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Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Title :   SOLUTION STRUCTURE OF HUMAN COMPLEMENT FACTOR H IN 250 MM NACL BUFFER

Authors :   A. I. Okemefuna, R. Nan, J. Gor, S. J. Perkins

Date :   18 Feb 09 (Deposition) - 09 Jun 09 (Release) - 27 Jul 11 (Revision)

Method :   SOLUTION SCATTERING

Resolution :   NOT APPLICABLE

Chains :   Asym. Unit : A  (8x)
Biol. Unit 1: A  (1x)

Keywords :   X-Ray Solution Scattering, Complement Factor H, Scr Domain, Age- Related Macular Degeneration, Complement Alternate Pathway, Disease Mutation, Glycoprotein, Immune Response, Innate Immunity, Secreted, Sushi, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. I. Okemefuna, R. Nan, J. Gor, S. J. Perkins
Electrostatic Interactions Contribute To The Folded-Back Conformation Of Wild Type Human Factor H.
J. Mol. Biol. V. 391 98 2009
PubMed-ID: 19505476 | Reference-DOI: 10.1016/J.JMB.2009.06.010

Molecule 1 - COMPLEMENT FACTOR H
	Chains	:	A
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	PURIFIED FROM POOLED PLASMA
	Synonym	:	H FACTOR 1

		1
Asymmetric Unit (8x)	:	A
Biological Unit 1 (1x)	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3GAW)

(no "Site" information available for 3GAW)

(no "SS Bond" information available for 3GAW)

(no "Cis Peptide Bond" information available for 3GAW)

Asymmetric Unit (57, 57)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_023836	V	62	I	CFAH_HUMAN	Polymorphism	800292	A	V	62	I
02	UniProt	VAR_025864	R	78	G	CFAH_HUMAN	Disease (AHUS1)	---	A	R	78	G
03	UniProt	VAR_031978	R	127	L	CFAH_HUMAN	Disease (CFHD)	---	A	R	127	L
04	UniProt	VAR_063648	C	325	Y	CFAH_HUMAN	Disease (AHUS1)	---	A	C	325	Y
05	UniProt	VAR_031980	Q	400	K	CFAH_HUMAN	Disease (AHUS1)	---	A	Q	400	K
06	UniProt	VAR_001979	Y	402	H	CFAH_HUMAN	Polymorphism	1061170	A	H	402	H
07	UniProt	VAR_031981	C	431	S	CFAH_HUMAN	Disease (CFHD)	---	A	C	431	S
08	UniProt	VAR_043892	T	493	R	CFAH_HUMAN	Polymorphism	1061171	A	T	493	R
09	UniProt	VAR_019405	C	536	R	CFAH_HUMAN	Disease (CFHD)	---	A	C	536	R
10	UniProt	VAR_025092	I	551	T	CFAH_HUMAN	Polymorphism	35453854	A	I	551	T
11	UniProt	VAR_043893	R	567	G	CFAH_HUMAN	Unclassified	---	A	R	567	G
12	UniProt	VAR_063649	V	609	I	CFAH_HUMAN	Disease (AHUS1)	---	A	V	609	I
13	UniProt	VAR_025865	C	630	W	CFAH_HUMAN	Disease (AHUS1)	---	A	C	630	W
14	UniProt	VAR_031982	C	673	S	CFAH_HUMAN	Disease (CFHD)	---	A	C	673	S
15	UniProt	VAR_031983	C	673	Y	CFAH_HUMAN	Disease (AHUS1)	---	A	C	673	Y
16	UniProt	VAR_025866	E	850	K	CFAH_HUMAN	Disease (AHUS1)	---	A	E	850	K
17	UniProt	VAR_025093	S	890	I	CFAH_HUMAN	Polymorphism	515299	A	S	890	I
18	UniProt	VAR_031984	H	893	R	CFAH_HUMAN	Disease (AHUS1)	---	A	H	893	R
19	UniProt	VAR_031985	C	915	S	CFAH_HUMAN	Disease (AHUS1)	---	A	C	915	S
20	UniProt	VAR_020261	E	936	D	CFAH_HUMAN	Polymorphism	1065489	A	E	936	D
21	UniProt	VAR_025867	Q	950	H	CFAH_HUMAN	Disease (AHUS1)	149474608	A	Q	950	H
22	UniProt	VAR_025868	Y	951	H	CFAH_HUMAN	Disease (AHUS1)	---	A	Y	951	H
23	UniProt	VAR_025869	T	956	M	CFAH_HUMAN	Disease (AHUS1)	145975787	A	T	956	M
24	UniProt	VAR_019406	C	959	Y	CFAH_HUMAN	Disease (CFHD)	---	A	C	959	Y
25	UniProt	VAR_025870	W	978	C	CFAH_HUMAN	Disease (AHUS1)	---	A	W	978	C
26	UniProt	VAR_055683	N	997	T	CFAH_HUMAN	Polymorphism	17575212	A	N	997	T
27	UniProt	VAR_025094	V	1007	I	CFAH_HUMAN	Polymorphism	---	A	V	1007	I
28	UniProt	VAR_043894	V	1007	L	CFAH_HUMAN	Polymorphism	534399	A	V	1007	L
29	UniProt	VAR_055684	A	1010	T	CFAH_HUMAN	Polymorphism	11539862	A	A	1010	T
30	UniProt	VAR_025095	T	1017	I	CFAH_HUMAN	Polymorphism	34362004	A	T	1017	I
31	UniProt	VAR_025871	Y	1021	F	CFAH_HUMAN	Disease (AHUS1)	---	A	Y	1021	F
32	UniProt	VAR_025872	C	1043	R	CFAH_HUMAN	Disease (AHUS1)	---	A	C	1043	R
33	UniProt	VAR_025096	N	1050	Y	CFAH_HUMAN	Polymorphism	35274867	A	N	1050	Y
34	UniProt	VAR_025097	I	1059	T	CFAH_HUMAN	Polymorphism	35343172	A	I	1059	T
35	UniProt	VAR_025873	Q	1076	E	CFAH_HUMAN	Disease (CFHD)	---	A	Q	1076	E
36	UniProt	VAR_043895	R	1078	S	CFAH_HUMAN	Unclassified	---	A	R	1078	S
37	UniProt	VAR_025874	D	1119	G	CFAH_HUMAN	Disease (CFHD)	---	A	D	1119	G
38	UniProt	VAR_025875	V	1134	G	CFAH_HUMAN	Disease (AHUS1)	---	A	V	1134	G
39	UniProt	VAR_025876	Y	1142	D	CFAH_HUMAN	Disease (AHUS1)	---	A	Y	1142	D
40	UniProt	VAR_043896	Q	1143	E	CFAH_HUMAN	Polymorphism	34247141	A	Q	1143	E
41	UniProt	VAR_025877	W	1157	R	CFAH_HUMAN	Disease (AHUS1)	---	A	W	1157	R
42	UniProt	VAR_025878	C	1163	W	CFAH_HUMAN	Disease (AHUS1)	---	A	C	1163	W
43	UniProt	VAR_063650	I	1169	L	CFAH_HUMAN	Disease (AHUS1)	---	A	I	1169	L
44	UniProt	VAR_063651	W	1183	C	CFAH_HUMAN	Disease (AHUS1)	---	A	W	1183	C
45	UniProt	VAR_025879	W	1183	L	CFAH_HUMAN	Disease (AHUS1)	---	A	W	1183	L
46	UniProt	VAR_025880	W	1183	R	CFAH_HUMAN	Disease (AHUS1)	---	A	W	1183	R
47	UniProt	VAR_025881	T	1184	R	CFAH_HUMAN	Disease (CFHD)	---	A	T	1184	R
48	UniProt	VAR_019407	L	1189	R	CFAH_HUMAN	Disease (AHUS1)	---	A	L	1189	R
49	UniProt	VAR_019408	S	1191	L	CFAH_HUMAN	Disease (AHUS1)	460897	A	S	1191	L
50	UniProt	VAR_025882	G	1194	D	CFAH_HUMAN	Disease (AHUS1)	---	A	G	1194	D
51	UniProt	VAR_025883	V	1197	A	CFAH_HUMAN	Disease (AHUS1)	460184	A	V	1197	A
52	UniProt	VAR_025884	E	1198	A	CFAH_HUMAN	Disease (AHUS1)	---	A	E	1198	A
53	UniProt	VAR_031986	F	1199	S	CFAH_HUMAN	Disease (AHUS1)	---	A	F	1199	S
54	UniProt	VAR_025885	R	1210	C	CFAH_HUMAN	Disease (ARMD4)	---	A	R	1210	C
55	UniProt	VAR_025886	R	1215	G	CFAH_HUMAN	Disease (AHUS1)	---	A	R	1215	G
56	UniProt	VAR_025887	R	1215	Q	CFAH_HUMAN	Disease (CFHD)	---	A	R	1215	Q
57	UniProt	VAR_025888	P	1226	S	CFAH_HUMAN	Disease (AHUS1)	---	A	P	1226	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (57, 57)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_023836	V	62	I	CFAH_HUMAN	Polymorphism	800292	A	V	62	I
02	UniProt	VAR_025864	R	78	G	CFAH_HUMAN	Disease (AHUS1)	---	A	R	78	G
03	UniProt	VAR_031978	R	127	L	CFAH_HUMAN	Disease (CFHD)	---	A	R	127	L
04	UniProt	VAR_063648	C	325	Y	CFAH_HUMAN	Disease (AHUS1)	---	A	C	325	Y
05	UniProt	VAR_031980	Q	400	K	CFAH_HUMAN	Disease (AHUS1)	---	A	Q	400	K
06	UniProt	VAR_001979	Y	402	H	CFAH_HUMAN	Polymorphism	1061170	A	H	402	H
07	UniProt	VAR_031981	C	431	S	CFAH_HUMAN	Disease (CFHD)	---	A	C	431	S
08	UniProt	VAR_043892	T	493	R	CFAH_HUMAN	Polymorphism	1061171	A	T	493	R
09	UniProt	VAR_019405	C	536	R	CFAH_HUMAN	Disease (CFHD)	---	A	C	536	R
10	UniProt	VAR_025092	I	551	T	CFAH_HUMAN	Polymorphism	35453854	A	I	551	T
11	UniProt	VAR_043893	R	567	G	CFAH_HUMAN	Unclassified	---	A	R	567	G
12	UniProt	VAR_063649	V	609	I	CFAH_HUMAN	Disease (AHUS1)	---	A	V	609	I
13	UniProt	VAR_025865	C	630	W	CFAH_HUMAN	Disease (AHUS1)	---	A	C	630	W
14	UniProt	VAR_031982	C	673	S	CFAH_HUMAN	Disease (CFHD)	---	A	C	673	S
15	UniProt	VAR_031983	C	673	Y	CFAH_HUMAN	Disease (AHUS1)	---	A	C	673	Y
16	UniProt	VAR_025866	E	850	K	CFAH_HUMAN	Disease (AHUS1)	---	A	E	850	K
17	UniProt	VAR_025093	S	890	I	CFAH_HUMAN	Polymorphism	515299	A	S	890	I
18	UniProt	VAR_031984	H	893	R	CFAH_HUMAN	Disease (AHUS1)	---	A	H	893	R
19	UniProt	VAR_031985	C	915	S	CFAH_HUMAN	Disease (AHUS1)	---	A	C	915	S
20	UniProt	VAR_020261	E	936	D	CFAH_HUMAN	Polymorphism	1065489	A	E	936	D
21	UniProt	VAR_025867	Q	950	H	CFAH_HUMAN	Disease (AHUS1)	149474608	A	Q	950	H
22	UniProt	VAR_025868	Y	951	H	CFAH_HUMAN	Disease (AHUS1)	---	A	Y	951	H
23	UniProt	VAR_025869	T	956	M	CFAH_HUMAN	Disease (AHUS1)	145975787	A	T	956	M
24	UniProt	VAR_019406	C	959	Y	CFAH_HUMAN	Disease (CFHD)	---	A	C	959	Y
25	UniProt	VAR_025870	W	978	C	CFAH_HUMAN	Disease (AHUS1)	---	A	W	978	C
26	UniProt	VAR_055683	N	997	T	CFAH_HUMAN	Polymorphism	17575212	A	N	997	T
27	UniProt	VAR_025094	V	1007	I	CFAH_HUMAN	Polymorphism	---	A	V	1007	I
28	UniProt	VAR_043894	V	1007	L	CFAH_HUMAN	Polymorphism	534399	A	V	1007	L
29	UniProt	VAR_055684	A	1010	T	CFAH_HUMAN	Polymorphism	11539862	A	A	1010	T
30	UniProt	VAR_025095	T	1017	I	CFAH_HUMAN	Polymorphism	34362004	A	T	1017	I
31	UniProt	VAR_025871	Y	1021	F	CFAH_HUMAN	Disease (AHUS1)	---	A	Y	1021	F
32	UniProt	VAR_025872	C	1043	R	CFAH_HUMAN	Disease (AHUS1)	---	A	C	1043	R
33	UniProt	VAR_025096	N	1050	Y	CFAH_HUMAN	Polymorphism	35274867	A	N	1050	Y
34	UniProt	VAR_025097	I	1059	T	CFAH_HUMAN	Polymorphism	35343172	A	I	1059	T
35	UniProt	VAR_025873	Q	1076	E	CFAH_HUMAN	Disease (CFHD)	---	A	Q	1076	E
36	UniProt	VAR_043895	R	1078	S	CFAH_HUMAN	Unclassified	---	A	R	1078	S
37	UniProt	VAR_025874	D	1119	G	CFAH_HUMAN	Disease (CFHD)	---	A	D	1119	G
38	UniProt	VAR_025875	V	1134	G	CFAH_HUMAN	Disease (AHUS1)	---	A	V	1134	G
39	UniProt	VAR_025876	Y	1142	D	CFAH_HUMAN	Disease (AHUS1)	---	A	Y	1142	D
40	UniProt	VAR_043896	Q	1143	E	CFAH_HUMAN	Polymorphism	34247141	A	Q	1143	E
41	UniProt	VAR_025877	W	1157	R	CFAH_HUMAN	Disease (AHUS1)	---	A	W	1157	R
42	UniProt	VAR_025878	C	1163	W	CFAH_HUMAN	Disease (AHUS1)	---	A	C	1163	W
43	UniProt	VAR_063650	I	1169	L	CFAH_HUMAN	Disease (AHUS1)	---	A	I	1169	L
44	UniProt	VAR_063651	W	1183	C	CFAH_HUMAN	Disease (AHUS1)	---	A	W	1183	C
45	UniProt	VAR_025879	W	1183	L	CFAH_HUMAN	Disease (AHUS1)	---	A	W	1183	L
46	UniProt	VAR_025880	W	1183	R	CFAH_HUMAN	Disease (AHUS1)	---	A	W	1183	R
47	UniProt	VAR_025881	T	1184	R	CFAH_HUMAN	Disease (CFHD)	---	A	T	1184	R
48	UniProt	VAR_019407	L	1189	R	CFAH_HUMAN	Disease (AHUS1)	---	A	L	1189	R
49	UniProt	VAR_019408	S	1191	L	CFAH_HUMAN	Disease (AHUS1)	460897	A	S	1191	L
50	UniProt	VAR_025882	G	1194	D	CFAH_HUMAN	Disease (AHUS1)	---	A	G	1194	D
51	UniProt	VAR_025883	V	1197	A	CFAH_HUMAN	Disease (AHUS1)	460184	A	V	1197	A
52	UniProt	VAR_025884	E	1198	A	CFAH_HUMAN	Disease (AHUS1)	---	A	E	1198	A
53	UniProt	VAR_031986	F	1199	S	CFAH_HUMAN	Disease (AHUS1)	---	A	F	1199	S
54	UniProt	VAR_025885	R	1210	C	CFAH_HUMAN	Disease (ARMD4)	---	A	R	1210	C
55	UniProt	VAR_025886	R	1215	G	CFAH_HUMAN	Disease (AHUS1)	---	A	R	1215	G
56	UniProt	VAR_025887	R	1215	Q	CFAH_HUMAN	Disease (CFHD)	---	A	R	1215	Q
57	UniProt	VAR_025888	P	1226	S	CFAH_HUMAN	Disease (AHUS1)	---	A	P	1226	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 19)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	CFAH_HUMAN	19-82 83-143 144-207 208-264 265-322 387-444 446-507 515-566 567-625 628-686 689-746 751-805 809-866 868-928 929-986 987-1045 1046-1104 1107-1165 1194-1230	19	A:19-82 A:83-143 A:144-207 A:208-264 A:265-322 A:387-444 A:446-507 A:515-566 A:567-625 A:628-686 A:689-746 A:751-805 A:809-866 A:868-928 A:929-986 A:987-1045 A:1046-1104 A:1107-1165 A:1194-1230

Biological Unit 1 (1, 19)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SUSHI	PS50923	Sushi/CCP/SCR domain profile.	CFAH_HUMAN	19-82 83-143 144-207 208-264 265-322 387-444 446-507 515-566 567-625 628-686 689-746 751-805 809-866 868-928 929-986 987-1045 1046-1104 1107-1165 1194-1230	19	A:19-82 A:83-143 A:144-207 A:208-264 A:265-322 A:387-444 A:446-507 A:515-566 A:567-625 A:628-686 A:689-746 A:751-805 A:809-866 A:868-928 A:929-986 A:987-1045 A:1046-1104 A:1107-1165 A:1194-1230

Asymmetric Unit (22, 22)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000367429	1a	ENSE00001444484	chr1:196621008-196621305	298	CFAH_HUMAN	1-20	20	1	A:19-20	2
1.2a	ENST00000367429	2a	ENSE00001134426	chr1:196642108-196642293	186	CFAH_HUMAN	20-82	63	1	A:20-82	63
1.3	ENST00000367429	3	ENSE00000791013	chr1:196642987-196643092	106	CFAH_HUMAN	82-117	36	1	A:82-117	36
1.4	ENST00000367429	4	ENSE00000791014	chr1:196645119-196645195	77	CFAH_HUMAN	117-143	27	1	A:117-143	27
1.5b	ENST00000367429	5b	ENSE00000469039	chr1:196646606-196646797	192	CFAH_HUMAN	143-207	65	1	A:143-207	65
1.5c	ENST00000367429	5c	ENSE00000791016	chr1:196648753-196648923	171	CFAH_HUMAN	207-264	58	1	A:207-264	58
1.6	ENST00000367429	6	ENSE00000469041	chr1:196654194-196654367	174	CFAH_HUMAN	264-322	59	1	A:264-322	59
1.7	ENST00000367429	7	ENSE00001769047	chr1:196658550-196658744	195	CFAH_HUMAN	322-387	66	1	A:322-387	66
1.8a	ENST00000367429	8a	ENSE00001597868	chr1:196659193-196659369	177	CFAH_HUMAN	387-446	60	1	A:387-446	60
1.12	ENST00000367429	12	ENSE00000469044	chr1:196682865-196683047	183	CFAH_HUMAN	446-507	62	1	A:446-507	62
1.13	ENST00000367429	13	ENSE00000469045	chr1:196684723-196684899	177	CFAH_HUMAN	507-566	60	1	A:507-566	60
1.14	ENST00000367429	14	ENSE00000791022	chr1:196694251-196694427	177	CFAH_HUMAN	566-625	60	1	A:566-625	60
1.15	ENST00000367429	15	ENSE00000791023	chr1:196695600-196695782	183	CFAH_HUMAN	625-686	62	1	A:625-686	62
1.16	ENST00000367429	16	ENSE00000469048	chr1:196695891-196696070	180	CFAH_HUMAN	686-746	61	1	A:686-746	61
1.17	ENST00000367429	17	ENSE00000791025	chr1:196697476-196697652	177	CFAH_HUMAN	746-805	60	1	A:746-805	60
1.18a	ENST00000367429	18a	ENSE00000791026	chr1:196705954-196706136	183	CFAH_HUMAN	805-866	62	1	A:805-866	62
1.19	ENST00000367429	19	ENSE00000791027	chr1:196706605-196706790	186	CFAH_HUMAN	866-928	63	1	A:866-928	63
1.20a	ENST00000367429	20a	ENSE00000791028	chr1:196709749-196709922	174	CFAH_HUMAN	928-986	59	1	A:928-986	59
1.20d	ENST00000367429	20d	ENSE00000469053	chr1:196711005-196711181	177	CFAH_HUMAN	986-1045	60	1	A:986-1045	60
1.21	ENST00000367429	21	ENSE00001622338	chr1:196712582-196712758	177	CFAH_HUMAN	1045-1104	60	1	A:1045-1104	60
1.22	ENST00000367429	22	ENSE00001719380	chr1:196714947-196715129	183	CFAH_HUMAN	1104-1165	62	1	A:1104-1165	62
1.23	ENST00000367429	23	ENSE00001931000	chr1:196716241-196716634	394	CFAH_HUMAN	1165-1231	67	1	A:1165-1231	67

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:1213
 aligned with CFAH_HUMAN | P08603 from UniProtKB/Swiss-Prot  Length:1231

    Alignment length:1213
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228   
          CFAH_HUMAN     19 EDCNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNYGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNGWSDLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWSHPPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCINSRWTGRPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR 1231
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------I---------------G------------------------------------------------L-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y--------------------------------------------------------------------------K-H----------------------------S-------------------------------------------------------------R------------------------------------------R--------------T---------------G-----------------------------------------I--------------------W------------------------------------------S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K---------------------------------------I--R---------------------S--------------------D-------------HH----M--Y------------------C------------------T---------I--T------I---F---------------------R------Y--------T----------------E-S----------------------------------------G--------------G-------DE-------------R-----W-----L-------------CR----R-L--D--AAS----------C----G----------S----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-------------------------------Q---------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE SUSHI  PDB: A:19-82 UniProt: 19-82                              SUSHI  PDB: A:83-143 UniProt: 83-143                         SUSHI  PDB: A:144-207 UniProt: 144-207                          SUSHI  PDB: A:208-264 UniProt: 208-264                   SUSHI  PDB: A:265-322 UniProt: 265-322                    ----------------------------------------------------------------SUSHI  PDB: A:387-444 UniProt: 387-444                    -SUSHI  PDB: A:446-507 UniProt: 446-507                        -------SUSHI  PDB: A:515-566 UniProt: 515-566              SUSHI  PDB: A:567-625 UniProt: 567-625                     --SUSHI  PDB: A:628-686 UniProt: 628-686                     --SUSHI  PDB: A:689-746 UniProt: 689-746                    ----SUSHI  PDB: A:751-805 UniProt: 751-805                 ---SUSHI  PDB: A:809-866 UniProt: 809-866                    -SUSHI  PDB: A:868-928 UniProt: 868-928                       SUSHI  PDB: A:929-986 UniProt: 929-986                    SUSHI  PDB: A:987-1045 UniProt: 987-1045                   SUSHI  PDB: A:1046-1104 UniProt: 1046-1104                 --SUSHI  PDB: A:1107-1165 UniProt: 1107-1165                 ----------------------------SUSHI  PDB: A:1194-1230              - PROSITE
           Transcript 1 (1) 1.-------------------------------------------------------------Exon 1.3  PDB: A:82-117             -------------------------Exon 1.5b  PDB: A:143-207 UniProt: 143-207                       --------------------------------------------------------Exon 1.6  PDB: A:264-322 UniProt: 264-322                  ---------------------------------------------------------------------------------------------------------------------------Exon 1.12  PDB: A:446-507 UniProt: 446-507                    ----------------------------------------------------------Exon 1.14  PDB: A:566-625 UniProt: 566-625                  ------------------------------------------------------------Exon 1.16  PDB: A:686-746 UniProt: 686-746                   ----------------------------------------------------------Exon 1.18a  PDB: A:805-866 UniProt: 805-866                   -------------------------------------------------------------Exon 1.20a  PDB: A:928-986 UniProt: 928-986                ----------------------------------------------------------Exon 1.21  PDB: A:1045-1104 UniProt: 1045-1104              ------------------------------------------------------------Exon 1.23  PDB: A:1165-1231 UniProt: 1165-1231                      Transcript 1 (1)
           Transcript 1 (2) -Exon 1.2a  PDB: A:20-82 UniProt: 20-82                         ----------------------------------Exon 1.4  PDB: A:117-143   ---------------------------------------------------------------Exon 1.5c  PDB: A:207-264 UniProt: 207-264                ---------------------------------------------------------Exon 1.7  PDB: A:322-387 UniProt: 322-387                         -----------------------------------------------------------------------------------------------------------------------Exon 1.13  PDB: A:507-566 UniProt: 507-566                  ----------------------------------------------------------Exon 1.15  PDB: A:625-686 UniProt: 625-686                    -----------------------------------------------------------Exon 1.17  PDB: A:746-805 UniProt: 746-805                  ------------------------------------------------------------Exon 1.19  PDB: A:866-928 UniProt: 866-928                     ---------------------------------------------------------Exon 1.20d  PDB: A:986-1045 UniProt: 986-1045               ----------------------------------------------------------Exon 1.22  PDB: A:1104-1165 UniProt: 1104-1165                ------------------------------------------------------------------ Transcript 1 (2)
           Transcript 1 (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.8a  PDB: A:387-446 UniProt: 387-446                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                3gaw A   19 EDCNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNGWSDLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWSHPPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCINSRWTGRPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR 1231
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3GAW)

(no "CATH Domain" information available for 3GAW)

(no "Pfam Domain" information available for 3GAW)

Asymmetric Unit(hide GO term definitions)

Chain A (CFAH_HUMAN | P08603)

molecular function
	GO:0043395	heparan sulfate proteoglycan binding	Interacting selectively and non-covalently with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit.
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006956	complement activation	Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
	GO:0006957	complement activation, alternative pathway	Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0030449	regulation of complement activation	Any process that modulates the frequency, rate or extent of complement activation.
cellular component
	GO:0072562	blood microparticle	A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Asymmetric Unit
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(no "Ligands, Modified Residues, Ions" information available for 3gaw)

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(no "Sites" information available for 3gaw)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3gaw)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	3gaw
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	CFAH_HUMAN \| P08603
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	235400
		Disease Information	:	OMIM
	609814
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	610698
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1haq	FH SCR 1-20 SOLUTION STRUCTURE FROM 2001
1hfh	FH SCR DOMAINS 15-16 (NMR STRUCTURE)
2g7i	FH SCR DOMAINS 19-20 (CRYSTAL STRUCTURE)
2ic4	FH SCR 6-8 SOLUTION STRUCTURE FROM 2007
2qfg	FH SCR 1-5 SOLUTION STRUCTURE FROM 2008
2qfh	FH SCR 16-20 SOLUTION STRUCTURE FROM 2008
2rlp	FH SCR DOMAINS 1-2 (NMR STRUCTURE)
2rlq	FH SCR DOMAINS 2-3 (NMR STRUCTURE)
2uwn	FH SCR DOMAINS 6-8 (CRYSTAL STRUCTURE)
3gau
3gav

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (57, 57)

PROSITE Motifs (1, 19)

Exons (22, 22)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (12, 12)

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Related Entries Specified in the PDB File