1A6E - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THERMOSOME-MG-ADP-ALF3 COMPLEX

Authors :   L. Ditzel, J. Loewe, D. Stock, K. -O. Stetter, H. Huber, R. Huber, S. Stei

Date :   24 Feb 98 (Deposition) - 23 Mar 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (8x)
Biol. Unit 2: A,B  (4x)

Keywords :   Thermoplasma Acidophilum, Group Ii Chaperonin, Cct, Tric, Protein Folding, Atpase, Transition State Complex, Atp Hydrolysis, Chaperonin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Ditzel, J. Lowe, D. Stock, K. O. Stetter, H. Huber, R. Huber, S. Steinbacher
Crystal Structure Of The Thermosome, The Archaeal Chaperoni And Homolog Of Cct.
Cell(Cambridge, Mass. ) V. 93 125 1998
PubMed-ID: 9546398 | Reference-DOI: 10.1016/S0092-8674(00)81152-6

Molecule 1 - THERMOSOME (ALPHA SUBUNIT)
	Cellular Location	:	CYTOPLASM
	Chains	:	A
	Collection	:	ATCC 25905
	Organism Scientific	:	THERMOPLASMA ACIDOPHILUM
	Organism Taxid	:	2303

Molecule 2 - THERMOSOME (BETA SUBUNIT)
	Atcc	:	ATCC 25905
	Cellular Location	:	CYTOPLASM
	Chains	:	B
	Collection	:	ATCC 25905
	Organism Scientific	:	THERMOPLASMA ACIDOPHILUM
	Organism Taxid	:	2303

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (8x)	:	A	B
Biological Unit 2 (4x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AF3	2	Ligand/Ion	ALUMINUM FLUORIDE
3	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 32)

No.	Name	Count	Type	Full Name
1	ADP	16	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AF3	16	Ligand/Ion	ALUMINUM FLUORIDE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 16)

No.	Name	Count	Type	Full Name
1	ADP	8	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AF3	8	Ligand/Ion	ALUMINUM FLUORIDE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:93 , ADP B:998 , AF3 B:999	BINDING SITE FOR RESIDUE MG B 997
2	AC2	SOFTWARE	ASP A:94 , ADP A:898 , AF3 A:899	BINDING SITE FOR RESIDUE MG A 897
3	AC3	SOFTWARE	SER B:40 , LEU B:41 , GLY B:42 , PRO B:43 , ASP B:93 , GLY B:94 , THR B:96 , THR B:97 , THR B:158 , SER B:162 , GLY B:408 , GLY B:409 , LEU B:449 , ILE B:477 , PHE B:480 , MET B:487 , VAL B:492 , GLU B:494 , MG B:997 , AF3 B:999	BINDING SITE FOR RESIDUE ADP B 998
4	AC4	SOFTWARE	ASN B:61 , GLY B:63 , ASP B:93 , THR B:95 , THR B:96 , LYS B:163 , ASP B:391 , HOH B:951 , MG B:997 , ADP B:998	BINDING SITE FOR RESIDUE AF3 B 999
5	AC5	SOFTWARE	THR A:41 , LEU A:42 , GLY A:43 , PRO A:44 , ASP A:94 , GLY A:95 , THR A:96 , THR A:97 , THR A:98 , THR A:157 , SER A:160 , GLY A:407 , GLY A:408 , LEU A:448 , LEU A:478 , VAL A:491 , ASP A:493 , MG A:897 , AF3 A:899	BINDING SITE FOR RESIDUE ADP A 898
6	AC6	SOFTWARE	ASN A:62 , ASP A:63 , GLY A:64 , ASP A:94 , THR A:96 , THR A:97 , ASP A:390 , MG A:897 , ADP A:898 , HOH A:950	BINDING SITE FOR RESIDUE AF3 A 899
7	ASB	UNKNOWN	GLY B:42 , PRO B:43 , ARG B:44 , GLY B:63 , GLY B:94 , THR B:96 , THR B:97 , ALA B:98 , GLN B:157 , THR B:390 , ILE B:493	RESIDUE NUMBERING ACCORDING TO ALPHA-TYPE SUBUNIT.
8	ASE	UNKNOWN	LEU A:42 , GLY A:43 , PRO A:44 , ASP A:63 , ASP A:94 , THR A:96 , THR A:97 , THR A:98 , THR A:157 , ASP A:390 , ASP A:493	RESIDUE NUMBERING ACCORDING TO ALPHA-TYPE SUBUNIT.

(no "SS Bond" information available for 1A6E)

(no "Cis Peptide Bond" information available for 1A6E)

(no "SAP(SNP)/Variant" information available for 1A6E)

Asymmetric Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TCP1_1	PS00750	Chaperonins TCP-1 signature 1.	THSB_THEAC	38-50	1	B:38-50
1	TCP1_1	PS00750	Chaperonins TCP-1 signature 1.	THSA_THEAC	39-51	1	A:39-51
2	TCP1_2	PS00751	Chaperonins TCP-1 signature 2.	THSB_THEAC	59-75	1	B:59-75
2	TCP1_2	PS00751	Chaperonins TCP-1 signature 2.	THSA_THEAC	60-76	1	A:60-76
3	TCP1_3	PS00995	Chaperonins TCP-1 signature 3.	THSB_THEAC	87-95	1	B:87-95
3	TCP1_3	PS00995	Chaperonins TCP-1 signature 3.	THSA_THEAC	88-96	1	A:88-96

Biological Unit 1 (3, 48)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TCP1_1	PS00750	Chaperonins TCP-1 signature 1.	THSB_THEAC	38-50	8	B:38-50
1	TCP1_1	PS00750	Chaperonins TCP-1 signature 1.	THSA_THEAC	39-51	8	A:39-51
2	TCP1_2	PS00751	Chaperonins TCP-1 signature 2.	THSB_THEAC	59-75	8	B:59-75
2	TCP1_2	PS00751	Chaperonins TCP-1 signature 2.	THSA_THEAC	60-76	8	A:60-76
3	TCP1_3	PS00995	Chaperonins TCP-1 signature 3.	THSB_THEAC	87-95	8	B:87-95
3	TCP1_3	PS00995	Chaperonins TCP-1 signature 3.	THSA_THEAC	88-96	8	A:88-96

Biological Unit 2 (3, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TCP1_1	PS00750	Chaperonins TCP-1 signature 1.	THSB_THEAC	38-50	4	B:38-50
1	TCP1_1	PS00750	Chaperonins TCP-1 signature 1.	THSA_THEAC	39-51	4	A:39-51
2	TCP1_2	PS00751	Chaperonins TCP-1 signature 2.	THSB_THEAC	59-75	4	B:59-75
2	TCP1_2	PS00751	Chaperonins TCP-1 signature 2.	THSA_THEAC	60-76	4	A:60-76
3	TCP1_3	PS00995	Chaperonins TCP-1 signature 3.	THSB_THEAC	87-95	4	B:87-95
3	TCP1_3	PS00995	Chaperonins TCP-1 signature 3.	THSA_THEAC	88-96	4	A:88-96

(no "Exon" information available for 1A6E)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:503
 aligned with THSA_THEAC | P48424 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:503
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516   
           THSA_THEAC    17 REQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAEHEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519
               SCOP domains d1a6ea1 A:17-145,A:404-519 Thermosome, E domain                                                                                  d1a6ea3 A:146-214,A:368-403 Thermosome, I domain                     d1a6ea2 A:215-367 Thermosome, A-domain                                                                                                                   d1a6ea3 A:146-214,A:368-403         d1a6ea1 A:17-145,A:404-519 Thermosome, E domain                                                                      SCOP domains
               CATH domains 1a6eA01 A:17-143,A:403-519 GROEL, domain 1                                                                                     1a6eA02 A:144-213,A:367-402 GROEL, domain 2                           1a6eA03 A:214-366 GroEL                                                                                                                                  1a6eA02 A:144-213,A:367-402         1a6eA01 A:17-143,A:403-519 GROEL, domain 1                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhh.......eeee.....eeee..hhhhhh......hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh........hhhhhhhhhhhhhhhheee....eee.hhheeeeee........eee.eeee...........eee.eeeeee...................hhhhhhhhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhh..eee....hhhhhhhhhhh.......hhh..hhh.eee.eeeeeee..eeeeeee.......eeeeee....hhhhhhhhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....eeee....eeeehhhh..eeehhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------TCP1_1       --------TCP1_2           -----------TCP1_3   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a6e A  17 REQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516

Chain B from PDB  Type:PROTEIN  Length:502
 aligned with THSB_THEAC | P48425 from UniProtKB/Swiss-Prot  Length:543

    Alignment length:502
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519  
           THSB_THEAC    20 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA 521
               SCOP domains d1a6eb1 B:20-144,B:404-521 Thermosome, E domain                                                                              d1a6eb3 B:145-215,B:368-403 Thermosome, I domain                       d1a6eb2 B:216-367 Thermosome, A-domain                                                                                                                  d1a6eb3 B:145-215,B:368-403         d1a6eb1 B:20-144,B:404-521 Thermosome, E domain                                                                        SCOP domains
               CATH domains 1a6eB01 B:20-143,B:403-520 GROEL, domain 1                                                                                  1a6eB02 B:144-214,B:367-402 GROEL, domain 2                            1a6eB03 B:215-366 GroEL                                                                                                                                 1a6eB02 B:144-214,B:367-402         1a6eB01 B:20-143,B:403-520 GROEL, domain 1                                                                            - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.......eeee.....eeee..hhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhheee....eee.hhheeeeeee...hhh.eee.eeee...........eee.eeeeee.....................hhhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhh..eee....hhhhhhhhhhh.......hhh..hhh.eee.eeeeeee..eeeeeee.......eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....eeee....eeee......eeehhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------TCP1_1       --------TCP1_2           -----------TCP1_3   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a6e B  20 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA 521
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: GROEL; domain 2 (26)

Homologous Superfamily: GROEL, domain 2 (26)

Thermoplasma acidophilum. Organism_taxid: 2303. (2)

1a	1a6eA02	A:144-213,A:367-402
1b	1a6eB02	B:144-214,B:367-402

Architecture: 3-Layer(bba) Sandwich (528)

Topology: GroEL (39)

Homologous Superfamily: GroEL (39)

Thermoplasma acidophilum. Organism_taxid: 2303. (3)

2a	1a6eA03	A:214-366
2b	1a6eB03	B:215-366

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: GROEL; domain 1 (26)

Homologous Superfamily: GROEL, domain 1 (26)

Thermoplasma acidophilum. Organism_taxid: 2303. (2)

3a	1a6eA01	A:17-143,A:403-519
3b	1a6eB01	B:20-143,B:403-520

(no "Pfam Domain" information available for 1A6E)

Asymmetric Unit(hide GO term definitions)

Chain A (THSA_THEAC | P48424)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0051082	unfolded protein binding	Interacting selectively and non-covalently with an unfolded protein.
biological process
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Chain B (THSB_THEAC | P48425)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0051082	unfolded protein binding	Interacting selectively and non-covalently with an unfolded protein.
biological process
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Asymmetric Unit
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	Cis Peptide Bonds
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	1a6e
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	THSA_THEAC \| P48424	:	1a6d 1ass 1asx
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(no "Related Entries Specified in the PDB File" available for 1A6E)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 6)

Exons (0, 0)

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SCOP Domains (6, 6)

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