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(-) Description

Title :  MOLECULAR TWEEZERS STABILIZE A DISORDERED PROTEIN-PROTEIN INTERFACE
 
Authors :  D. Bier, C. Ottmann
Date :  22 Apr 16  (Deposition) - 10 May 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.38
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  14-3-3 Protein, Ppi Stabilization, Supramolecular Ligand, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bier, M. Bartel, J. Briels, C. Heid, S. Mittal, K. Bravo-Rodriguez, A. Sowislok, B. Wettig, L. Brunsveld, E. Sanchez-Garcia, T. Schrader C. Ottmann
Molecular Tweezers Stabilize A Disordered Protein-Protein Interface
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 14-3-3 PROTEIN ZETA/DELTA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YWHAZ
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1
 
Molecule 2 - M-PHASE INDUCER PHOSPHATASE 3
    Chains: C, D
    EC Number: 3.1.3.48
    Engineered: YES
    Fragment: UNP RESIDUES 207-244
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DUAL SPECIFICITY PHOSPHATASE CDC25C
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1BEZ2Ligand/IonBENZOIC ACID
2CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
3GOL2Ligand/IonGLYCEROL
4SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:82 , LYS B:9binding site for residue GOL A 301
02AC2SOFTWARETYR B:82 , LYS B:85binding site for residue GOL B 301
03AC3SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
04AC4SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
05AC5SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
06AC6SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
07AC7SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
08AC8SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
09AC9SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
10AD1SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
11AD2SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
12AD3SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
13AD4SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
14AD5SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
15AD6SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
16AD7SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
17AD8SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
18AD9SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
19AE1SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302
20AE2SOFTWAREPHE A:196 , ARG A:222 , GLN B:219 , ARG B:222binding site for residues BEZ A 302 and BEZ B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JIT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JIT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JIT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JIT)

(-) Exons   (0, 0)

(no "Exon" information available for 5JIT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jit A   2 DKNELVQKAKLAEQAERYDDMAAcMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDLSEESYKDSTLIMQLLRDNLTLWTS 230
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201  ||   212       222        
                                                  25-CSO                                                                                                                                                                            204|                        
                                                                                                                                                                                                                                     206                        


Chain B from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jit B   2 DKNELVQKAKLAEQAERYDDMAAcMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDESYKDSTLIMQLLRDNLTLWTS 230
                                    11        21   |    31        41        51        61        73        83        93       103       113       123       133       143       153       163       173       183       193       203||     217       227   
                                                  25-CSO                                       70|                                                                                                                                204|                     
                                                                                                73                                                                                                                                 209                     


Chain C from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 5jit C 211 LYRSPsMPEN 220
                                 | 220
                               216-SEP


Chain D from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 5jit D 213 RSPsMPE 219
                               |   
                             216-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JIT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JIT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JIT)

(-) Gene Ontology  (46, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        1433Z_HUMAN | P63104: 1ib1 1qja 1qjb 2c1j 2c1n 2o02 2wh0 3cu8 3nkx 3rdh 4bg6 4fj3 4hkc 4ihl 4n7g 4n7y 4n84 4wrq 4zdr 5d2d 5d3f 5ewz 5exa 5j31 5jiv 5jm4 5nas 5wxn
        MPIP3_HUMAN | P30307: 2ojx 3bzi 3op3 5jiv

(-) Related Entries Specified in the PDB File

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