1DOQ - JenaLib

Title :   THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUS

Authors :   T. Wada, T. Yamazaki, Y. Kyogoku

Date :   21 Dec 99 (Deposition) - 05 Jan 00 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A

Keywords :   Transcription, Rna Polymerase, Thermus Thermophilus, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Wada, T. Yamazaki, Y. Kyogoku
The Structure And The Characteristic Dna Binding Property Of The C-Terminal Domain Of The Rna Polymerase Alpha Subunit From Thermus Thermophilus.
J. Biol. Chem. V. 275 16057 2000
PubMed-ID: 10821859 | Reference-DOI: 10.1074/JBC.275.21.16057
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:69
 aligned with RPOA_THETH | Q9Z9H6 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:69
                                   256       266       276       286       296       306         
           RPOA_THETH   247 EQEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLKE 315
               SCOP domains d1doqa_ A: C-terminal domain of RNA polymerase alpha subunit          SCOP domains
               CATH domains 1doqA00 A:247-315 5' to 3' exonuclease, C-terminal subdomain          CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1doq A 247 EQEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLKE 315
                                   256       266       276       286       296       306

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

NMR Structure(hide GO term definitions)

Chain A (RPOA_THETH | Q9Z9H6)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

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