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(-) Description

Title :  CRYSTAL STRUCTURE OF 14-3-3[ZETA]-LKB1 FUSION PROTEIN
 
Authors :  S. Ding, Z. B. Shi
Date :  18 Apr 15  (Deposition) - 09 Sep 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Chimeric Protein, Regulatory Protein, Tumor Suppressor, Serine/Threonine-Protein Kinase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Ding, R. Zhou, Y. Zhu
Structure Of The 14-3-3[Zeta]-Lkb1 Fusion Protein Provides Insight Into A Novel Ligand-Binding Mode Of 14-3-3
Acta Crystallogr. , Sect. F V. 71 1114 2015
PubMed: search  |  Reference-DOI: 10.1107/S2053230X15012595

(-) Compounds

Molecule 1 - 14-3-3 PROTEIN ZETA/DELTA,GGSGGS LINKER,SERINE/THREONINE- PROTEIN KINASE STK11
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODONPLUS
    Fragment: UNP RESIDUES 1-230,UNP RESIDUES 333-340
    Gene: YWHAZ, STK11, LKB1, PJS
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS, SYNTHETIC CONSTRUCT
    Organism Taxid: 9606, 32630
    Synonym: PROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1,LIVER KINASE B1, HLKB1,RENAL CARCINOMA ANTIGEN NY-REN-19

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
3TME6Ligand/IonPROPANE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:37 , ASN A:38 , GLU A:39 , ASN B:183binding site for residue GOL A 301
02AC2SOFTWAREGLN A:219 , ARG A:222 , TME A:306binding site for residue GOL A 302
03AC3SOFTWAREARG A:56 , ARG A:127 , TYR A:128binding site for residue SO4 A 303
04AC4SOFTWAREGLU A:14binding site for residue TME A 304
05AC5SOFTWAREASN A:42binding site for residue TME A 305
06AC6SOFTWARETYR A:211 , GOL A:302binding site for residue TME A 306
07AC7SOFTWARELYS A:3 , GLN A:32binding site for residue TME A 307
08AC8SOFTWARESER B:37 , ASN B:38 , GLU B:39binding site for residue GOL B 301
09AC9SOFTWAREARG B:56 , ARG B:127 , TYR B:128 , ARG B:237binding site for residue SO4 B 302
10AD1SOFTWAREILE B:93 , ASP B:96binding site for residue TME B 303
11AD2SOFTWAREARG B:60binding site for residue TME B 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZDR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu B:206 -Ser B:207

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZDR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZDR)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZDR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zdr A  -6 LYKKAGLMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSRSMEVVPY 244
                                     3        13        23        33        43        53        63      ||75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225    || 241   
                                                                                                       70|                                                                                                                                                          230|       
                                                                                                        73                                                                                                                                                           237       


Chain B from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zdr B  -7 SLYKKAGLMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSESYKDSTLIMQLLRDNLTLWTSGSRSME 240
                                     2        12        22        32        42        52        62       |74        84        94       104       114       124       134       144       154       164       174       184       194       204   ||  215       225     ||239 
                                                                                                        70|                                                                                                                                    208|                  231|    
                                                                                                         73                                                                                                                                     210                   236
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZDR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZDR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZDR)

(-) Gene Ontology  (83, 90)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu B:206 - Ser B:207   [ RasMol ]  
 

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  4zdr
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  STK11_HUMAN | Q15831
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        1433Z_HUMAN | P63104: 1ib1 1qja 1qjb 2c1j 2c1n 2o02 2wh0 3cu8 3nkx 3rdh 4bg6 4fj3 4hkc 4ihl 4n7g 4n7y 4n84 4wrq 5d2d 5d3f 5ewz 5exa 5j31 5jit 5jiv 5jm4 5nas 5wxn
        STK11_HUMAN | Q15831: 2wtk 5wxn

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZDR)