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(-) Description

Title :  COMPLEMENT COMPONENTS FACTOR H CCP19-20 AND C3D IN COMPLEX
 
Authors :  H. P. Morgan, C. Q. Schmidt, M. Guariento, D. Gillespie, A. P. Herbert, H B. S. Blaum, D. Svergun, C. M. Johansson, D. Uhrin, P. N. Barlow, J. P. Ha
Date :  22 Sep 10  (Deposition) - 16 Feb 11  (Release) - 20 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  B,F  (1x)
Biol. Unit 2:  A,E  (1x)
Biol. Unit 3:  C,D  (1x)
Keywords :  C3D-Alpha-Alpha Barrel, Complement Component, Factor H, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. P. Morgan, C. Q. Schmidt, M. Guariento, B. S. Blaum, D. Gillespie, A. P. Herbert, D. Kavanagh, H. D. Mertens, D. I. Svergun, C. M. Johansson, D. Uhrin, P. N. Barlow, J. P. Hannan
Structural Basis For Engagement By Complement Factor H Of C3B On A Self Surface.
Nat. Struct. Mol. Biol. V. 18 463 2011
PubMed-ID: 21317894  |  Reference-DOI: 10.1038/NSMB.2018

(-) Compounds

Molecule 1 - COMPLEMENT C3
    ChainsA, B, C
    EngineeredYES
    Expression SystemPICHIA PASTORIS
    Expression System Taxid4922
    FragmentUNP RESIDUES 996-1303
    GeneC3, COMPLEMENT H FACTOR, CPAMD1
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC3 AND PZP-LIKE ALPHA-2-MACROGLOBULIN DOMAIN-CONTAINING PROTEIN 1, COMPLEMENT C3 BETA CHAIN, COMPLEMENT C3 ALPHA CHAIN, C3A ANAPHYLATOXIN, COMPLEMENT C3B ALPHA' CHAIN, COMPLEMENT C3C ALPHA' CHAIN FRAGMENT 1, COMPLEMENT C3DG FRAGMENT, COMPLEMENT C3G FRAGMENT, COMPLEMENT C3D FRAGMENT, COMPLEMENT C3F FRAGMENT, COMPLEMENT C3C ALPHA' CHAIN FRAGMENT 2
 
Molecule 2 - HF PROTEIN
    ChainsD, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 533-657
    GeneCOMPLEMENT COMPONENT C3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x) B   F
Biological Unit 2 (1x)A   E 
Biological Unit 3 (1x)  CD  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:84 , GLU A:127 , PRO A:130 , VAL A:131 , GLN A:134 , HOH A:580BINDING SITE FOR RESIDUE GOL A 311
2AC2SOFTWAREGLN B:159 , GLU B:160 , GLN B:205 , HOH B:359 , HOH B:516 , HOH B:524 , HOH B:853 , ARG D:1231BINDING SITE FOR RESIDUE GOL B 311
3AC3SOFTWARESER B:82 , TRP B:84 , GLU B:127 , PRO B:130 , VAL B:131 , GLN B:134 , HOH B:612 , HOH B:662 , HOH B:806BINDING SITE FOR RESIDUE GOL B 312
4AC4SOFTWAREGLY A:207 , ARG A:208 , LYS A:210 , TYR C:273BINDING SITE FOR RESIDUE GOL C 311
5AC5SOFTWARETRP C:84 , GLU C:127 , PRO C:130 , VAL C:131 , GLN C:134 , ILE C:137BINDING SITE FOR RESIDUE GOL C 312
6AC6SOFTWARETYR A:273 , GLU B:37 , LYS B:291 , HOH B:831 , LYS D:1202 , TYR D:1205BINDING SITE FOR RESIDUE GOL D 6
7AC7SOFTWAREHOH D:1049 , GLU D:1145 , LYS D:1162 , LEU D:1164 , TRP D:1219BINDING SITE FOR RESIDUE GOL D 8
8AC8SOFTWARETYR B:60 , THR B:61 , LEU B:64 , HOH B:331 , HOH E:591 , TRP E:1219BINDING SITE FOR RESIDUE GOL E 2

(-) SS Bonds  (15, 15)

Asymmetric Unit
No.Residues
1A:108 -A:165
2B:108 -B:165
3C:108 -C:165
4D:1109 -D:1152
5D:1138 -D:1163
6D:1167 -D:1218
7D:1201 -D:1228
8E:1109 -E:1152
9E:1138 -E:1163
10E:1167 -E:1218
11E:1201 -E:1228
12F:1109 -F:1152
13F:1138 -F:1163
14F:1167 -F:1218
15F:1201 -F:1228

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg F:1171 -Glu F:1172

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (28, 80)

Asymmetric Unit (28, 80)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_063655R1042LCO3_HUMANDisease (AHUS5)  ---A/B/CR49L
02UniProtVAR_063216A1094VCO3_HUMANDisease (AHUS5)121909584A/B/CA101V
03UniProtVAR_063217D1115NCO3_HUMANDisease (AHUS5)121909585A/B/CD122N
04UniProtVAR_063218C1158WCO3_HUMANDisease (AHUS5)  ---A/B/CC165W
05UniProtVAR_063219Q1161KCO3_HUMANDisease (AHUS5)  ---A/B/CQ168K
06UniProtVAR_022761D1216NCO3_HUMANUnclassified  ---A/B/CD223N
07UniProtVAR_019207G1224DCO3_HUMANPolymorphism11569534A/B/CG231D
08UniProtVAR_025874D1119GCFAH_HUMANDisease (CFHD)  ---D/E/FD1119G
09UniProtVAR_025875V1134GCFAH_HUMANDisease (AHUS1)  ---D/E/FV1134G
10UniProtVAR_025876Y1142DCFAH_HUMANDisease (AHUS1)  ---D/E/FY1142D
11UniProtVAR_043896Q1143ECFAH_HUMANPolymorphism34247141D/E/FQ1143E
12UniProtVAR_025877W1157RCFAH_HUMANDisease (AHUS1)  ---D/E/FW1157R
13UniProtVAR_025878C1163WCFAH_HUMANDisease (AHUS1)  ---D/E/FC1163W
14UniProtVAR_063650I1169LCFAH_HUMANDisease (AHUS1)  ---D/E/FI1169L
15UniProtVAR_063651W1183CCFAH_HUMANDisease (AHUS1)  ---D/FW1183C
16UniProtVAR_025879W1183LCFAH_HUMANDisease (AHUS1)  ---D/FW1183L
17UniProtVAR_025880W1183RCFAH_HUMANDisease (AHUS1)  ---D/FW1183R
18UniProtVAR_025881T1184RCFAH_HUMANDisease (CFHD)  ---D/FT1184R
19UniProtVAR_019407L1189RCFAH_HUMANDisease (AHUS1)  ---D/E/FL1189R
20UniProtVAR_019408S1191LCFAH_HUMANDisease (AHUS1)460897D/E/FS1191L
21UniProtVAR_025882G1194DCFAH_HUMANDisease (AHUS1)  ---D/E/FG1194D
22UniProtVAR_025883V1197ACFAH_HUMANDisease (AHUS1)460184D/E/FV1197A
23UniProtVAR_025884E1198ACFAH_HUMANDisease (AHUS1)  ---D/E/FE1198A
24UniProtVAR_031986F1199SCFAH_HUMANDisease (AHUS1)  ---D/E/FF1199S
25UniProtVAR_025885R1210CCFAH_HUMANDisease (ARMD4)  ---D/E/FR1210C
26UniProtVAR_025886R1215GCFAH_HUMANDisease (AHUS1)  ---D/E/FR1215G
27UniProtVAR_025887R1215QCFAH_HUMANDisease (CFHD)  ---D/E/FR1215Q
28UniProtVAR_025888P1226SCFAH_HUMANDisease (AHUS1)  ---D/E/FP1226S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (28, 28)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_063655R1042LCO3_HUMANDisease (AHUS5)  ---BR49L
02UniProtVAR_063216A1094VCO3_HUMANDisease (AHUS5)121909584BA101V
03UniProtVAR_063217D1115NCO3_HUMANDisease (AHUS5)121909585BD122N
04UniProtVAR_063218C1158WCO3_HUMANDisease (AHUS5)  ---BC165W
05UniProtVAR_063219Q1161KCO3_HUMANDisease (AHUS5)  ---BQ168K
06UniProtVAR_022761D1216NCO3_HUMANUnclassified  ---BD223N
07UniProtVAR_019207G1224DCO3_HUMANPolymorphism11569534BG231D
08UniProtVAR_025874D1119GCFAH_HUMANDisease (CFHD)  ---FD1119G
09UniProtVAR_025875V1134GCFAH_HUMANDisease (AHUS1)  ---FV1134G
10UniProtVAR_025876Y1142DCFAH_HUMANDisease (AHUS1)  ---FY1142D
11UniProtVAR_043896Q1143ECFAH_HUMANPolymorphism34247141FQ1143E
12UniProtVAR_025877W1157RCFAH_HUMANDisease (AHUS1)  ---FW1157R
13UniProtVAR_025878C1163WCFAH_HUMANDisease (AHUS1)  ---FC1163W
14UniProtVAR_063650I1169LCFAH_HUMANDisease (AHUS1)  ---FI1169L
15UniProtVAR_063651W1183CCFAH_HUMANDisease (AHUS1)  ---FW1183C
16UniProtVAR_025879W1183LCFAH_HUMANDisease (AHUS1)  ---FW1183L
17UniProtVAR_025880W1183RCFAH_HUMANDisease (AHUS1)  ---FW1183R
18UniProtVAR_025881T1184RCFAH_HUMANDisease (CFHD)  ---FT1184R
19UniProtVAR_019407L1189RCFAH_HUMANDisease (AHUS1)  ---FL1189R
20UniProtVAR_019408S1191LCFAH_HUMANDisease (AHUS1)460897FS1191L
21UniProtVAR_025882G1194DCFAH_HUMANDisease (AHUS1)  ---FG1194D
22UniProtVAR_025883V1197ACFAH_HUMANDisease (AHUS1)460184FV1197A
23UniProtVAR_025884E1198ACFAH_HUMANDisease (AHUS1)  ---FE1198A
24UniProtVAR_031986F1199SCFAH_HUMANDisease (AHUS1)  ---FF1199S
25UniProtVAR_025885R1210CCFAH_HUMANDisease (ARMD4)  ---FR1210C
26UniProtVAR_025886R1215GCFAH_HUMANDisease (AHUS1)  ---FR1215G
27UniProtVAR_025887R1215QCFAH_HUMANDisease (CFHD)  ---FR1215Q
28UniProtVAR_025888P1226SCFAH_HUMANDisease (AHUS1)  ---FP1226S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (24, 24)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_063655R1042LCO3_HUMANDisease (AHUS5)  ---AR49L
02UniProtVAR_063216A1094VCO3_HUMANDisease (AHUS5)121909584AA101V
03UniProtVAR_063217D1115NCO3_HUMANDisease (AHUS5)121909585AD122N
04UniProtVAR_063218C1158WCO3_HUMANDisease (AHUS5)  ---AC165W
05UniProtVAR_063219Q1161KCO3_HUMANDisease (AHUS5)  ---AQ168K
06UniProtVAR_022761D1216NCO3_HUMANUnclassified  ---AD223N
07UniProtVAR_019207G1224DCO3_HUMANPolymorphism11569534AG231D
08UniProtVAR_025874D1119GCFAH_HUMANDisease (CFHD)  ---ED1119G
09UniProtVAR_025875V1134GCFAH_HUMANDisease (AHUS1)  ---EV1134G
10UniProtVAR_025876Y1142DCFAH_HUMANDisease (AHUS1)  ---EY1142D
11UniProtVAR_043896Q1143ECFAH_HUMANPolymorphism34247141EQ1143E
12UniProtVAR_025877W1157RCFAH_HUMANDisease (AHUS1)  ---EW1157R
13UniProtVAR_025878C1163WCFAH_HUMANDisease (AHUS1)  ---EC1163W
14UniProtVAR_063650I1169LCFAH_HUMANDisease (AHUS1)  ---EI1169L
19UniProtVAR_019407L1189RCFAH_HUMANDisease (AHUS1)  ---EL1189R
20UniProtVAR_019408S1191LCFAH_HUMANDisease (AHUS1)460897ES1191L
21UniProtVAR_025882G1194DCFAH_HUMANDisease (AHUS1)  ---EG1194D
22UniProtVAR_025883V1197ACFAH_HUMANDisease (AHUS1)460184EV1197A
23UniProtVAR_025884E1198ACFAH_HUMANDisease (AHUS1)  ---EE1198A
24UniProtVAR_031986F1199SCFAH_HUMANDisease (AHUS1)  ---EF1199S
25UniProtVAR_025885R1210CCFAH_HUMANDisease (ARMD4)  ---ER1210C
26UniProtVAR_025886R1215GCFAH_HUMANDisease (AHUS1)  ---ER1215G
27UniProtVAR_025887R1215QCFAH_HUMANDisease (CFHD)  ---ER1215Q
28UniProtVAR_025888P1226SCFAH_HUMANDisease (AHUS1)  ---EP1226S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (28, 28)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_063655R1042LCO3_HUMANDisease (AHUS5)  ---CR49L
02UniProtVAR_063216A1094VCO3_HUMANDisease (AHUS5)121909584CA101V
03UniProtVAR_063217D1115NCO3_HUMANDisease (AHUS5)121909585CD122N
04UniProtVAR_063218C1158WCO3_HUMANDisease (AHUS5)  ---CC165W
05UniProtVAR_063219Q1161KCO3_HUMANDisease (AHUS5)  ---CQ168K
06UniProtVAR_022761D1216NCO3_HUMANUnclassified  ---CD223N
07UniProtVAR_019207G1224DCO3_HUMANPolymorphism11569534CG231D
08UniProtVAR_025874D1119GCFAH_HUMANDisease (CFHD)  ---DD1119G
09UniProtVAR_025875V1134GCFAH_HUMANDisease (AHUS1)  ---DV1134G
10UniProtVAR_025876Y1142DCFAH_HUMANDisease (AHUS1)  ---DY1142D
11UniProtVAR_043896Q1143ECFAH_HUMANPolymorphism34247141DQ1143E
12UniProtVAR_025877W1157RCFAH_HUMANDisease (AHUS1)  ---DW1157R
13UniProtVAR_025878C1163WCFAH_HUMANDisease (AHUS1)  ---DC1163W
14UniProtVAR_063650I1169LCFAH_HUMANDisease (AHUS1)  ---DI1169L
15UniProtVAR_063651W1183CCFAH_HUMANDisease (AHUS1)  ---DW1183C
16UniProtVAR_025879W1183LCFAH_HUMANDisease (AHUS1)  ---DW1183L
17UniProtVAR_025880W1183RCFAH_HUMANDisease (AHUS1)  ---DW1183R
18UniProtVAR_025881T1184RCFAH_HUMANDisease (CFHD)  ---DT1184R
19UniProtVAR_019407L1189RCFAH_HUMANDisease (AHUS1)  ---DL1189R
20UniProtVAR_019408S1191LCFAH_HUMANDisease (AHUS1)460897DS1191L
21UniProtVAR_025882G1194DCFAH_HUMANDisease (AHUS1)  ---DG1194D
22UniProtVAR_025883V1197ACFAH_HUMANDisease (AHUS1)460184DV1197A
23UniProtVAR_025884E1198ACFAH_HUMANDisease (AHUS1)  ---DE1198A
24UniProtVAR_031986F1199SCFAH_HUMANDisease (AHUS1)  ---DF1199S
25UniProtVAR_025885R1210CCFAH_HUMANDisease (ARMD4)  ---DR1210C
26UniProtVAR_025886R1215GCFAH_HUMANDisease (AHUS1)  ---DR1215G
27UniProtVAR_025887R1215QCFAH_HUMANDisease (CFHD)  ---DR1215Q
28UniProtVAR_025888P1226SCFAH_HUMANDisease (AHUS1)  ---DP1226S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 9)

Asymmetric Unit (2, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
 
 
1194-1230
 
 
  6-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
D:1107-1165
E:1107-1165
F:1107-1165
D:1194-1230
E:1194-1230
F:1194-1230
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015
 
 
  3A:14-22
B:14-22
C:14-22
Biological Unit 1 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
 
 
1194-1230
 
 
  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
F:1107-1165
-
-
F:1194-1230
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015
 
 
  1-
B:14-22
-
Biological Unit 2 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
 
 
1194-1230
 
 
  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
E:1107-1165
-
-
E:1194-1230
-
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015
 
 
  1A:14-22
-
-
Biological Unit 3 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
 
 
1194-1230
 
 
  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
D:1107-1165
-
-
D:1194-1230
-
-
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015
 
 
  1-
-
C:14-22

(-) Exons   (7, 21)

Asymmetric Unit (7, 21)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3aENST000002459073aENSE00001938285chr19:6720693-6720527167CO3_HUMAN1-25250--
1.4ENST000002459074ENSE00001053574chr19:6719414-6719222193CO3_HUMAN25-89650--
1.5ENST000002459075ENSE00000858140chr19:6718423-6718258166CO3_HUMAN90-145560--
1.6aENST000002459076aENSE00001053592chr19:6718175-671810571CO3_HUMAN145-168240--
1.7ENST000002459077ENSE00000858137chr19:6714457-671436395CO3_HUMAN169-200320--
1.8bENST000002459078bENSE00001053577chr19:6714259-671417783CO3_HUMAN200-228290--
1.9ENST000002459079ENSE00001053565chr19:6714093-671400391CO3_HUMAN228-258310--
1.11ENST0000024590711ENSE00001053527chr19:6713520-6713418103CO3_HUMAN258-292350--
1.12bENST0000024590712bENSE00000858133chr19:6713326-6713200127CO3_HUMAN293-335430--
1.13ENST0000024590713ENSE00001053519chr19:6712634-6712519116CO3_HUMAN335-373390--
1.14bENST0000024590714bENSE00001053582chr19:6712417-6712268150CO3_HUMAN374-423500--
1.15ENST0000024590715ENSE00000858130chr19:6711207-6710998210CO3_HUMAN424-493700--
1.16bENST0000024590716bENSE00001159750chr19:6710856-6710650207CO3_HUMAN494-562690--
1.17bENST0000024590717bENSE00000858128chr19:6709853-6709695159CO3_HUMAN563-615530--
1.18ENST0000024590718ENSE00000858127chr19:6707940-6707811130CO3_HUMAN616-659440--
1.19ENST0000024590719ENSE00001053520chr19:6707548-670747772CO3_HUMAN659-683250--
1.20ENST0000024590720ENSE00001053532chr19:6707284-6707087198CO3_HUMAN683-749670--
1.21cENST0000024590721cENSE00001053537chr19:6702590-6702482109CO3_HUMAN749-785370--
1.22ENST0000024590722ENSE00001053579chr19:6702223-670213886CO3_HUMAN785-814300--
1.23bENST0000024590723bENSE00001053525chr19:6697805-6697663143CO3_HUMAN814-861480--
1.23dENST0000024590723dENSE00000858122chr19:6697567-6697355213CO3_HUMAN862-932710--
1.24bENST0000024590724bENSE00000858121chr19:6696670-669660467CO3_HUMAN933-955230--
1.25ENST0000024590725ENSE00001053553chr19:6696476-669639087CO3_HUMAN955-984300--
1.26ENST0000024590726ENSE00000858119chr19:6694645-6694442204CO3_HUMAN984-1052693A:0-59
B:10-59
C:1-59
60
50
59
1.27ENST0000024590727ENSE00000858118chr19:6693498-669342376CO3_HUMAN1052-1077263A:59-84
B:59-84
C:59-84
26
26
26
1.28cENST0000024590728cENSE00000858117chr19:6693094-6692935160CO3_HUMAN1077-1130543A:84-137
B:84-137
C:84-137
54
54
54
1.29ENST0000024590729ENSE00000858116chr19:6690738-669064099CO3_HUMAN1131-1163333A:138-170
B:138-170
C:138-170
33
33
33
1.31aENST0000024590731aENSE00000858115chr19:6686913-6686757157CO3_HUMAN1164-1216533A:171-223
B:171-223
C:171-223
53
53
53
1.31dENST0000024590731dENSE00001504968chr19:6686298-6686135164CO3_HUMAN1216-1270553A:223-277
B:223-277 (gaps)
C:223-277
55
55
55
1.32ENST0000024590732ENSE00001159688chr19:6685157-6684999159CO3_HUMAN1271-1323533A:278-294
B:278-309 (gaps)
C:278-294
17
32
17
1.33ENST0000024590733ENSE00000858111chr19:6684845-668478660CO3_HUMAN1324-1343200--
1.34aENST0000024590734aENSE00001053551chr19:6684661-668457191CO3_HUMAN1344-1374310--
1.35aENST0000024590735aENSE00000858109chr19:6684450-668439952CO3_HUMAN1374-1391180--
1.36bENST0000024590736bENSE00000858108chr19:6682240-668215388CO3_HUMAN1391-1420300--
1.37ENST0000024590737ENSE00000858107chr19:6682041-668195290CO3_HUMAN1421-1450300--
1.38ENST0000024590738ENSE00000858106chr19:6680274-6680169106CO3_HUMAN1451-1486360--
1.40aENST0000024590740aENSE00000858105chr19:6679507-667941890CO3_HUMAN1486-1516310--
1.41aENST0000024590741aENSE00000858104chr19:6679219-667913684CO3_HUMAN1516-1544290--
1.42ENST0000024590742ENSE00000858103chr19:6678466-667838384CO3_HUMAN1544-1572290--
1.43ENST0000024590743ENSE00000858102chr19:6678298-6678163136CO3_HUMAN1572-1617460--
1.44cENST0000024590744cENSE00001159829chr19:6678034-6677846189CO3_HUMAN1617-1663470--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:295
 aligned with CO3_HUMAN | P01024 from UniProtKB/Swiss-Prot  Length:1663

    Alignment length:295
                                  1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282     
           CO3_HUMAN    993 DAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP 1287
               SCOP domains d3oxua_ A: automated matches                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.............hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------L---------------------------------------------------V--------------------N------------------------------------------W--K------------------------------------------------------N-------D--------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------ALPHA_2_M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.26  PDB: A:0-59 UniProt: 984-1052 [INCOMPLETE]       ------------------------Exon 1.28c  PDB: A:84-137 UniProt: 1077-1130          Exon 1.29  PDB: A:138-170        Exon 1.31a  PDB: A:171-223 UniProt: 1164-1216        ------------------------------------------------------Exon 1.32         Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------Exon 1.27  PDB: A:59-84   ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.31d  PDB: A:223-277 UniProt: 1216-1270          ----------------- Transcript 1 (2)
                3oxu A    0 EFRDAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP  294
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289     

Chain B from PDB  Type:PROTEIN  Length:295
 aligned with CO3_HUMAN | P01024 from UniProtKB/Swiss-Prot  Length:1663

    Alignment length:300
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302
           CO3_HUMAN   1003 LIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPS 1302
               SCOP domains d3oxub_ B: automated matches                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.---.....hhhhhhhhhhhhhhhhhhh......--........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------L---------------------------------------------------V--------------------N------------------------------------------W--K------------------------------------------------------N-------D------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----ALPHA_2_M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.26  PDB: B:10-59 UniProt: 984-1052         ------------------------Exon 1.28c  PDB: B:84-137 UniProt: 1077-1130          Exon 1.29  PDB: B:138-170        Exon 1.31a  PDB: B:171-223 UniProt: 1164-1216        ------------------------------------------------------Exon 1.32  PDB: B:278-309 (gaps) Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------Exon 1.27  PDB: B:59-84   ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.31d  PDB: B:223-277 (gaps) UniProt: 1216-1270   -------------------------------- Transcript 1 (2)
                3oxu B   10 LIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQ---GGGYGSTQATFMVFQALAQYQKDAPDHQEL--DVSLQLPS  309
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259      |  -|      279       289       299  |    309
                                                                                                                                                                                                                                                                                          266 270                          299  |       
                                                                                                                                                                                                                                                                                                                              302       

Chain C from PDB  Type:PROTEIN  Length:294
 aligned with CO3_HUMAN | P01024 from UniProtKB/Swiss-Prot  Length:1663

    Alignment length:294
                                  1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273      1283    
           CO3_HUMAN    994 AVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP 1287
               SCOP domains d3oxuc_ C: automated matches                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----Thiol-ester_cl-3oxuC04 C:6-36  ---------------------A2M_comp-3oxuC01 C:58-291                                                                                                                                                                                                                 --- Pfam domains (1)
           Pfam domains (2) -----Thiol-ester_cl-3oxuC05 C:6-36  ---------------------A2M_comp-3oxuC02 C:58-291                                                                                                                                                                                                                 --- Pfam domains (2)
           Pfam domains (3) -----Thiol-ester_cl-3oxuC06 C:6-36  ---------------------A2M_comp-3oxuC03 C:58-291                                                                                                                                                                                                                 --- Pfam domains (3)
         Sec.struct. author ......hhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------L---------------------------------------------------V--------------------N------------------------------------------W--K------------------------------------------------------N-------D--------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------ALPHA_2_M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.26  PDB: C:1-59 UniProt: 984-1052 [INCOMPLETE]      ------------------------Exon 1.28c  PDB: C:84-137 UniProt: 1077-1130          Exon 1.29  PDB: C:138-170        Exon 1.31a  PDB: C:171-223 UniProt: 1164-1216        ------------------------------------------------------Exon 1.32         Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------Exon 1.27  PDB: C:59-84   ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.31d  PDB: C:223-277 UniProt: 1216-1270          ----------------- Transcript 1 (2)
                3oxu C    1 FRDAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP  294
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290    

Chain D from PDB  Type:PROTEIN  Length:125
 aligned with CFAH_HUMAN | P08603 from UniProtKB/Swiss-Prot  Length:1231

    Alignment length:125
                                  1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226     
          CFAH_HUMAN   1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR 1231
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee............eeeeee....eee...eeeee..ee....eee..ee.hhhhhhhhheee........ee....eeeeee....ee.......eee..........ee.. Sec.struct. author
             SAPs(SNPs) (1) ------------G--------------G-------DE-------------R-----W-----L-------------CR----R-L--D--AAS----------C----G----------S----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------L-------------------------------Q---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------------------R------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE SUSHI  PDB: D:1107-1165 UniProt: 1107-1165                 ----------------------------SUSHI  PDB: D:1194-1230              - PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                3oxu D 1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR 1231
                                  1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226     

Chain D from PDB  Type:PROTEIN  Length:125
 aligned with Q14006_HUMAN | Q14006 from UniProtKB/TrEMBL  Length:657

    Alignment length:125
                                   542       552       562       572       582       592       602       612       622       632       642       652     
        Q14006_HUMAN    533 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR  657
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee............eeeeee....eee...eeeee..ee....eee..ee.hhhhhhhhheee........ee....eeeeee....ee.......eee..........ee.. Sec.struct. author
             SAPs(SNPs) (1) ------------G--------------G-------DE-------------R-----W-----L-------------CR----R-L--D--AAS----------C----G----------S----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------L-------------------------------Q---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------------------R------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                3oxu D 1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR 1231
                                  1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226     

Chain E from PDB  Type:PROTEIN  Length:121
 aligned with CFAH_HUMAN | P08603 from UniProtKB/Swiss-Prot  Length:1231

    Alignment length:124
                                  1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226    
          CFAH_HUMAN   1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 1230
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee............eeeeee....eee...eeeee..ee....eee..ee.hhhhhhhh.eee.---....ee....eeeeee....ee.......eee..........ee. Sec.struct. author
             SAPs(SNPs) (1) ------------G--------------G-------DE-------------R-----W-----L-------------------R-L--D--AAS----------C----G----------S---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------Q--------------- SAPs(SNPs) (2)
                    PROSITE SUSHI  PDB: E:1107-1165 UniProt: 1107-1165                 ----------------------------SUSHI  PDB: E:1194-1230               PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                3oxu E 1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALR---KQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 1230
                                  1116      1126      1136      1146      1156      1166      1176     |1186      1196      1206      1216      1226    
                                                                                                    1182   |                                            
                                                                                                        1186                                            

Chain E from PDB  Type:PROTEIN  Length:121
 aligned with Q14006_HUMAN | Q14006 from UniProtKB/TrEMBL  Length:657

    Alignment length:124
                                   542       552       562       572       582       592       602       612       622       632       642       652    
        Q14006_HUMAN    533 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK  656
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee............eeeeee....eee...eeeee..ee....eee..ee.hhhhhhhh.eee.---....ee....eeeeee....ee.......eee..........ee. Sec.struct. author
             SAPs(SNPs) (1) ------------G--------------G-------DE-------------R-----W-----L-------------------R-L--D--AAS----------C----G----------S---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------Q--------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                3oxu E 1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALR---KQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 1230
                                  1116      1126      1136      1146      1156      1166      1176     |1186      1196      1206      1216      1226    
                                                                                                    1182   |                                            
                                                                                                        1186                                            

Chain F from PDB  Type:PROTEIN  Length:122
 aligned with CFAH_HUMAN | P08603 from UniProtKB/Swiss-Prot  Length:1231

    Alignment length:125
                                  1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226     
          CFAH_HUMAN   1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR 1231
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------Sushi-3oxuF01 F:116   7-1228                                  --- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------Sushi-3oxuF02 F:116   7-1228                                  --- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------Sushi-3oxuF03 F:116   7-1228                                  --- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------Sushi-3oxuF04 F:116   7-1228                                  --- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------Sushi-3oxuF05 F:116   7-1228                                  --- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------Sushi-3oxuF06 F:116   7-1228                                  --- Pfam domains (6)
         Sec.struct. author ...........eee............eeeeee....eee...eeeee..ee....eee..ee...hhhhhh.eee....---.ee....eeeeee...eee.......eee..........eee. Sec.struct. author
             SAPs(SNPs) (1) ------------G--------------G-------DE-------------R-----W-----L-------------CR----R-L--D--AAS----------C----G----------S----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------L-------------------------------Q---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------------------R------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE SUSHI  PDB: F:1107-1165 UniProt: 1107-1165                 ----------------------------SUSHI  PDB: F:1194-1230              - PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                3oxu F 1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTA---LYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR 1231
                                  1116      1126      1136      1146      1156      1166      1176        |-  |   1196      1206      1216      1226     
                                                                                                       1185   |                                          
                                                                                                           1189                                          

Chain F from PDB  Type:PROTEIN  Length:122
 aligned with Q14006_HUMAN | Q14006 from UniProtKB/TrEMBL  Length:657

    Alignment length:125
                                   542       552       562       572       582       592       602       612       622       632       642       652     
        Q14006_HUMAN    533 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR  657
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------Sushi-3oxuF01 F:116   7-1228                                  --- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------Sushi-3oxuF02 F:116   7-1228                                  --- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------Sushi-3oxuF03 F:116   7-1228                                  --- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------Sushi-3oxuF04 F:116   7-1228                                  --- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------Sushi-3oxuF05 F:116   7-1228                                  --- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------Sushi-3oxuF06 F:116   7-1228                                  --- Pfam domains (6)
         Sec.struct. author ...........eee............eeeeee....eee...eeeee..ee....eee..ee...hhhhhh.eee....---.ee....eeeeee...eee.......eee..........eee. Sec.struct. author
             SAPs(SNPs) (1) ------------G--------------G-------DE-------------R-----W-----L-------------CR----R-L--D--AAS----------C----G----------S----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------L-------------------------------Q---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------------------R------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                3oxu F 1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTA---LYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR 1231
                                  1116      1126      1136      1146      1156      1166      1176        |-  |   1196      1206      1216      1226     
                                                                                                       1185   |                                          
                                                                                                           1189                                          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OXU)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: 6_Hairpin (120)
(-)
Family: Sushi (50)
2aSushi-3oxuF01F:1167-1228
2bSushi-3oxuF02F:1167-1228
2cSushi-3oxuF03F:1167-1228
2dSushi-3oxuF04F:1167-1228
2eSushi-3oxuF05F:1167-1228
2fSushi-3oxuF06F:1167-1228

(-) Gene Ontology  (49, 59)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (CO3_HUMAN | P01024)
molecular function
    GO:0031715    C5L2 anaphylatoxin chemotactic receptor binding    Interacting selectively and non-covalently with a C5L2 anaphylatoxin chemotactic receptor.
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
    GO:0004866    endopeptidase inhibitor activity    Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006957    complement activation, alternative pathway    Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:0045745    positive regulation of G-protein coupled receptor protein signaling pathway    Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity.
    GO:0001970    positive regulation of activation of membrane attack complex    Any process that activates, maintains or increases the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:2000427    positive regulation of apoptotic cell clearance    Any process that activates or increases the frequency, rate or extent of apoptotic cell clearance.
    GO:0048639    positive regulation of developmental growth    Any process that activates, maintains or increases the rate of developmental growth.
    GO:0010828    positive regulation of glucose transport    Any process that increases the frequency, rate or extent of glucose transport. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0010884    positive regulation of lipid storage    Any process that increases the rate, frequency or extent of lipid storage. Lipid storage is the accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.
    GO:0050766    positive regulation of phagocytosis    Any process that activates or increases the frequency, rate or extent of phagocytosis.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0001798    positive regulation of type IIa hypersensitivity    Any process that activates or increases the frequency, rate or extent of type IIa hypersensitivity, a type of inflammatory response.
    GO:0010575    positive regulation of vascular endothelial growth factor production    Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0010866    regulation of triglyceride biosynthetic process    Any process that modulates the rate, frequency, or extent of triglyceride biosynthesis. Triglyceride biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triglyceride, any triester of glycerol.
    GO:0032355    response to estradiol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
    GO:0043627    response to estrogen    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics.
    GO:0051384    response to glucocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0032026    response to magnesium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus.
    GO:0032570    response to progesterone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0002507    tolerance induction    A process that directly activates any of the steps required for tolerance, a physiologic state in which the immune system does not react destructively against the components of an organism that harbors it or against antigens that are introduced to it.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain D,E,F   (Q14006_HUMAN | Q14006)

Chain D,E,F   (CFAH_HUMAN | P08603)
molecular function
    GO:0043395    heparan sulfate proteoglycan binding    Interacting selectively and non-covalently with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit.
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006957    complement activation, alternative pathway    Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CFAH_HUMAN | P086031fhc 1haq 1hcc 1hfh 1hfi 1kov 2bzm 2g7i 2ic4 2jgw 2jgx 2kms 2qfg 2qfh 2rlp 2rlq 2uwn 2v8e 2w80 2w81 2wii 2xqw 3gau 3gav 3gaw 3kxv 3kzj 3r62 3rj3 3sw0 4ayd 4aye 4ayi 4aym 4b2r 4b2s 4j38 4k12 4ont 4zh1 5o32 5o35
        CO3_HUMAN | P010241c3d 1ghq 1w2s 2a73 2a74 2gox 2i07 2ice 2icf 2noj 2qki 2wii 2win 2wy7 2wy8 2xqw 2xwb 2xwj 3d5r 3d5s 3g6j 3l3o 3l5n 3nms 3oed 3ohx 3rj3 3t4a 4hw5 4hwj 4i6o 4m76 4ont 4zh1 5fo7 5fo8 5fo9 5foa 5fob 5m6w 5o32 5o35

(-) Related Entries Specified in the PDB File

1c3d MONOMER OF COMPLEMENT COMPONENT C3.
2g7i MONOMER OF COMPLEMENT FACTOR H.