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(-) Description

Title :  FGFR4 IN COMPLEX WITH PONATINIB
 
Authors :  J. Tucker, T. Klein, J. Breed, A. Breeze, R. Overman, C. Phillips, R. A. N
Date :  27 Aug 14  (Deposition) - 03 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Kinase Dfg-Out Fgfr Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Tucker, T. Klein, J. Breed, A. L. Breeze, R. Overman, C. Phillips, R. A. Norman
Structural Insights Into Fgfr Kinase Isoform Selectivity: Diverse Binding Modes Of Azd4547 And Ponatinib In Complex With Fgfr1 And Fgfr4
Structure V. 22 1764 2014
PubMed-ID: 25465127  |  Reference-DOI: 10.1016/J.STR.2014.09.019

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 4
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN, RESIDUES 447-753
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-4, FGFR4, CD334

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
10LI1Ligand/Ion3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4-[(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}BENZAMIDE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:639 , ILE A:640 , HOH A:2224BINDING SITE FOR RESIDUE SO4 A1751
2AC2SOFTWARELEU A:473 , ALA A:501 , LYS A:503 , GLU A:520 , MET A:524 , ILE A:527 , ILE A:534 , VAL A:550 , GLU A:551 , ALA A:553 , CYS A:608 , ILE A:609 , HIS A:610 , ARG A:611 , LEU A:619 , ILE A:628 , ALA A:629 , ASP A:630 , PHE A:631BINDING SITE FOR RESIDUE 0LI A1752

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UXQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:632 -Leu A:633

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UXQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UXQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4UXQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhh.eeeeeeeee...eeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uxq A 452 LDLPLDPLWEFPRDRLVLGKPLGEGAFGQVVRAEAFGMDPARPDQASTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPGPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAV 750
                                   461       471       481       491       501       511       521       531       541       551       561      |584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744      
                                                                                                                                              568|                                                                                                                                                                        
                                                                                                                                               582
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UXQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UXQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UXQ)

(-) Gene Ontology  (51, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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  FGFR4_HUMAN | P22455
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR4_HUMAN | P22455: 1qct 4qq5 4qqc 4qqj 4qqt 4qrc 4r6v 4tye 4tyg 4tyi 4tyj 4xcu 5jkg

(-) Related Entries Specified in the PDB File

4v01 FGFR1 IN COMPLEX WITH PONATINIB (CO-CRYSTALLISATION).
4v04 FGFR1 IN COMPLEX WITH PONATINIB.
4v05 FGFR1 IN COMPLEX WITH AZD4547.