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(-) Description

Title :  INSULIN IN COMPLEX WITH SITE 1 OF THE HUMAN INSULIN RECEPTOR
 
Authors :  M. C. Lawrence, J. G. Menting
Date :  15 Jan 14  (Deposition) - 27 Aug 14  (Release) - 10 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Cell Surface Receptor/Immune System, Insulin Receptor, Ct Peptide, Insulin, Hormone Receptor-Hormone-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Menting, Y. Yang, S. J. Chan, N. B. Phillips, B. J. Smith, J. Whittaker, N. P. Wickramasinghe, L. J. Whittaker, V. Pandyarajan, Z. L. Wan, S. P. Yadav, J. M. Carroll, N. Strokes, C. T. Roberts, F. Ismail-Beigi, W. Milewski, D. F. Steiner, V. S. Chauhan, C. W. Ward, M. A. Weiss, M. C. Lawrence
Protective Hinge In Insulin Opens To Enable Its Receptor Engagement.
Proc. Natl. Acad. Sci. Usa V. 111 E3395 2014
PubMed-ID: 25092300  |  Reference-DOI: 10.1073/PNAS.1412897111

(-) Compounds

Molecule 1 - INSULIN A CHAIN
    Chains: A
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Taxid: 4932
    Fragment: UNP RESIDUES 90-110
    Gene: INS
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: INSULIN B CHAIN, INSULIN A CHAIN
 
Molecule 2 - INSULIN B CHAIN
    Chains: B
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Taxid: 4932
    Fragment: UNP RESIDUES 25-54
    Gene: INS
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: INSULIN B CHAIN, INSULIN A CHAIN
 
Molecule 3 - MONOCLONAL ANTIBODY FAB 83-7 FRAGMENT - HEAVY CHAIN
    Chains: C
    Engineered: YES
    Expression System: MUS MUSCULUS
    Expression System Cell Line: HYBRIDOMA CELL
    Expression System Taxid: 10090
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 4 - MONOCLONAL ANTIBODY FAB 83-7 FRAGMENT - LIGHT CHAIN
    Chains: D
    Engineered: YES
    Expression System: MUS MUSCULUS
    Expression System Cell Line: HYBRIDOMA CELL
    Expression System Taxid: 10090
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 5 - INSULIN RECEPTOR DOMAINS L1-CR
    Chains: E
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Cell Line: LEC 8 MUTANT CHO CELL
    Expression System Common: CHINESE HAMSTER
    Expression System Taxid: 10029
    Fragment: L1-CR, UNP RESIDUES 28-377
    Gene: INSR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IR, INSULIN RECEPTOR SUBUNIT ALPHA, INSULIN RECEPTOR SUBUNIT BETA
 
Molecule 6 - INSULIN RECEPTOR ALPHA-CT PEPTIDE
    Chains: F
    Engineered: YES
    Fragment: ALPHA-CT PEPTIDE, UNP RESIDUES 731-746
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CHEMICAL SYNTHESIS
    Synonym: IR, INSULIN RECEPTOR SUBUNIT ALPHA, INSULIN RECEPTOR SUBUNIT BETA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2FUC1Ligand/IonALPHA-L-FUCOSE
3MAN1Ligand/IonALPHA-D-MANNOSE
4NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:22 , ASN E:16 , THR E:18BINDING SITE FOR MONO-SACCHARIDE NAG E 501 BOUND TO ASN E 16
2AC2SOFTWAREHIS E:21 , GLU E:24 , ASN E:25BINDING SITE FOR MONO-SACCHARIDE NAG E 502 BOUND TO ASN E 25
3AC3SOFTWAREASN E:111 , ARG E:114 , SER E:134 , ILE E:136 , LEU E:137 , ASP E:138 , LEU E:213BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 111 RESIDUES 503 TO 506
4AC4SOFTWAREASN E:108 , LYS E:190 , ASN E:215BINDING SITE FOR MONO-SACCHARIDE NAG E 507 BOUND TO ASN E 215
5AC5SOFTWARECYS E:253 , ASN E:255BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 255 RESIDUES 508 TO 511

(-) SS Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:11
2A:7 -B:7
3A:20 -B:19
4C:22 -C:95
5D:23 -D:94
6E:8 -E:26
7E:126 -E:155
8E:159 -E:182
9E:169 -E:188
10E:192 -E:201
11E:196 -E:207
12E:208 -E:216
13E:212 -E:225
14E:228 -E:237
15E:241 -E:253
16E:259 -E:284
17E:288 -E:301
18E:304 -E:308

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser D:7 -Pro D:8
2Pro E:243 -Pro E:244

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OGA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OGA)

(-) Exons   (0, 0)

(no "Exon" information available for 4OGA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author hhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4oga A   1 GIVEQCCTSICSLYQLENYCN  21
                                    10        20 


Chain B from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4oga B   7 CGSHLVEALYLVCGERGFFYT  27
                                    16        26 


Chain C from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee.......eeeeeee......eeeeee.....eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeee.............eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4oga C   1 QVQLKESGPGLVAPSQSLSITCTVSGFPLTAYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCARDPYGSKPMDYWGQGTSVTVSS 118
                                    10        20        30        40        50        60        70        80        90       100       110        


Chain D from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeeee...eeeeeeee.....hhhhh...eeeeee......eeeee...ee.......eeeeee..eeeeeee..hhhhheeeeeee.....ee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4oga D   1 DIVMSQSPSSLVVSVGEKVTMSCKSSQSLLYSSNQKNFLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYFRYRTFGGGTKLEIKRA 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain E from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhh...eeeeeeeeeee...hhhhhh........ee...eeeeee..............ee........eeeeee..............ee...eeeeeee.........hhhhh.......eeeee.hhhh..........ee....ee..eee..ee....hhhhh.................................eee..eee......eeee...eeeehhhhhhhhh...eee..eee......eee......eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4oga E   5 GEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPK 310
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154    || 172       182       192       202       212       222       232       242       252       262  ||   282       292       302        
                                                                                                                                                                                    159|                                                                                              265|                                  
                                                                                                                                                                                     168                                                                                               276                                  


Chain F from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4oga F 705 FEDYLHNVVFVPRPS 719
                                   714
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OGA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OGA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OGA)

(-) Gene Ontology  (153, 172)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        INSR_HUMAN | P06213: 1gag 1i44 1ir3 1irk 1p14 1rqq 2auh 2b4s 2hr7 2mfr 2z8c 3bu3 3bu5 3bu6 3ekk 3ekn 3eta 3w11 3w12 3w13 3w14 4ibm 4xlv 4xss 4xst 4zxb 5e1s 5hhw 5j3h
        INS_HUMAN | P01308: 1a7f 1ai0 1aiy 1b9e 1ben 1efe 1ev3 1ev6 1evr 1fu2 1fub 1g7a 1g7b 1guj 1hiq 1his 1hit 1hls 1htv 1hui 1iog 1ioh 1j73 1jca 1jco 1jk8 1k3m 1kmf 1lkq 1lph 1mhi 1mhj 1mso 1os3 1os4 1q4v 1qiy 1qiz 1qj0 1rwe 1sf1 1sjt 1sju 1t0c 1t1k 1t1p 1t1q 1trz 1tyl 1tym 1uz9 1vkt 1w8p 1xda 1xgl 1xw7 1zeg 1zeh 1znj 2aiy 2c8q 2c8r 2ceu 2g54 2g56 2h67 2hh4 2hho 2hiu 2jmn 2jum 2juu 2juv 2jv1 2jzq 2k91 2k9r 2kjj 2kju 2kqp 2kqq 2kxk 2l1y 2l1z 2lgb 2lwz 2m1d 2m1e 2m2m 2m2n 2m2o 2m2p 2mli 2mpg 2mpi 2mvc 2mvd 2n2v 2n2w 2n2x 2oly 2olz 2om0 2om1 2omg 2omh 2omi 2omq 2qiu 2r34 2r35 2r36 2rn5 2vjz 2vk0 2w44 2wby 2wc0 2wru 2wrv 2wrw 2wrx 2ws0 2ws1 2ws4 2ws6 2ws7 3aiy 3bxq 3e7y 3e7z 3exx 3fq9 3hyd 3i3z 3i40 3ilg 3inc 3ir0 3jsd 3kq6 3p2x 3p33 3q6e 3rov 3tt8 3u4n 3utq 3uts 3utt 3v19 3v1g 3w11 3w12 3w13 3w7y 3w7z 3w80 3zi3 3zqr 3zs2 3zu1 4aiy 4ajx 4ajz 4ak0 4akj 4cxl 4cxn 4cy7 4efx 4eww 4ewx 4ewz 4ex0 4ex1 4exx 4ey1 4ey9 4eyd 4eyn 4eyp 4f0n 4f0o 4f1a 4f1b 4f1c 4f1d 4f1f 4f1g 4f4t 4f4v 4f51 4f8f 4fg3 4fka 4gbc 4gbi 4gbk 4gbl 4gbn 4iuz 4iyd 4iyf 4nib 4p65 4q5z 4rxw 4une 4ung 4unh 4wdi 4xc4 4y19 4y1a 4z76 4z77 4z78 5aiy 5boq 5bpo 5bqq 5bts 5c0d 5cjo 5cny 5co2 5co6 5co9 5e7w 5ems 5en9 5ena 5hpr 5hpu 5hqi 5hrq 5hyj 5mam 5mt3 5mt9 5udp

(-) Related Entries Specified in the PDB File

3w11 3w12 3w13