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(-) Description

Title :  MOLECULAR TWEEZERS STABILIZE A DISORDERED PROTEIN-PROTEIN INTERFACE
 
Authors :  D. Bier, C. Ottmann
Date :  22 Apr 16  (Deposition) - 10 May 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  14-3-3 Protein, Ppi Stabilization, Supramolecular Ligand, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bier, M. Bartel, J. Briels, C. Heid, S. Mittal, K. Bravo-Rodriguez, A. Sowislok, B. Wettig, L. Brunsveld, E. Sanchez-Garcia, T. Schrader C. Ottmann
Molecular Tweezers Stabilize A Disordered Protein-Protein Interface
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 14-3-3 PROTEIN ZETA/DELTA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YWHAZ
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1
 
Molecule 2 - M-PHASE INDUCER PHOSPHATASE 3
    Chains: C, D
    EC Number: 3.1.3.48
    Engineered: YES
    Fragment: UNP RESIDUES 207-244
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DUAL SPECIFICITY PHOSPHATASE CDC25C
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric/Biological Unit (5, 13)
No.NameCountTypeFull Name
119O4Ligand/IonNATRIUM-(5,7 ,9 ,11 ,16 ,18 ,20 ,22 )-5,7,9,11,16,18,20,22-OCTAHYDRO-5,22:7,20:9,18:11,16-TETRAMETHANONONACEN-8,19-BISPHOSPHATE
2BEZ2Ligand/IonBENZOIC ACID
3CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
4GOL3Ligand/IonGLYCEROL
5SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:64 , GLN A:67 , TYR A:179binding site for residue 19O A 301
02AC2SOFTWAREASN A:183 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191binding site for residue 19O A 302
03AC3SOFTWARELYS A:9 , CSO A:25 , TYR B:82 , LYS B:85binding site for residue GOL A 304
04AC4SOFTWARELYS A:68binding site for residue GOL A 305
05AC5SOFTWARELYS A:193 , ASP A:197 , ARG A:222binding site for residue GOL A 306
06AC6SOFTWAREGLN A:150 , TYR A:178 , LYS A:187 , ASN B:183 , HOH B:403 , 19O C:301binding site for residue 19O B 301
07AC7SOFTWARETYR B:179 , 19O B:301 , ARG C:208 , TYR C:212 , HOH C:415binding site for residue 19O C 301
08AC8SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
09AC9SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
10AD1SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
11AD2SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
12AD3SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
13AD4SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
14AD5SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
15AD6SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
16AD7SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
17AD8SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
18AD9SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
19AE1SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
20AE2SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
21AE3SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302
22AE4SOFTWAREASN A:183 , MET A:218 , GLN A:219 , ARG A:222 , HOH A:416 , GLN B:150 , TYR B:178 , SER B:190 , LEU B:191 , PHE B:196 , MET B:218 , GLN B:219 , ARG B:222binding site for residues BEZ A 303 and BEZ B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JIV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JIV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JIV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JIV)

(-) Exons   (0, 0)

(no "Exon" information available for 5JIV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jiv A   2 DKNELVQKAKLAEQAERYDDMAAcMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDSYKDSTLIMQLLRDNLTLWTS 230
                                    11        21   |    31        41        51        61       |74        84        94       104       114       124       134       144       154       164       174       184       194       204|      219       229 
                                                  25-CSO                                      69|                                                                                                                                204|                    
                                                                                               73                                                                                                                                 210                    


Chain B from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jiv B   2 DKNELVQKAKLAEQAERYDDMAAcMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDYKDSTLIMQLLRDNLTLWT 229
                                    11        21   |    31        41        51        61     || 74        84        94       104       114       124       134       144       154       164       174       184       194       204|      220         
                                                  25-CSO                                    67|                                                                                                                                  204|                  
                                                                                             71                                                                                                                                   211                  


Chain C from PDB  Type:PROTEIN  Length:18
                                                  
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author .................. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                 5jiv C 208 RSGLYRSPsMPENLNRPR 225
                                   217        
                                  216-SEP     


Chain D from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5jiv D 212 YRSPsMPEN 220
                                |    
                              216-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JIV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JIV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JIV)

(-) Gene Ontology  (46, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        1433Z_HUMAN | P63104: 1ib1 1qja 1qjb 2c1j 2c1n 2o02 2wh0 3cu8 3nkx 3rdh 4bg6 4fj3 4hkc 4ihl 4n7g 4n7y 4n84 4wrq 4zdr 5d2d 5d3f 5ewz 5exa 5j31 5jit 5jm4 5nas 5wxn
        MPIP3_HUMAN | P30307: 2ojx 3bzi 3op3 5jit

(-) Related Entries Specified in the PDB File

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