SCOP 2.04 - JenaLib Tree Browser

Fold: beta and beta-prime subunits of DNA dependent RNA-polymerase (103)

Superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase (103)

Family: RNA-polymerase beta (54)

Protein domain: automated matches (17)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (5)

2NVQ	B:	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH 2'DUTP
3CQZ	B:	CRYSTAL STRUCTURE OF 10 SUBUNIT RNA POLYMERASE II IN COMPLEX WITH THE INHIBITOR ALPHA-AMANITIN
3M3Y	B:	RNA POLYMERASE II ELONGATION COMPLEX C
3S1M	B:	RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARIANT 1)
3S1N	B:	RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARIANT 2)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292] (1)

3RZO

RNA POLYMERASE II INITIATION COMPLEX WITH A 4-NT RNA

Thermus thermophilus HB8 [TaxId: 300852] (4)

2O5I	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE ELONGATION COMPLEX
2O5J	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG
2PPB	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG AND ANTIBIOTIC STREPTOLYDIGIN
3DXJ	C:; M:	CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH THE ANTIBIOTIC MYXOPYRONIN

Thermus thermophilus [TaxId: 274] (7)

1ZYR	C:; M:	STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH THE ANTIBIOTIC STREPTOLYDIGIN
2A68	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFABUTIN
2A69	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFAPENTIN
2A6E	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME
2A6H	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC STERPTOLYDIGIN
2BE5	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH INHIBITOR TAGETITOXIN
3EQL	C:; M:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC MYXOPYRONIN

Protein domain: RBP2 (28)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (27)

1I3Q	B:	RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
1I50	B:	RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION
1I6H	B:	RNA POLYMERASE II ELONGATION COMPLEX
1K83	B:	CRYSTAL STRUCTURE OF YEAST RNA POLYMERASE II COMPLEXED WITH THE INHIBITOR ALPHA AMANITIN
1TWA	B:	RNA POLYMERASE II COMPLEXED WITH ATP
1TWC	B:	RNA POLYMERASE II COMPLEXED WITH GTP
1TWF	B:	RNA POLYMERASE II COMPLEXED WITH UTP AT 2.3 A RESOLUTION
1TWG	B:	RNA POLYMERASE II COMPLEXED WITH CTP
1TWH	B:	RNA POLYMERASE II COMPLEXED WITH 2'DATP
2B63	B:20-1224	COMPLETE RNA POLYMERASE II-RNA INHIBITOR COMPLEX
2B8K	B:20-1224	12-SUBUNIT RNA POLYMERASE II
2E2H	B:20-1223	RNA POLYMERASE II ELONGATION COMPLEX AT 5 MM MG2+ WITH GTP
2E2I	B:20-1224	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DGTP
2E2J	B:20-1222	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH GMPCPP
2JA5	B:20-1224	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX A
2JA6	B:20-1224	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX B
2JA7	B:20-1224; N:20-1224	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX C
2JA8	B:20-1224	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX D
2NVT	B:20-1224	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH GMPCPP
2NVX	B:20-1222	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DUTP
2NVY	B:20-1224	RNA POLYMERASE II FORM II IN 150 MM MN+2
2NVZ	B:20-1223	RNA POLYMERASE II ELONGATION COMPLEX WITH UTP, UPDATED 11/2006
2R7Z	B:20-1224	CISPLATIN LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
2R92	B:20-1224	ELONGATION COMPLEX OF RNA POLYMERASE II WITH ARTIFICIAL RDRP SCAFFOLD
2R93	B:20-1224	ELONGATION COMPLEX OF RNA POLYMERASE II WITH A HEPATITIS DELTA VIRUS-DERIVED RNA STEM LOOP
2VUM	B:20-1224	ALPHA-AMANITIN INHIBITED COMPLETE RNA POLYMERASE II ELONGATION COMPLEX
2YU9	B:20-1224	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH UTP

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292] (1)

3S14

RNA POLYMERASE II INITIATION COMPLEX WITH A 6-NT RNA

Protein domain: RNA-polymerase beta (9)

Thermus aquaticus [TaxId: 271] (4)

1I6V	C:	THERMUS AQUATICUS CORE RNA POLYMERASE-RIFAMPICIN COMPLEX
1YNJ	C:1-1114	TAQ RNA POLYMERASE-SORANGICIN COMPLEX
1YNN	C:1-1114	TAQ RNA POLYMERASE-RIFAMPICIN COMPLEX
2GHO	C:1-1114	RECOMBINANT THERMUS AQUATICUS RNA POLYMERASE FOR STRUCTURAL STUDIES

Thermus thermophilus [TaxId: 274] (5)

1IW7	C:; M:	CRYSTAL STRUCTURE OF THE RNA POLYMERASE HOLOENZYME FROM THERMUS THERMOPHILUS AT 2.6A RESOLUTION
1SMY	C:; M:	STRUCTURAL BASIS FOR TRANSCRIPTION REGULATION BY ALARMONE PPGPP
2CW0	C:1-1119; M:1-1119	CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME AT 3.3 ANGSTROMS RESOLUTION
4G7H	C:; M:	CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX
4G7O	C:; M:	CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX CONTAINING 2 NT OF RNA

Family: RNA-polymerase beta-prime (49)

Protein domain: automated matches (8)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (3)

3M3Y	A:	RNA POLYMERASE II ELONGATION COMPLEX C
3S1M	A:	RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARIANT 1)
3S1N	A:	RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARIANT 2)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292] (1)

3RZO

RNA POLYMERASE II INITIATION COMPLEX WITH A 4-NT RNA

Thermus thermophilus HB8 [TaxId: 300852] (3)

2O5J	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG
2PPB	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG AND ANTIBIOTIC STREPTOLYDIGIN
3DXJ	D:; N:	CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH THE ANTIBIOTIC MYXOPYRONIN

Thermus thermophilus [TaxId: 274] (1)

1ZYR

D:; N:

STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH THE ANTIBIOTIC STREPTOLYDIGIN

Protein domain: RBP1 (25)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (24)

1I3Q	A:	RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
1I50	A:	RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION
1I6H	A:	RNA POLYMERASE II ELONGATION COMPLEX
1K83	A:	CRYSTAL STRUCTURE OF YEAST RNA POLYMERASE II COMPLEXED WITH THE INHIBITOR ALPHA AMANITIN
1TWA	A:	RNA POLYMERASE II COMPLEXED WITH ATP
1TWC	A:	RNA POLYMERASE II COMPLEXED WITH GTP
1TWF	A:	RNA POLYMERASE II COMPLEXED WITH UTP AT 2.3 A RESOLUTION
1TWG	A:	RNA POLYMERASE II COMPLEXED WITH CTP
1TWH	A:	RNA POLYMERASE II COMPLEXED WITH 2'DATP
2B63	A:2-1450	COMPLETE RNA POLYMERASE II-RNA INHIBITOR COMPLEX
2B8K	A:2-1450	12-SUBUNIT RNA POLYMERASE II
2E2H	A:2-1445	RNA POLYMERASE II ELONGATION COMPLEX AT 5 MM MG2+ WITH GTP
2E2I	A:3-1449	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DGTP
2E2J	A:3-1445	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH GMPCPP
2JA5	A:2-1450	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX A
2JA6	A:2-1450	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX B
2JA7	A:2-1450; M:2-1450	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX C
2JA8	A:2-1450	CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX D
2NVQ	A:	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH 2'DUTP
2NVT	A:3-1450	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH GMPCPP
2NVX	A:3-1445	RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DUTP
2NVY	A:2-1450	RNA POLYMERASE II FORM II IN 150 MM MN+2
2NVZ	A:2-1445	RNA POLYMERASE II ELONGATION COMPLEX WITH UTP, UPDATED 11/2006
2YU9	A:3-1450	RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH UTP

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292] (1)

3S14

RNA POLYMERASE II INITIATION COMPLEX WITH A 6-NT RNA

Protein domain: RNA-polymerase beta-prime (16)

Thermus aquaticus [TaxId: 271] (4)

1I6V	D:	THERMUS AQUATICUS CORE RNA POLYMERASE-RIFAMPICIN COMPLEX
1YNJ	D:3-1240	TAQ RNA POLYMERASE-SORANGICIN COMPLEX
1YNN	D:3-1240	TAQ RNA POLYMERASE-RIFAMPICIN COMPLEX
2GHO	D:3-1501	RECOMBINANT THERMUS AQUATICUS RNA POLYMERASE FOR STRUCTURAL STUDIES

Thermus thermophilus [TaxId: 274] (12)

1IW7	D:; N:	CRYSTAL STRUCTURE OF THE RNA POLYMERASE HOLOENZYME FROM THERMUS THERMOPHILUS AT 2.6A RESOLUTION
1SMY	D:; N:	STRUCTURAL BASIS FOR TRANSCRIPTION REGULATION BY ALARMONE PPGPP
2A68	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFABUTIN
2A69	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFAPENTIN
2A6E	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME
2A6H	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC STERPTOLYDIGIN
2BE5	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH INHIBITOR TAGETITOXIN
2CW0	D:2-1505; N:2-1505	CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME AT 3.3 ANGSTROMS RESOLUTION
2O5I	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE ELONGATION COMPLEX
3EQL	D:; N:	CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC MYXOPYRONIN
4G7H	D:; N:	CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX
4G7O	D:; N:	CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX CONTAINING 2 NT OF RNA