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(-) Description

Title :  HUMAN INSULIN RECEPTOR DOMAINS L1-CR IN COMPLEX WITH PEPTIDE S519C16 AND 83-7 FV
 
Authors :  M. Lawrence, J. Menting, C. Lawrence
Date :  30 Mar 16  (Deposition) - 15 Jun 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.27
Chains :  Asym./Biol. Unit :  B,C,D,E
Keywords :  Insulin Receptor Insulin Mimetic Peptide Fv Fragment, Hormone Receptor-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. F. Lawrence, M. B. Margetts, J. G. Menting, N. A. Smith, B. J. Smith, C. W. Ward, M. C. Lawrence
Insulin Mimetic Peptide Disrupts The Primary Binding Site O The Insulin Receptor.
J. Biol. Chem. V. 291 15473 2016
PubMed-ID: 27281820  |  Reference-DOI: 10.1074/JBC.M116.732180

(-) Compounds

Molecule 1 - PEPTIDE S519C16
    Chains: B
    Engineered: YES
    Organism Scientific: ENDOTHIA GYROSA
    Organism Taxid: 40263
    Other Details: 16 C-TERMINAL RESIDUES OF PEPTIDE S519: SER-LEU-ASP- GLU-SER-PHE-TYR-ASP-TRP-PHE-GLU-ARG-GLN-LEU
    Synthetic: YES
 
Molecule 2 - MAB 83-7 FAB HEAVY CHAIN
    Chains: C
    Engineered: YES
    Expression System: BREVIBACILLUS
    Expression System Taxid: 55080
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - MAB 83-7 FAB LIGHT CHAIN
    Chains: D
    Engineered: YES
    Expression System: BREVIBACILLUS
    Expression System Taxid: 55080
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 4 - INSULIN RECEPTOR
    Chains: E
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Strain: LEC8
    Expression System Taxid: 10029
    Fragment: UNP RESIDUES 28-337
    Gene: INSR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IR

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : BCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUC2Ligand/IonALPHA-L-FUCOSE
3MAN2Ligand/IonALPHA-D-MANNOSE
4NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN E:16 , THR E:18binding site for Mono-Saccharide NAG E 1101 bound to ASN E 16
2AC2SOFTWAREGLU E:24 , ASN E:25 , MAN E:1111binding site for Poly-Saccharide residues NAG E 1102 through FUC E 1104 bound to ASN E 25
3AC3SOFTWAREASN E:111 , SER E:134 , ARG E:135 , ILE E:136 , LEU E:137 , ASP E:138 , LEU E:213 , ARG E:229binding site for Poly-Saccharide residues NAG E 1105 through NAG E 1106 bound to ASN E 111
4AC4SOFTWAREASN E:108 , LYS E:190 , CYS E:201 , ASN E:215binding site for Mono-Saccharide NAG E 1107 bound to ASN E 215
5AC5SOFTWAREASN C:56 , PHE E:39 , LYS E:40 , ARG E:42 , HIS E:100 , ASN E:255 , FUC E:1104binding site for Poly-Saccharide residues NAG E 1108 through FUC E 1114 bound to ASN E 255

(-) SS Bonds  (14, 14)

Asymmetric/Biological Unit
No.Residues
1C:22 -C:95
2D:23 -D:94
3E:8 -E:26
4E:126 -E:155
5E:159 -E:182
6E:169 -E:188
7E:192 -E:201
8E:196 -E:207
9E:208 -E:216
10E:212 -E:225
11E:228 -E:237
12E:241 -E:253
13E:259 -E:284
14E:288 -E:301

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser D:7 -Pro D:8
2Pro E:243 -Pro E:244

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J3H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J3H)

(-) Exons   (0, 0)

(no "Exon" information available for 5J3H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 5j3h B  22 SLDESFYDWFERQL  35
                                    31    


Chain C from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..........eeeeeeee.......eeeeeee......eeeeee.....eee...hhh.eeeeeehhh.eeeeee...hhhhheeeeeeee.............eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 5j3h C   1 QVQLKESGPGLVAPSQSLSITCTVSGFPLTAYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCARDPYGSKPMDYWGQGTSVTV 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain D from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee.....ee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 5j3h D   1 DIVMSQSPSSLVVSVGEKVTMSCKSSQSLLYSSNQKNFLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYFRYRTFGGGTKLEIK 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain E from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..hhhhhhhh.eeeeeeeeeeeee...hhhhhhh.......ee...eeeeee..............ee........eeeeee..............ee...eeeee...........hhhhh.......eee.............ee..ee.eee..ee....hhhhh.................................eee..eee.......eee...eeehhhhhhhhhh..eee..eee.......ee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j3h E   5 GEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDECGDICNCPATVFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKYVIHNNKCIPECPSGYTMNSLLCTP 303
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144     ||157 ||    179       189       199       209       219       229       239       249       259     ||280       290     ||302 
                                                                                                                                                                           150|  159|  173|                                                                                    265|                296|    
                                                                                                                                                                            154   168   178                                                                                     277                 299
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J3H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J3H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J3H)

(-) Gene Ontology  (98, 98)

Asymmetric/Biological Unit(hide GO term definitions)

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    Pro E:243 - Pro E:244   [ RasMol ]  
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 Related Entries

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UniProtKB/Swiss-Prot
        INSR_HUMAN | P06213: 1gag 1i44 1ir3 1irk 1p14 1rqq 2auh 2b4s 2hr7 2mfr 2z8c 3bu3 3bu5 3bu6 3ekk 3ekn 3eta 3w11 3w12 3w13 3w14 4ibm 4oga 4xlv 4xss 4xst 4zxb 5e1s 5hhw

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