PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4UWC
Biol. Unit 1
Info
Asym.Unit (213 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (104 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE IN COMPLEX WITH JK-P3
Authors
:
H. Beeston, J. Tucker, J. Kankanala
Date
:
11 Aug 14 (Deposition) - 02 Sep 15 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Receptor Tyrosine Kinase, Transferase Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Beeston
Validation Of Ims-Ms As A Screening Tool To Identify Type I Kinase Inhibitors Of Fgfr1 Kinase
To Be Published
[
close entry info
]
Hetero Components
(4, 14)
Info
All Hetero Components
1a: 3,4-DIMETHOXY-N-(5-PHENYL-1H-PYRAZ... (4Y0a)
1b: 3,4-DIMETHOXY-N-(5-PHENYL-1H-PYRAZ... (4Y0b)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: PROPANOIC ACID (PPIa)
3b: PROPANOIC ACID (PPIb)
3c: PROPANOIC ACID (PPIc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4Y0
1
Ligand/Ion
3,4-DIMETHOXY-N-(5-PHENYL-1H-PYRAZOL-3-YL)BENZAMIDE
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
PPI
2
Ligand/Ion
PROPANOIC ACID
4
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
GLU A:531 , ALA A:640 , ASP A:641 , PHE A:642 , GLY A:643 , 4Y0 A:1773 , HOH A:2021
BINDING SITE FOR RESIDUE EDO A 1766
02
AC3
SOFTWARE
TRP A:684 , TYR A:701 , ARG A:718 , MET A:719 , TRP A:737 , HOH A:2091
BINDING SITE FOR RESIDUE EDO A 1767
03
AC7
SOFTWARE
ALA A:615 , THR A:746 , PHE A:747 , LYS A:748 , HOH A:2164 , HOH A:2165
BINDING SITE FOR RESIDUE EDO A 1768
04
AC8
SOFTWARE
ARG A:470 , TRP A:471 , SO4 A:1777 , SO4 A:1779
BINDING SITE FOR RESIDUE EDO A 1769
05
BC1
SOFTWARE
LYS A:714
BINDING SITE FOR RESIDUE EDO A 1770
06
BC2
SOFTWARE
TYR A:572 , LEU A:595 , ASP A:599 , GLN A:606 , ASN A:635
BINDING SITE FOR RESIDUE EDO A 1771
07
BC3
SOFTWARE
LYS A:665 , GLY A:703 , VAL A:704 , HOH A:2108
BINDING SITE FOR RESIDUE EDO A 1772
08
BC4
SOFTWARE
LEU A:484 , ILE A:545 , VAL A:561 , GLU A:562 , TYR A:563 , ALA A:564 , SER A:565 , GLY A:567 , GLU A:571 , LEU A:630 , EDO A:1766 , PPI A:1775
BINDING SITE FOR RESIDUE 4Y0 A 1773
09
BC6
SOFTWARE
ARG A:577 , GLY A:698 , SER A:699 , HIS B:717
BINDING SITE FOR RESIDUE PPI A 1774
10
BC8
SOFTWARE
LYS A:566 , TYR A:572 , ARG A:576 , 4Y0 A:1773
BINDING SITE FOR RESIDUE PPI A 1775
11
BC9
SOFTWARE
ARG A:570 , ARG A:627 , THR A:657 , ASN A:659 , ARG A:661 , HOH A:2076 , HOH A:2166
BINDING SITE FOR RESIDUE SO4 A 1776
12
CC2
SOFTWARE
ARG A:470 , TRP A:471 , GLU A:472 , LEU A:500 , LEU A:548 , GLY A:549 , EDO A:1769
BINDING SITE FOR RESIDUE SO4 A 1777
13
CC3
SOFTWARE
GLY A:539 , LYS A:540 , LYS A:618 , HOH A:2031 , HOH A:2167 , HOH A:2168
BINDING SITE FOR RESIDUE SO4 A 1778
14
CC4
SOFTWARE
SER A:584 , TYR A:585 , ARG B:734
BINDING SITE FOR RESIDUE SO4 B 1773
15
CC5
SOFTWARE
ARG A:470 , LYS A:618 , HIS A:679 , EDO A:1769 , HOH A:2004
BINDING SITE FOR RESIDUE SO4 A 1779
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (213 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (104 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4UWC
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help