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(-) Description

Title :  CRYSTAL STRUCTURE OF FGFR1 (C488A, C584C) IN COMPLEX WITH 6-(7-((1-AMINOCYCLOPROPYL) METHOXY)-6-METHOXYQUINOLIN-4-YLOXY)-N-METHYL-1-NAPHTHAMIDE (E3810)
 
Authors :  C. D. Sohl, K. S. Anderson
Date :  04 Dec 14  (Deposition) - 15 Apr 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Receptor Tyrosine Kinase, Gatekeeper Mutation, Proto-Oncogene, Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. D. Sohl, M. R. Ryan, B. Luo, K. M. Frey, K. S. Anderson
Illuminating The Molecular Mechanisms Of Tyrosine Kinase Inhibitor Resistance For The Fgfr1 Gatekeeper Mutation: The Achilles' Heel Of Targeted Therapy.
Acs Chem. Biol. V. 10 1319 2015
PubMed-ID: 25686244  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00014

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1
    Chains: A, B
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 458-765
    Gene: BFGFR, CEK, FGFBR, FGFR1, FLG, FLT2, HBGFR
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-1, BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1, BFGFR, BFGF-R-1, FMS-LIKE TYROSINE KINASE 2, FLT-2, N-SAM, PROTO-ONCOGENE C- FGR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
13ZC1Ligand/Ion6-({7-[(1-AMINOCYCLOPROPYL)METHOXY]-6-METHOXYQUINOLIN-4-YL}OXY)-N-METHYLNAPHTHALENE-1-CARBOXAMIDE
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
13ZC-1Ligand/Ion6-({7-[(1-AMINOCYCLOPROPYL)METHOXY]-6-METHOXYQUINOLIN-4-YL}OXY)-N-METHYLNAPHTHALENE-1-CARBOXAMIDE
2SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
13ZC1Ligand/Ion6-({7-[(1-AMINOCYCLOPROPYL)METHOXY]-6-METHOXYQUINOLIN-4-YL}OXY)-N-METHYLNAPHTHALENE-1-CARBOXAMIDE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU B:484 , VAL B:492 , ALA B:512 , LYS B:514 , GLU B:531 , MET B:535 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , SER B:565 , LEU B:630 , ALA B:640 , ASP B:641 , PHE B:642 , HOH B:907BINDING SITE FOR RESIDUE 3ZC B 801
2AC2SOFTWAREARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:919BINDING SITE FOR RESIDUE SO4 B 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RWL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RWL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RWL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RWL)

(-) Exons   (0, 0)

(no "Exon" information available for 4RWL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhh.eeeeeeee..eeeeeee.........eeeeeee......hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4rwl A 465 LPEDPRWELPRDRLVLGKPLGEQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   474       484 ||    498       508       518       528       538       548       558       568       578||     600       610       620       630       640      |653       663       673       683       693       703       713       723       733       743       753       763  
                                               486|                                                                                     579|                                                    647|                                                                                                                  
                                                491                                                                                      592                                                     651                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhh.eeeeeeeee....eeeeeeee......eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rwl B 458 AGVSEYELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQ 764
                                   467       477       487       497   ||  510       520       530       540       550       560       570       593       603       613       623       633       643||     659       669       679       689       699       709       719       729       739       749       759     
                                                                     501|                                                                       579|                                                644|                                                                                                                 
                                                                      505                                                                        593                                                 651
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RWL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RWL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RWL)

(-) Gene Ontology  (99, 99)

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  4rwl
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  FGFR1_HUMAN | P11362
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f63 4f64 4f65 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4uwb 4uwc 4uwy 4v01 4v04 4v05 4wun 4zsa 5a46 5a4c 5am6 5am7 5b7v 5ew8 5flf 5uq0 5ur1 5vnd

(-) Related Entries Specified in the PDB File

4rwi 4rwj 4rwk