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(-) Description

Title :  R6 HUMAN INSULIN HEXAMER (SYMMETRIC), NMR, 'RED' SUBSTATE, AVERAGE STRUCTURE
 
Authors :  S. I. O'Donoghue, X. Chang, R. Abseher, M. Nilges, J. J. Led
Date :  29 Dec 98  (Deposition) - 28 Feb 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Hormone, Glucose Metabolism, Hormone/Growth Factor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. I. O'Donoghue, X. Chang, R. Abseher, M. Nilges, J. J. Led
Unraveling The Symmetry Ambiguity In A Hexamer: Calculation Of The R6 Human Insulin Structure.
J. Biomol. Nmr V. 16 93 2000
PubMed-ID: 10723989  |  Reference-DOI: 10.1023/A:1008323819099
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (INSULIN)
    Chains: A, C, E, G, I, K
    Engineered: YES
    Fragment: ALPHA CHAIN
    Other Details: A PHENOL MOLECULE IS NON-COVALENTLY ATTACHED TO EACH INSULIN MONOMER
    Other Details - Source: THE PROTEIN WAS CHEMICALLY SYNTHESIZED FROM THE SECRETION OF HUMAN (HOMO SAPIENS) PANCREATIC CELLS.
    Synthetic: YES
 
Molecule 2 - PROTEIN (INSULIN)
    Chains: B, D, F, H, J, L
    Engineered: YES
    Fragment: BETA CHAIN
    Other Details: A PHENOL MOLECULE IS NON-COVALENTLY ATTACHED TO EACH INSULIN MONOMER
    Other Details - Source: THE PROTEIN WAS CHEMICALLY SYNTHESIZED FROM THE SECRETION OF HUMAN (HOMO SAPIENS) PANCREATIC CELLS.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

NMR Structure (1, 6)
No.NameCountTypeFull Name
1IPH6Ligand/IonPHENOL

(-) Sites  (8, 8)

NMR Structure (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:10 , CYS A:11 , LEU A:16 , LEU B:11 , ALA B:14 , LEU F:6 , LEU H:17BINDING SITE FOR RESIDUE IPH A 22
2AC2SOFTWAREILE C:10 , CYS C:11 , LEU C:16 , LEU D:11 , ALA D:14 , LEU J:17 , LEU L:6BINDING SITE FOR RESIDUE IPH C 22
3AC3SOFTWAREILE E:10 , CYS E:11 , LEU E:16 , LEU F:11 , ALA F:14 , LEU J:6 , LEU L:17BINDING SITE FOR RESIDUE IPH E 22
4AC4SOFTWARELEU B:17 , LEU D:6 , ILE G:10 , CYS G:11 , LEU G:16 , LEU H:11 , ALA H:14BINDING SITE FOR RESIDUE IPH G 22
5AC5SOFTWARELEU B:6 , LEU D:17 , ILE I:10 , CYS I:11 , LEU I:16 , LEU J:11 , ALA J:14BINDING SITE FOR RESIDUE IPH I 22
6AC6SOFTWARELEU F:17 , LEU H:6 , ILE K:10 , CYS K:11 , LEU K:16 , LEU L:11 , ALA L:14BINDING SITE FOR RESIDUE IPH K 22
7ZN1AUTHORHIS B:10 , HIS F:10 , HIS J:10IN THE CRYSTAL STRUCTURE, 1ZNJ, THESE RESIDUES ARE COORDINATED BY A ZINC ATOM. THE ZINC ATOM IS NOT INCLUDED SINCE IT COULD NOT BE OBSERVED IN THE NMR SPECTRA.
8ZN2AUTHORHIS D:10 , HIS H:10 , HIS L:10IN THE CRYSTAL STRUCTURE, 1ZNJ, THESE RESIDUES ARE COORDINATED BY A ZINC ATOM. THE ZINC ATOM IS NOT INCLUDED SINCE IT COULD NOT BE OBSERVED IN THE NMR SPECTRA.

(-) SS Bonds  (18, 18)

NMR Structure
No.Residues
1A:6 -A:11
2A:7 -B:7
3A:20 -B:19
4C:6 -C:11
5C:7 -D:7
6C:20 -D:19
7E:6 -E:11
8E:7 -F:7
9E:20 -F:19
10G:6 -G:11
11G:7 -H:7
12G:20 -H:19
13I:6 -I:11
14I:7 -J:7
15I:20 -J:19
16K:6 -K:11
17K:7 -L:7
18K:20 -L:19

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AIY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AIY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AIY)

(-) Exons   (0, 0)

(no "Exon" information available for 5AIY)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains d5aiy.1 B:,A: Insulin SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhh......hhhhhhhee Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5aiy A  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain B from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d5aiy.1 B:,A: Insulin          SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  5aiy B  1 FVNQHLCGSHLVEALYLVCGERGFFYTPKT 30
                                    10        20        30


Chain C from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains d5aiy.2 D:,C: Insulin SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhh......hhhhhhhee Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5aiy C  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain D from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d5aiy.2 D:,C: Insulin          SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  5aiy D  1 FVNQHLCGSHLVEALYLVCGERGFFYTPKT 30
                                    10        20        30


Chain E from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains d5aiy.3 F:,E: Insulin SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhh......hhhhhhhee Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5aiy E  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain F from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d5aiy.3 F:,E: Insulin          SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  5aiy F  1 FVNQHLCGSHLVEALYLVCGERGFFYTPKT 30
                                    10        20        30


Chain G from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains d5aiy.4 H:,G: Insulin SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhh......hhhhhhhee Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5aiy G  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain H from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d5aiy.4 H:,G: Insulin          SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  5aiy H  1 FVNQHLCGSHLVEALYLVCGERGFFYTPKT 30
                                    10        20        30


Chain I from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains d5aiy.5 J:,I: Insulin SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhh......hhhhhhhee Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5aiy I  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain J from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d5aiy.5 J:,I: Insulin          SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  5aiy J  1 FVNQHLCGSHLVEALYLVCGERGFFYTPKT 30
                                    10        20        30


Chain K from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains d5aiy.6 L:,K: Insulin SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhh......hhhhhhhee Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5aiy K  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain L from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d5aiy.6 L:,K: Insulin          SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  5aiy L  1 FVNQHLCGSHLVEALYLVCGERGFFYTPKT 30
                                    10        20        30
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AIY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AIY)

(-) Gene Ontology  (74, 74)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        INS_HUMAN | P01308: 1a7f 1ai0 1aiy 1b9e 1ben 1efe 1ev3 1ev6 1evr 1fu2 1fub 1g7a 1g7b 1guj 1hiq 1his 1hit 1hls 1htv 1hui 1iog 1ioh 1j73 1jca 1jco 1jk8 1k3m 1kmf 1lkq 1lph 1mhi 1mhj 1mso 1os3 1os4 1q4v 1qiy 1qiz 1qj0 1rwe 1sf1 1sjt 1sju 1t0c 1t1k 1t1p 1t1q 1trz 1tyl 1tym 1uz9 1vkt 1w8p 1xda 1xgl 1xw7 1zeg 1zeh 1znj 2aiy 2c8q 2c8r 2ceu 2g54 2g56 2h67 2hh4 2hho 2hiu 2jmn 2jum 2juu 2juv 2jv1 2jzq 2k91 2k9r 2kjj 2kju 2kqp 2kqq 2kxk 2l1y 2l1z 2lgb 2lwz 2m1d 2m1e 2m2m 2m2n 2m2o 2m2p 2mli 2mpg 2mpi 2mvc 2mvd 2n2v 2n2w 2n2x 2oly 2olz 2om0 2om1 2omg 2omh 2omi 2omq 2qiu 2r34 2r35 2r36 2rn5 2vjz 2vk0 2w44 2wby 2wc0 2wru 2wrv 2wrw 2wrx 2ws0 2ws1 2ws4 2ws6 2ws7 3aiy 3bxq 3e7y 3e7z 3exx 3fq9 3hyd 3i3z 3i40 3ilg 3inc 3ir0 3jsd 3kq6 3p2x 3p33 3q6e 3rov 3tt8 3u4n 3utq 3uts 3utt 3v19 3v1g 3w11 3w12 3w13 3w7y 3w7z 3w80 3zi3 3zqr 3zs2 3zu1 4aiy 4ajx 4ajz 4ak0 4akj 4cxl 4cxn 4cy7 4efx 4eww 4ewx 4ewz 4ex0 4ex1 4exx 4ey1 4ey9 4eyd 4eyn 4eyp 4f0n 4f0o 4f1a 4f1b 4f1c 4f1d 4f1f 4f1g 4f4t 4f4v 4f51 4f8f 4fg3 4fka 4gbc 4gbi 4gbk 4gbl 4gbn 4iuz 4iyd 4iyf 4nib 4oga 4p65 4q5z 4rxw 4une 4ung 4unh 4wdi 4xc4 4y19 4y1a 4z76 4z77 4z78 5boq 5bpo 5bqq 5bts 5c0d 5cjo 5cny 5co2 5co6 5co9 5e7w 5ems 5en9 5ena 5hpr 5hpu 5hqi 5hrq 5hyj 5mam 5mt3 5mt9 5udp

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