4AYD - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF A COMPLEX BETWEEN CCPS 6 AND 7 OF HUMAN COMPLEMENT FACTOR H AND NEISSERIA MENINGITIDIS FHBP VARIANT 1 R106A MUTANT

Authors :   S. Johnson, L. Tan, S. Van Der Veen, J. Caesar, E. Goicoechea De Jorg R. J. Everett, X. Bai, R. M. Exley, P. N. Ward, N. Ruivo, K. Trivedi, E. Cu R. Jones, L. Newham, D. Staunton, R. Borrow, M. Pickering, S. M. Lea, C.

Date :   20 Jun 12 (Deposition) - 07 Nov 12 (Release) - 25 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Immune System, Antigens, Vaccines (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Johnson, L. Tan, S. Van Der Veen, J. Caesar, E. Goicoechea De Jorge, R. J. Harding, X. Bai, R. M. Exley, P. N. Ward, N. Ruivo, K. Trivedi, E. Cumber, R. Jones, L. Newham, D. Staunton, R. Ufret-Vincenty, R. Borrow, M. Pickering, S. M. Lea, C. M. Tang
Design And Evaluation Of Meningococcal Vaccines Through Structure-Based Modification Of Host And Pathogen Molecules
Plos Pathog. V. 8 2981 2012
PubMed-ID: 23133374 | Reference-DOI: 10.1371/JOURNAL.PPAT.1002981

Molecule 1 - COMPLEMENT FACTOR H
	Chains	:	A, B, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-14B
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	CCPS 6 AND 7, RESIDUES 321-443
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	HIS402 POLYMORPHISM
	Synonym	:	H FACTOR 1

Molecule 2 - FACTOR H BINDING PROTEIN
	Chains	:	C, D, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-21A
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 73-320
	Organism Scientific	:	NEISSERIA MENINGITIDIS
	Organism Taxid	:	122586
	Strain	:	MC58

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP E:329 , HOH E:2007 , HOH E:2012	BINDING SITE FOR RESIDUE EDO E1444
2	AC2	SOFTWARE	ARG A:341 , TYR A:353 , HOH A:2023 , HOH A:2055 , SER D:286 , SER D:288 , SER D:302	BINDING SITE FOR RESIDUE EDO D1322
3	AC3	SOFTWARE	HIS E:337 , ARG E:341 , TYR E:353 , HOH E:2052 , SER F:286 , SER F:288 , SER F:302 , HOH F:2127	BINDING SITE FOR RESIDUE EDO F1322
4	AC4	SOFTWARE	HIS B:337 , ARG B:341 , TYR B:353 , HOH B:2040 , SER C:286 , SER C:288 , SER C:302 , GLU C:304 , HOH C:2144	BINDING SITE FOR RESIDUE EDO C1323

Asymmetric Unit

No.	Residues
1	A:325	-	A:374
2	A:357	-	A:385
3	A:389	-	A:431
4	A:416	-	A:442
5	B:325	-	B:374
6	B:357	-	B:385
7	B:389	-	B:431
8	B:416	-	B:442
9	E:325	-	E:374
10	E:357	-	E:385
11	E:389	-	E:431
12	E:416	-	E:442

Asymmetric Unit

No.	Residues
1	Phe A:345	-	Pro A:346
2	Ser A:380	-	Pro A:381
3	Ser A:437	-	Pro A:438
4	Phe B:345	-	Pro B:346
5	Ser B:380	-	Pro B:381
6	Ser B:437	-	Pro B:438
7	Gly C:95	-	Leu C:96
8	Tyr C:122	-	Gly C:123
9	Gly D:95	-	Leu D:96
10	Tyr D:122	-	Gly D:123
11	Phe E:345	-	Pro E:346
12	Ser E:380	-	Pro E:381
13	Ser E:437	-	Pro E:438
14	Gly F:95	-	Leu F:96
15	Tyr F:122	-	Gly F:123

Asymmetric Unit (4, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063648	C	325	Y	CFAH_HUMAN	Disease (AHUS1)	---	A/B/E	C	325	Y
2	UniProt	VAR_031980	Q	400	K	CFAH_HUMAN	Disease (AHUS1)	---	A/B/E	Q	400	K
3	UniProt	VAR_001979	Y	402	H	CFAH_HUMAN	Polymorphism	1061170	A/B/E	H	402	H
4	UniProt	VAR_031981	C	431	S	CFAH_HUMAN	Disease (CFHD)	---	A/B/E	C	431	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063648	C	325	Y	CFAH_HUMAN	Disease (AHUS1)	---	A	C	325	Y
2	UniProt	VAR_031980	Q	400	K	CFAH_HUMAN	Disease (AHUS1)	---	A	Q	400	K
3	UniProt	VAR_001979	Y	402	H	CFAH_HUMAN	Polymorphism	1061170	A	H	402	H
4	UniProt	VAR_031981	C	431	S	CFAH_HUMAN	Disease (CFHD)	---	A	C	431	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063648	C	325	Y	CFAH_HUMAN	Disease (AHUS1)	---	B	C	325	Y
2	UniProt	VAR_031980	Q	400	K	CFAH_HUMAN	Disease (AHUS1)	---	B	Q	400	K
3	UniProt	VAR_001979	Y	402	H	CFAH_HUMAN	Polymorphism	1061170	B	H	402	H
4	UniProt	VAR_031981	C	431	S	CFAH_HUMAN	Disease (CFHD)	---	B	C	431	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_063648	C	325	Y	CFAH_HUMAN	Disease (AHUS1)	---	E	C	325	Y
2	UniProt	VAR_031980	Q	400	K	CFAH_HUMAN	Disease (AHUS1)	---	E	Q	400	K
3	UniProt	VAR_001979	Y	402	H	CFAH_HUMAN	Polymorphism	1061170	E	H	402	H
4	UniProt	VAR_031981	C	431	S	CFAH_HUMAN	Disease (CFHD)	---	E	C	431	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	CFAH_HUMAN	19-82 83-143 144-207 208-264 265-322 387-444 446-507 515-566 567-625 628-686 689-746 751-805 809-866 868-928 929-986 987-1045 1046-1104 1107-1165 1194-1230	3	- - - - - A:387-443 B:387-443 E:387-443 - - - - - - - - - - - - -

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	CFAH_HUMAN	19-82 83-143 144-207 208-264 265-322 387-444 446-507 515-566 567-625 628-686 689-746 751-805 809-866 868-928 929-986 987-1045 1046-1104 1107-1165 1194-1230	1	- - - - - A:387-443 - - - - - - - - - - - - - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	CFAH_HUMAN	19-82 83-143 144-207 208-264 265-322 387-444 446-507 515-566 567-625 628-686 689-746 751-805 809-866 868-928 929-986 987-1045 1046-1104 1107-1165 1194-1230	1	- - - - - - B:387-443 - - - - - - - - - - - - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	CFAH_HUMAN	19-82 83-143 144-207 208-264 265-322 387-444 446-507 515-566 567-625 628-686 689-746 751-805 809-866 868-928 929-986 987-1045 1046-1104 1107-1165 1194-1230	1	- - - - - - - E:387-443 - - - - - - - - - - - - -

Asymmetric Unit (3, 7)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000367429	1a	ENSE00001444484	chr1:196621008-196621305	298	CFAH_HUMAN	1-20	20	0	-	-
1.2a	ENST00000367429	2a	ENSE00001134426	chr1:196642108-196642293	186	CFAH_HUMAN	20-82	63	0	-	-
1.3	ENST00000367429	3	ENSE00000791013	chr1:196642987-196643092	106	CFAH_HUMAN	82-117	36	0	-	-
1.4	ENST00000367429	4	ENSE00000791014	chr1:196645119-196645195	77	CFAH_HUMAN	117-143	27	0	-	-
1.5b	ENST00000367429	5b	ENSE00000469039	chr1:196646606-196646797	192	CFAH_HUMAN	143-207	65	0	-	-
1.5c	ENST00000367429	5c	ENSE00000791016	chr1:196648753-196648923	171	CFAH_HUMAN	207-264	58	0	-	-
1.6	ENST00000367429	6	ENSE00000469041	chr1:196654194-196654367	174	CFAH_HUMAN	264-322	59	1	A:321-322 - -	2 - -
1.7	ENST00000367429	7	ENSE00001769047	chr1:196658550-196658744	195	CFAH_HUMAN	322-387	66	3	A:322-387 B:324-387 E:323-387	66 64 65
1.8a	ENST00000367429	8a	ENSE00001597868	chr1:196659193-196659369	177	CFAH_HUMAN	387-446	60	3	A:387-443 B:387-443 (gaps) E:387-443	57 57 57
1.12	ENST00000367429	12	ENSE00000469044	chr1:196682865-196683047	183	CFAH_HUMAN	446-507	62	0	-	-
1.13	ENST00000367429	13	ENSE00000469045	chr1:196684723-196684899	177	CFAH_HUMAN	507-566	60	0	-	-
1.14	ENST00000367429	14	ENSE00000791022	chr1:196694251-196694427	177	CFAH_HUMAN	566-625	60	0	-	-
1.15	ENST00000367429	15	ENSE00000791023	chr1:196695600-196695782	183	CFAH_HUMAN	625-686	62	0	-	-
1.16	ENST00000367429	16	ENSE00000469048	chr1:196695891-196696070	180	CFAH_HUMAN	686-746	61	0	-	-
1.17	ENST00000367429	17	ENSE00000791025	chr1:196697476-196697652	177	CFAH_HUMAN	746-805	60	0	-	-
1.18a	ENST00000367429	18a	ENSE00000791026	chr1:196705954-196706136	183	CFAH_HUMAN	805-866	62	0	-	-
1.19	ENST00000367429	19	ENSE00000791027	chr1:196706605-196706790	186	CFAH_HUMAN	866-928	63	0	-	-
1.20a	ENST00000367429	20a	ENSE00000791028	chr1:196709749-196709922	174	CFAH_HUMAN	928-986	59	0	-	-
1.20d	ENST00000367429	20d	ENSE00000469053	chr1:196711005-196711181	177	CFAH_HUMAN	986-1045	60	0	-	-
1.21	ENST00000367429	21	ENSE00001622338	chr1:196712582-196712758	177	CFAH_HUMAN	1045-1104	60	0	-	-
1.22	ENST00000367429	22	ENSE00001719380	chr1:196714947-196715129	183	CFAH_HUMAN	1104-1165	62	0	-	-
1.23	ENST00000367429	23	ENSE00001931000	chr1:196716241-196716634	394	CFAH_HUMAN	1165-1231	67	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:123
 aligned with CFAH_HUMAN | P08603 from UniProtKB/Swiss-Prot  Length:1231

    Alignment length:123
                                   330       340       350       360       370       380       390       400       410       420       430       440   
           CFAH_HUMAN   321 TLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNYGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCI 443
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee.hhhhhhhhh......eeeeee...ee......eeeeeee..eee.....eeeee..............eee...eee..............eeeee..eee...... Sec.struct. author
                 SAPs(SNPs) ----Y--------------------------------------------------------------------------K-H----------------------------S------------ SAPs(SNPs)
                    PROSITE SU----------------------------------------------------------------SUSHI  PDB: A:387-443 UniProt: 387-444                    PROSITE
           Transcript 1 (1) 1.----------------------------------------------------------------Exon 1.8a  PDB: A:387-443 UniProt: 387-446 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) -Exon 1.7  PDB: A:322-387 UniProt: 322-387                         -------------------------------------------------------- Transcript 1 (2)
                 4ayd A 321 TLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCI 443
                                   330       340       350       360       370       380       390       400       410       420       430       440

Chain B from PDB  Type:PROTEIN  Length:117
 aligned with CFAH_HUMAN | P08603 from UniProtKB/Swiss-Prot  Length:1231

    Alignment length:120
                                   333       343       353       363       373       383       393       403       413       423       433       443
           CFAH_HUMAN   324 PCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNYGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCI 443
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eee.hhhhhhhhh......eeeeee...ee......eeeeeee..eee.....eeeee..............eee...eee.........---..eeeee..eee...... Sec.struct. author
                 SAPs(SNPs) -Y--------------------------------------------------------------------------K-H----------------------------S------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------SUSHI  PDB: B:387-443 UniProt: 387-444                    PROSITE
           Transcript 1 (1) ---------------------------------------------------------------Exon 1.8a  PDB: B:387-443 (gaps) UniProt: 387-446         Transcript 1 (1)
           Transcript 1 (2) Exon 1.7  PDB: B:324-387 UniProt: 322-387 [INCOMPLETE]          -------------------------------------------------------- Transcript 1 (2)
                 4ayd B 324 PCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYAL---QTTVTCMENGWSPTPRCI 443
                                   333       343       353       363       373       383       393       403       413        |-  |    433       443
                                                                                                                            422 426

Chain C from PDB  Type:PROTEIN  Length:238
 aligned with Q9JXV4_NEIMB | Q9JXV4 from UniProtKB/TrEMBL  Length:320

    Alignment length:247
                                                                                                                                                                                                                                                                              320  
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315    |  
         Q9JXV4_NEIMB    76 DIGAGLADALTAPLDHKDKGLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQ--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh...........ee.........eeeeee..eeeee....eehhhhh....eeeeeeeee..-----.eeeeeeeeeee...eeeeeeeeeeee.----..eeeeeeeeeeeeee....hhhh....eeeeeeeeee..eeeeeeeeeee....eeeeeee...hhhhh.eeeeeeeee.....eeeeeeeee..eeeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ayd C  76 DIGAGLADALTAPLDHKDKGLQSLTLDQSVAKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIE-----ITLESGEFQVYKQSHSALTAFQTEQIQD----GKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQEL 322
                                    85        95       105       115       125       135       145  |    155       165       175     |   -|      195       205       215       225       235       245       255       265       275       285       295       305       315       
                                                                                                  148   154                        181  186

Chain D from PDB  Type:PROTEIN  Length:243
 aligned with Q9JXV4_NEIMB | Q9JXV4 from UniProtKB/TrEMBL  Length:320

    Alignment length:243
                                                                                                                                                                                                                                                                           320 
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318 | 
         Q9JXV4_NEIMB    79 AGLADALTAPLDHKDKGLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQ-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...........ee.........eeeeee..eeeee....eehhhhh....eeeeeeeeeeee..eeeeeeeeeeeeee...eeeeeeeeeeee......eeeeeeeeeeeeeee....hhhh....eeeeeeeeee..eeeeeeeeeee....eeeeeee...hhhhh.eeeeeeeee.....eeeeeeeee..eeeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ayd D  79 AGLADALTAPLDHKDKGLQSLTLDQSVAKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQE 321
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318

Chain E from PDB  Type:PROTEIN  Length:121
 aligned with CFAH_HUMAN | P08603 from UniProtKB/Swiss-Prot  Length:1231

    Alignment length:121
                                   332       342       352       362       372       382       392       402       412       422       432       442 
           CFAH_HUMAN   323 KPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNYGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCI 443
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.hhhhhhhhh......eeeeee...ee......eeeeeee..eee.....eeeee..............eee...eee........hhhhh.eeeee..eee...... Sec.struct. author
                 SAPs(SNPs) --Y--------------------------------------------------------------------------K-H----------------------------S------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------SUSHI  PDB: E:387-443 UniProt: 387-444                    PROSITE
           Transcript 1 (1) ----------------------------------------------------------------Exon 1.8a  PDB: E:387-443 UniProt: 387-446 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) Exon 1.7  PDB: E:323-387 UniProt: 322-387 [INCOMPLETE]           -------------------------------------------------------- Transcript 1 (2)
                 4ayd E 323 KPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCI 443
                                   332       342       352       362       372       382       392       402       412       422       432       442

Chain F from PDB  Type:PROTEIN  Length:242
 aligned with Q9JXV4_NEIMB | Q9JXV4 from UniProtKB/TrEMBL  Length:320

    Alignment length:242
                                                                                                                                                                                                                                                                          320 
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319| 
         Q9JXV4_NEIMB    80 GLADALTAPLDHKDKGLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQ-   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...........ee........eeeeeee..eeeee....eehhhhh....eeeeeeeeeeee..eeeeeeeeeeeeee...eeeeeeeeeeee.......eeeeeeeeeeeeee....hhhh....eeeeeeeeee..eeeeeeeeeee....eeeeeee...hhhhh.eeeeeeeee.....eeeeeeeee..eeeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ayd F  80 GLADALTAPLDHKDKGLQSLTLDQSVAKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQE 321
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AYD)

(no "CATH Domain" information available for 4AYD)

(no "Pfam Domain" information available for 4AYD)

Asymmetric Unit(hide GO term definitions)

Chain A,B,E (CFAH_HUMAN | P08603)

molecular function
	GO:0043395	heparan sulfate proteoglycan binding	Interacting selectively and non-covalently with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit.
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006956	complement activation	Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
	GO:0006957	complement activation, alternative pathway	Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0030449	regulation of complement activation	Any process that modulates the frequency, rate or extent of complement activation.
cellular component
	GO:0072562	blood microparticle	A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain C,D,F (Q9JXV4_NEIMB | Q9JXV4)

cellular component
	GO:0016021		integral component of membrane		The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly C:95 - Leu C:96	[ RasMol ]
		Gly D:95 - Leu D:96	[ RasMol ]
		Gly F:95 - Leu F:96	[ RasMol ]
		Phe A:345 - Pro A:346	[ RasMol ]
		Phe B:345 - Pro B:346	[ RasMol ]
		Phe E:345 - Pro E:346	[ RasMol ]
		Ser A:380 - Pro A:381	[ RasMol ]
		Ser A:437 - Pro A:438	[ RasMol ]
		Ser B:380 - Pro B:381	[ RasMol ]
		Ser B:437 - Pro B:438	[ RasMol ]
		Ser E:380 - Pro E:381	[ RasMol ]
		Ser E:437 - Pro E:438	[ RasMol ]
		Tyr C:122 - Gly C:123	[ RasMol ]
		Tyr D:122 - Gly D:123	[ RasMol ]
		Tyr F:122 - Gly F:123	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
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Access by PDB/NDB ID
	4ayd
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		Orientation in Membranes	:	OPM
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		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	CFAH_HUMAN \| P08603
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	Q9JXV4_NEIMB \| Q9JXV4
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Access by Disease Identifier (MIM ID)
	235400
		Disease Information	:	OMIM
	609814
		Disease Information	:	OMIM

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	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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Access by UniProt ID/Accession number
	CFAH_HUMAN \| P08603
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q9JXV4_NEIMB \| Q9JXV4
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

1fhc	C3D AND HEPARIN BINDING COMPLEMENT FACTOR H DOMAINS SCR19-20
1haq	FOUR MODELS OF HUMAN FACTOR H DETERMINED BY SOLUTION SCATTERING CURVE-FITTING AND HOMOLOGY MODELLING
1hcc
1hfh	FACTOR H, 15TH AND 16TH C-MODULE PAIR (NMR, MINIMIZED AVERAGED STRUCTURE)
1hfi	FACTOR H, 15TH C-MODULE PAIR (NMR, MINIMIZED AVERAGED STRUCTURE)
1kov	HOMOLOGY MODEL OF HUMAN FACTOR H SCRS 6 AND 7
2g7i	STRUCTURE OF HUMAN COMPLEMENT FACTOR H CARBOXYL TERMINALDOMAINS 19-20: A BASIS FOR ATYPICAL HEMOLYTIC UREMICSYNDROME
2jgw	STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD AT RISK VARIENT (402H)
2jgx	STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD NOT AT RISK VARIENT (402Y)
2uwn	CRYSTAL STRUCTURE OF HUMAN COMPLEMENT FACTOR H, SCR DOMAINS 6-8 (H402 RISK VARIANT), IN COMPLEX WITH LIGAND.
2v8e	CRYSTAL STRUCTURE OF HUMAN COMPLEMENT FACTOR H, SCR DOMAINS 6-8 (H402 RISK VARIANT), IN COMPLEX WITH LIGAND.
2w80	STRUCTURE OF A COMPLEX BETWEEN NEISSERIA MENINGITIDIS FACTOR H BINDING PROTEIN AND CCPS 6-7 OF HUMAN COMPLEMENT FACTOR H
2w81	STRUCTURE OF A COMPLEX BETWEEN NEISSERIA MENINGITIDIS FACTOR H BINDING PROTEIN AND CCPS 6-7 OF HUMAN COMPLEMENT FACTOR H
2wii	COMPLEMENT C3B IN COMPLEX WITH FACTOR H DOMAINS 1-4
2xqw	STRUCTURE OF FACTOR H DOMAINS 19-20 IN COMPLEX WITH COMPLEMENT C3D
2y7s	STRUCTURE OF A DESIGNED MENINGOCOCCAL ANTIGEN (FACTOR H BINDING PROTEIN, MUTANT G1) INDUCING BROAD PROTECTIVE IMMUNITY
4aye	STRUCTURE OF A COMPLEX BETWEEN CCPS 6 AND 7 OF HUMAN COMPLEMENT FACTOR H AND NEISSERIA MENINGITIDIS FHBP VARIANT 1 E283AE304A MUTANT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (12, 12)

Cis Peptide Bonds (15, 15)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (4, 12)

PROSITE Motifs (1, 3)

Exons (3, 7)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File