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(-) Description

Title :  HUMAN 14-3-3 ISOFORM ZETA IN COMPLEX WITH A DIPHOYPHORYLATED C-RAF PEPTIDE AND COTYLENIN A
 
Authors :  M. Molzan, C. Ottmann
Date :  19 Dec 12  (Deposition) - 25 Sep 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,P
Keywords :  14-3-3 Fold, Raf, All Alpha-Helical, Adapter Protein, Protein-Protein Interaction, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Molzan, S. Kasper, L. Roglin, M. Skwarczynska, T. Sassa, T. Inoue, F. Breitenbuecher, J. Ohkanda, N. Kato, M. Schuler, C. Ottmann
Stabilization Of Physical Raf/14-3-3 Interaction By Cotylenin A As Treatment Strategy For Ras Mutant Cancers.
Acs Chem. Biol. V. 8 1869 2013
PubMed-ID: 23808890  |  Reference-DOI: 10.1021/CB4003464

(-) Compounds

Molecule 1 - 14-3-3 PROTEIN ZETA/DELTA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX HTB
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-230
    Gene: YWHAZ
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN KINASE C INHIBITOR PROTEIN 1, KCIP-1
 
Molecule 2 - RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE
    Chains: P
    EC Number: 2.7.11.1
    Engineered: YES
    Fragment: UNP RESIDUES 229-264
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHETIC PEPTIDE, THE FULL-LENTH C-RAF KINASE OCCURS IN HOMO SPAIENS
    Synonym: PROTO-ONCOGENE C-RAF, CRAF, RAF-1
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
11F52Ligand/Ion(1R,3AS,4R,5R,6R,9AR,10E)-6-({(1S,2R,4S,5R,6R,8S,9S)-5-HYDROXY-2-(METHOXYMETHYL)-9-METHYL-9-[(2S)-OXIRAN-2-YL]-3,7,10,11-TETRAOXATRICYCLO[6.2.1.0~1,6~]UNDEC-4-YL}OXY)-1-(METHOXYMETHYL)-4,9A-DIMETHYL-7-(PROPAN-2-YL)-1,2,3,3A,4,5,6,8,9,9A-DECAHYDRODICYCLOPENTA[A,D][8]ANNULENE-1,5-DIOL
2K2Ligand/IonPOTASSIUM ION
3SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:124 , HOH P:311BINDING SITE FOR RESIDUE K A 301
2AC2SOFTWAREASN A:42 , PHE A:117 , LYS A:120 , MET A:121 , PRO A:165 , ASP A:213 , HOH A:513 , HOH A:537 , THR P:260 , PRO P:261 , VAL P:263BINDING SITE FOR RESIDUE 1F5 A 302
3AC3SOFTWAREASP B:124 , HOH P:313BINDING SITE FOR RESIDUE K B 301
4AC4SOFTWAREASN B:42 , LEU B:43 , PHE B:117 , LYS B:120 , MET B:121 , PRO B:165 , ASP B:213 , HOH B:417 , HOH B:420 , HOH B:427 , THR P:234 , PRO P:235 , ALA P:237BINDING SITE FOR RESIDUE 1F5 B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IHL)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:134 -Gly A:135

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IHL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IHL)

(-) Exons   (0, 0)

(no "Exon" information available for 4IHL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihl A   1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230


Chain B from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihl B   1 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 230
                                    10        20        30        40        50        60        70|       82        92       102       112       122       132  ||   143       153       163       173       183       193       203       213       223       
                                                                                                70|                                                           135|                                                                                             
                                                                                                 73                                                            137                                                                                             


Chain P from PDB  Type:PROTEIN  Length:17
                                                 
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ................. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                 4ihl P 230 HRYsTPHAQRSTsTPNV 263
                               |   256  |    
                             233-SEP|   |    
                                  255   |    
                                      259-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IHL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IHL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IHL)

(-) Gene Ontology  (79, 88)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:134 - Gly A:135   [ RasMol ]  
 

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  RAF1_HUMAN | P04049
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        1433Z_HUMAN | P63104: 1ib1 1qja 1qjb 2c1j 2c1n 2o02 2wh0 3cu8 3nkx 3rdh 4bg6 4fj3 4hkc 4n7g 4n7y 4n84 4wrq 4zdr 5d2d 5d3f 5ewz 5exa 5j31 5jit 5jiv 5jm4 5nas 5wxn
        RAF1_HUMAN | P04049: 1c1y 1faq 1far 1gua 1rfa 3cu8 3iqj 3iqu 3iqv 3kuc 3kud 3nkx 3o8i 3omv 4fj3 4g0n 4g3x 4iea

(-) Related Entries Specified in the PDB File

1a4o 14-3-3 PROTEIN ZETA ISOFORM
1ib1 CRYSTAL STRUCTURE OF THE 14-3-3 ZETA:SEROTONIN N- ACETYLTRANSFERASE COMPLEX
1qja 14-3-3 ZETA/PHOSPHOPEPTIDE COMPLEX (MODE 2)
1qjb 14-3-3 ZETA/PHOSPHOPEPTIDE COMPLEX (MODE 1)
3e6y STRUCTURE OF 14-3-3 IN COMPLEX WITH THE DIFFERENTIATION- INDUCING AGENT COTYLENIN A
3smk CRYSTAL STRUCTURE OF HUMAN 14-3-3 SIGMA C38V/N166H IN COMPLEX WITH TASK-3 PEPTIDE AND STABILIZER COTYLENIN A
4fj3 14-3-3 ISOFORM ZETA IN COMPLEX WITH A DIPHOYPHORYLATED C- RAF PEPTIDE
4iea