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(-) Description

Title :  HUMAN INSULIN WITH INTRA-CHAIN CHEMICAL CROSSLINK BETWEEN MODIFIED B24 AND B29
 
Authors :  A. M. Brzozowski, J. P. Turkenburg, J. Jiracek, L. Zakova
Date :  27 May 15  (Deposition) - 03 Feb 16  (Release) - 03 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,E,F  (1x)
Biol. Unit 2:  C,D,G,H  (1x)
Keywords :  Hormone, Chemical Crosslink, B24-B29, Specificity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Vikova, M. Collinsova, E. Kletvikova, M. Budesinsky, V. Kaplan, L. Zakova, V. Veverka, R. Hexnerova, R. J. Avino, J. Strakova, I. Selicharova, V. Vanek, D. W. Wright, C. J. Watson, J. P. Turkenburg, A. M. Brzozowski, J. Jiracek
Rational Steering Of Insulin Binding Specificity By Intra-Chain Chemical Crosslinking.
Sci Rep V. 6 19431 2016
PubMed-ID: 26792393  |  Reference-DOI: 10.1038/SREP19431

(-) Compounds

Molecule 1 - INSULIN
    Chains: A, C, E, G
    Engineered: YES
    Fragment: UNP RESIDUES 90-110
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SEQUENCE OCCURS NATURALLY
    Synthetic: YES
 
Molecule 2 - INSULIN
    Chains: B, D, F, H
    Engineered: YES
    Fragment: UNP RESIDUES 25-54
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: COVALENT CROSS-LINK BETWEEN MODIFIED B24 AND B29
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB  EF  
Biological Unit 2 (1x):   CD  GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1HIX3Mod. Amino Acid3-(1H-1,2,3-TRIAZOL-5-YL)-L-ALANINE
2NLE2Mod. Amino AcidNORLEUCINE
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1HIX2Mod. Amino Acid3-(1H-1,2,3-TRIAZOL-5-YL)-L-ALANINE
2NLE1Mod. Amino AcidNORLEUCINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1HIX1Mod. Amino Acid3-(1H-1,2,3-TRIAZOL-5-YL)-L-ALANINE
2NLE1Mod. Amino AcidNORLEUCINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:4 , HOH A:214 , HOH A:215 , GLU C:4 , SO4 C:101 , HOH C:207 , GLY E:1 , GLU E:4 , GLY G:1 , HOH G:102binding site for residue SO4 A 101
2AC2SOFTWARESO4 A:101 , GLY C:1 , ILE C:2 , VAL C:3 , GLU C:4 , HOH C:202 , HOH C:207 , HOH C:211 , TYR E:19 , HOH G:102binding site for residue SO4 C 101
3AC3SOFTWARETYR C:19 , HOH C:203 , HOH C:212 , HOH C:215 , GLY G:1 , ILE G:2 , VAL G:3 , GLU G:4binding site for residue SO4 C 102

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:6 -A:11
2A:7 -B:7
3A:20 -B:19
4C:6 -C:11
5C:7 -D:7
6C:20 -D:19
7E:6 -E:11
8E:7 -F:7
9E:20 -F:19
10G:6 -G:11
11G:7 -H:7
12G:20 -H:19

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BOQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BOQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BOQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5BOQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author hhhhhhh....hhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5boq A  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain B from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  5boq B  1 FVNQHLCGSHLVEALYLVCGERGfFYT 27
                                    10        20   |   
                                                  24-HIX


Chain C from PDB  Type:PROTEIN  Length:20
                                                   
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .hhhhhh....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                  5boq C  1 GIVEQCCTSICSLYQLENYC 20
                                    10        20


Chain D from PDB  Type:PROTEIN  Length:17
                                                
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                  5boq D  3 NQHLCGSHLVEALYLVC 19
                                    12       


Chain E from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author .hhhhhh....hhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5boq E  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain F from PDB  Type:PROTEIN  Length:29
                                                            
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                  5boq F  2 VNQHLCGSHLVEALYLVCGERGfFYTPkT 30
                                    11        21  |    | 
                                                 24-HIX| 
                                                      29-NLE


Chain G from PDB  Type:PROTEIN  Length:21
                                                    
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author .hhhhhh....hhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  5boq G  1 GIVEQCCTSICSLYQLENYCN 21
                                    10        20 


Chain H from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  5boq H  3 NQHLCGSHLVEALYLVCGERGfFYTPk 29
                                    12        22 |    |
                                                24-HIX|
                                                     29-NLE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BOQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BOQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BOQ)

(-) Gene Ontology  (74, 74)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        INS_HUMAN | P01308: 1a7f 1ai0 1aiy 1b9e 1ben 1efe 1ev3 1ev6 1evr 1fu2 1fub 1g7a 1g7b 1guj 1hiq 1his 1hit 1hls 1htv 1hui 1iog 1ioh 1j73 1jca 1jco 1jk8 1k3m 1kmf 1lkq 1lph 1mhi 1mhj 1mso 1os3 1os4 1q4v 1qiy 1qiz 1qj0 1rwe 1sf1 1sjt 1sju 1t0c 1t1k 1t1p 1t1q 1trz 1tyl 1tym 1uz9 1vkt 1w8p 1xda 1xgl 1xw7 1zeg 1zeh 1znj 2aiy 2c8q 2c8r 2ceu 2g54 2g56 2h67 2hh4 2hho 2hiu 2jmn 2jum 2juu 2juv 2jv1 2jzq 2k91 2k9r 2kjj 2kju 2kqp 2kqq 2kxk 2l1y 2l1z 2lgb 2lwz 2m1d 2m1e 2m2m 2m2n 2m2o 2m2p 2mli 2mpg 2mpi 2mvc 2mvd 2n2v 2n2w 2n2x 2oly 2olz 2om0 2om1 2omg 2omh 2omi 2omq 2qiu 2r34 2r35 2r36 2rn5 2vjz 2vk0 2w44 2wby 2wc0 2wru 2wrv 2wrw 2wrx 2ws0 2ws1 2ws4 2ws6 2ws7 3aiy 3bxq 3e7y 3e7z 3exx 3fq9 3hyd 3i3z 3i40 3ilg 3inc 3ir0 3jsd 3kq6 3p2x 3p33 3q6e 3rov 3tt8 3u4n 3utq 3uts 3utt 3v19 3v1g 3w11 3w12 3w13 3w7y 3w7z 3w80 3zi3 3zqr 3zs2 3zu1 4aiy 4ajx 4ajz 4ak0 4akj 4cxl 4cxn 4cy7 4efx 4eww 4ewx 4ewz 4ex0 4ex1 4exx 4ey1 4ey9 4eyd 4eyn 4eyp 4f0n 4f0o 4f1a 4f1b 4f1c 4f1d 4f1f 4f1g 4f4t 4f4v 4f51 4f8f 4fg3 4fka 4gbc 4gbi 4gbk 4gbl 4gbn 4iuz 4iyd 4iyf 4nib 4oga 4p65 4q5z 4rxw 4une 4ung 4unh 4wdi 4xc4 4y19 4y1a 4z76 4z77 4z78 5aiy 5bpo 5bqq 5bts 5c0d 5cjo 5cny 5co2 5co6 5co9 5e7w 5ems 5en9 5ena 5hpr 5hpu 5hqi 5hrq 5hyj 5mam 5mt3 5mt9 5udp

(-) Related Entries Specified in the PDB File

5bpo 5bqq