYMERASE II IN COMPLEX WITH THE INHIBITOR ALPHA-AMANITIN

Escherichia coli. Organism_taxid: 562. Cell_line: bl-21. (1)

1BDF

B:53-177; D:53-177; A:53-177; C:53-177

STRUCTURE OF ESCHERICHIA COLI RNA POLYMERASE ALPHA SUBUNIT N-TERMINAL DOMAIN

Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomycespombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. Schizosaccharomyces pombe. Organism_taxid: 284812. Strain: 972h-. (1)

3H0G

C:42-169; O:42-169

RNA POLYMERASE II FROM SCHIZOSACCHAROMYCES POMBE

Thermus aquaticus. Organism_taxid: 271. Thermus aquaticus. Organism_taxid: 271. Thermus aquaticus. Organism_taxid: 271. (4)

1HQM	A:50-170; B:50-170	CRYSTAL STRUCTURE OF THERMUS AQUATICUS CORE RNA POLYMERASE-INCLUDES COMPLETE STRUCTURE WITH SIDE-CHAINS (EXCEPT FOR DISORDERED REGIONS)-FURTHER REFINED FROM ORIGINAL DEPOSITION-CONTAINS ADDITIONAL SEQUENCE INFORMATION
1I6V	A:50-171; B:50-171	THERMUS AQUATICUS CORE RNA POLYMERASE-RIFAMPICIN COMPLEX
1YNJ	A:50-171; B:50-171	TAQ RNA POLYMERASE-SORANGICIN COMPLEX
1YNN	A:50-171; B:50-171	TAQ RNA POLYMERASE-RIFAMPICIN COMPLEX

Thermus thermophilus hb8. Organism_taxid: 300852. Thermus thermophilushb8. Organism_taxid: 300852. Thermus thermophilus hb8. Organism_taxid: 300852. Thermus thermophilus hb8. Organism_taxid: 300852. (1)

3DXJ

A:50-171; B:50-171; K:50-171; L:50-171

CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH THE ANTIBIOTIC MYXOPYRONIN

Thermus thermophilus. Organism_taxid: 274. Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8. Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8. Thermus thermophilus. Organism_taxid: 274. (1)

2CW0

A:50-171; B:50-171; K:50-171; L:50-171

CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME AT 3.3 ANGSTROMS RESOLUTION

Thermus thermophilus. Organism_taxid: 274. Thermus thermophilus. Organism_taxid: 274. Thermus thermophilus. Organism_taxid: 274. Thermus thermophilus. Organism_taxid: 274. (9)

1IW7	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE RNA POLYMERASE HOLOENZYME FROM THERMUS THERMOPHILUS AT 2.6A RESOLUTION
1SMY	A:50-171; B:50-171; K:50-171; L:50-171	STRUCTURAL BASIS FOR TRANSCRIPTION REGULATION BY ALARMONE PPGPP
1ZYR	A:50-171; B:50-171; K:50-171; L:50-171	STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH THE ANTIBIOTIC STREPTOLYDIGIN
2A68	A:50-171; K:50-171; L:50-171; B:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFABUTIN
2A69	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFAPENTIN
2A6E	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME
2A6H	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC STERPTOLYDIGIN
2BE5	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH INHIBITOR TAGETITOXIN
3EQL	A:50-171; B:50-171; K:50-171; L:50-171	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC MYXOPYRONIN

Yeast (Saccharomyces cerevisiae) (12)

1WCM	C:43-168	COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 ANG
3FKI	C:43-168	12-SUBUNIT RNA POLYMERASE II REFINED WITH ZN-SAD DATA
3GTG	C:43-168	BACKTRACKED RNA POLYMERASE II COMPLEX WITH 12MER RNA
3GTJ	C:43-168	BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER RNA
3GTK	C:43-168	BACKTRACKED RNA POLYMERASE II COMPLEX WITH 18MER RNA
3GTL	C:43-168	BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER WITH G<>U MISMATCH
3GTM	C:43-168	CO-COMPLEX OF BACKTRACKED RNA POLYMERASE II WITH TFIIS
3GTO	C:43-168	BACKTRACKED RNA POLYMERASE II COMPLEX WITH 15MER RNA
3GTP	C:43-168	BACKTRACKED RNA POLYMERASE II COMPLEX WITH 24MER RNA
3GTQ	C:43-168	BACKTRACKED RNA POLYMERASE II COMPLEX INDUCED BY DAMAGE
3H3V	D:43-168	YEAST RNAP II CONTAINING POLY(A)-SIGNAL SEQUENCE IN THE ACTIVE SITE
3K7A	C:43-168	CRYSTAL STRUCTURE OF AN RNA POLYMERASE II-TFIIB COMPLEX