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(-) Description

Title :  COMPLEMENT C3B IN COMPLEX WITH FACTOR H DOMAINS 1-4
 
Authors :  J. Wu, B. J. C. Janssen, P. Gros
Date :  12 May 09  (Deposition) - 09 Jun 09  (Release) - 04 Aug 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Biol. Unit 4:  C  (1x)
Keywords :  Immune System, Sushi, Secreted, Polymorphism, Glycoprotein, Complement System, Complement Pathway, Immune Response, Innate Immunity, Disease Mutation, Inflammatory Response, Complement Alternate Pathway, Cleavage On Pair Of Basic Residues, Age-Related Macular Degeneration, Regulator Of Complement Activation, Alternative Pathway, Alternative Splicing, Phosphoprotein, Disulfide Bond, Thioester Bond (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Wu, Y. Wu, D. Ricklin, B. J. C. Janssen, J. D. Lambris, P. Gros
Structure Of Complement Fragment C3B-Factor H And Implications For Host Protection By Complement Regulators.
Nat. Immunol. V. 10 728 2009
PubMed-ID: 19503104  |  Reference-DOI: 10.1038/NI.1755

(-) Compounds

Molecule 1 - COMPLEMENT C3 BETA CHAIN
    ChainsA
    FragmentRESIDUES 23-667
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCOMPLEMENT C3, C3 AND PZP-LIKE ALPHA-2- MACROGLOBULIN DOMAIN-CONTAINING PROTEIN 1
 
Molecule 2 - COMPLEMENT C3B ALPHA' CHAIN
    ChainsB
    FragmentRESIDUES 749-1663
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCOMPLEMENT C3, C3 AND PZP-LIKE ALPHA-2- MACROGLOBULIN DOMAIN-CONTAINING PROTEIN 1
 
Molecule 3 - COMPLEMENT FACTOR H
    ChainsC
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System PlasmidPSECTAG 2B-FH(1-4)
    Expression System StrainHEK293E
    Expression System Taxid9606
    Expression System VectorPSECTAG 2B
    FragmentRESIDUES 18-264
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymH FACTOR 1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)ABC
Biological Unit 2 (1x)A  
Biological Unit 3 (1x) B 
Biological Unit 4 (1x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 25)

Asymmetric Unit (4, 25)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2CA1Ligand/IonCALCIUM ION
3GOL17Ligand/IonGLYCEROL
4NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3GOL17Ligand/IonGLYCEROL
4NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3GOL3Ligand/IonGLYCEROL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (2, 14)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3GOL13Ligand/IonGLYCEROL
4NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3GOL1Ligand/IonGLYCEROL
4NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:505 , ASP A:532 , VAL A:533 , ASP A:535BINDING SITE FOR RESIDUE CA A1643
02AC2SOFTWAREILE B:734 , GLU B:736 , ARG B:841 , GLU B:843 , LYS B:891 , ALA B:893BINDING SITE FOR RESIDUE GOL B2642
03AC3SOFTWAREPRO A:136 , GLY A:138 , GLN A:161 , ASN A:162BINDING SITE FOR RESIDUE GOL A1644
04AC4SOFTWARETRP B:749 , ASN B:752 , ILE B:771 , PHE B:772 , ASP C:72BINDING SITE FOR RESIDUE GOL B2643
05AC5SOFTWAREILE B:1498 , LYS B:1500 , TRP B:1605 , VAL B:1606BINDING SITE FOR RESIDUE GOL B2644
06AC6SOFTWARELEU A:541 , HOH A:2060 , VAL B:795 , ALA B:796 , ASP B:797BINDING SITE FOR RESIDUE GOL B2645
07AC7SOFTWARELEU A:176 , GLU B:953 , HIS B:1327BINDING SITE FOR RESIDUE GOL B2646
08AC8SOFTWARESER A:618 , ALA A:633 , GLN A:634 , ARG A:635 , HOH A:2074BINDING SITE FOR RESIDUE GOL A1645
09AC9SOFTWARETYR A:224 , ALA A:412 , GLU C:135 , ASN C:136 , CYS C:187BINDING SITE FOR RESIDUE GOL C1248
10BC1SOFTWARELYS A:114 , THR A:118 , GLU B:747 , SER B:748BINDING SITE FOR RESIDUE GOL B2647
11BC2SOFTWARELEU B:1219 , GLN B:1220 , LYS B:1222 , GLN B:1259 , ASP B:1263 , HOH B:2081BINDING SITE FOR RESIDUE GOL B2648
12BC3SOFTWAREARG A:126 , PRO A:168 , TRP B:751 , VAL B:753 , ASN C:97BINDING SITE FOR RESIDUE GOL B2649
13BC4SOFTWAREILE B:982 , THR B:984 , LEU B:1026BINDING SITE FOR RESIDUE GOL B2650
14BC5SOFTWAREASP B:1273 , SER B:1275 , LYS B:1284 , THR B:1311 , GLU B:1313BINDING SITE FOR RESIDUE GOL B2651
15BC6SOFTWARELEU A:455 , ARG A:456 , MET A:457 , ARG A:486 , GLY A:489 , GLN A:490 , ASP A:491BINDING SITE FOR RESIDUE GOL A1646
16BC7SOFTWARELYS B:1524 , HIS B:1579 , TRP B:1609 , PRO B:1610 , GLU B:1611BINDING SITE FOR RESIDUE GOL B2652
17BC8SOFTWARETRP B:1055 , GLU B:1098 , PRO B:1101 , VAL B:1102 , GLN B:1105BINDING SITE FOR RESIDUE GOL B2653
18BC9SOFTWAREARG B:1238BINDING SITE FOR RESIDUE GOL B2654
19CC1SOFTWARETHR A:19 , ASN A:63 , LEU A:479 , LYS A:480 , ALA A:481 , NAG A:1648BINDING SITE FOR RESIDUE NAG A1647
20CC2SOFTWARENAG A:1647 , BMA A:1649 , BMA A:1650 , BMA A:1652BINDING SITE FOR RESIDUE NAG A1648
21CC3SOFTWARENAG A:1648 , BMA A:1650 , BMA A:1652BINDING SITE FOR RESIDUE BMA A1649
22CC4SOFTWARENAG A:1648 , BMA A:1649 , BMA A:1651BINDING SITE FOR RESIDUE BMA A1650
23CC5SOFTWAREBMA A:1650BINDING SITE FOR RESIDUE BMA A1651
24CC6SOFTWARENAG A:1648 , BMA A:1649BINDING SITE FOR RESIDUE BMA A1652
25CC7SOFTWAREASN B:917BINDING SITE FOR RESIDUE NAG B2655

(-) SS Bonds  (17, 17)

Asymmetric Unit
No.Residues
1A:537 -B:794
2A:605 -A:640
3B:851 -B:1491
4B:1079 -B:1136
5B:1336 -B:1467
6B:1484 -B:1489
7B:1496 -B:1568
8B:1515 -B:1639
9B:1615 -B:1624
10C:3 -C:48
11C:34 -C:62
12C:67 -C:111
13C:96 -C:123
14C:128 -C:174
15C:160 -C:187
16C:192 -C:233
17C:219 -C:244

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Phe A:40 -Pro A:41
2Ile A:504 -Pro A:505
3Arg C:239 -Pro C:240

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (24, 24)

Asymmetric Unit (24, 24)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_023836V62ICFAH_HUMANPolymorphism800292CI44I
02UniProtVAR_025864R78GCFAH_HUMANDisease (AHUS1)  ---CR60G
03UniProtVAR_001983R102GCO3_HUMANPolymorphism2230199AR80G
04UniProtVAR_031978R127LCFAH_HUMANDisease (CFHD)  ---CR109L
05UniProtVAR_070941K155QCO3_HUMANDisease (ARMD9)147859257AK133Q
06UniProtVAR_001984P314LCO3_HUMANPolymorphism1047286AP292L
07UniProtVAR_020262E469DCO3_HUMANPolymorphism11569422AE447D
08UniProtVAR_001985D549NCO3_HUMANDisease (C3D)  ---AD527N
09UniProtVAR_063213R592QCO3_HUMANDisease (AHUS5)121909583AR570Q
10UniProtVAR_063214R592WCO3_HUMANDisease (AHUS5)771353792AR570W
11UniProtVAR_063654F603VCO3_HUMANDisease (AHUS5)  ---AF581V
12UniProtVAR_019206R863KCO3_HUMANPolymorphism11569472BR841K
13UniProtVAR_063655R1042LCO3_HUMANDisease (AHUS5)  ---BR1020L
14UniProtVAR_063216A1094VCO3_HUMANDisease (AHUS5)121909584BA1072V
15UniProtVAR_063217D1115NCO3_HUMANDisease (AHUS5)121909585BD1093N
16UniProtVAR_063218C1158WCO3_HUMANDisease (AHUS5)  ---BC1136W
17UniProtVAR_063219Q1161KCO3_HUMANDisease (AHUS5)  ---BQ1139K
18UniProtVAR_022761D1216NCO3_HUMANUnclassified  ---BD1194N
19UniProtVAR_019207G1224DCO3_HUMANPolymorphism11569534BG1202D
20UniProtVAR_019208I1367TCO3_HUMANPolymorphism11569541BI1345T
21UniProtVAR_063220H1464DCO3_HUMANDisease (AHUS5)  ---BH1442D
22UniProtVAR_029792Q1521RCO3_HUMANPolymorphism7256789BQ1499R
23UniProtVAR_029793H1601NCO3_HUMANPolymorphism1803225BH1579N
24UniProtVAR_029326S1619RCO3_HUMANPolymorphism2230210BS1597R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (24, 24)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_023836V62ICFAH_HUMANPolymorphism800292CI44I
02UniProtVAR_025864R78GCFAH_HUMANDisease (AHUS1)  ---CR60G
03UniProtVAR_001983R102GCO3_HUMANPolymorphism2230199AR80G
04UniProtVAR_031978R127LCFAH_HUMANDisease (CFHD)  ---CR109L
05UniProtVAR_070941K155QCO3_HUMANDisease (ARMD9)147859257AK133Q
06UniProtVAR_001984P314LCO3_HUMANPolymorphism1047286AP292L
07UniProtVAR_020262E469DCO3_HUMANPolymorphism11569422AE447D
08UniProtVAR_001985D549NCO3_HUMANDisease (C3D)  ---AD527N
09UniProtVAR_063213R592QCO3_HUMANDisease (AHUS5)121909583AR570Q
10UniProtVAR_063214R592WCO3_HUMANDisease (AHUS5)771353792AR570W
11UniProtVAR_063654F603VCO3_HUMANDisease (AHUS5)  ---AF581V
12UniProtVAR_019206R863KCO3_HUMANPolymorphism11569472BR841K
13UniProtVAR_063655R1042LCO3_HUMANDisease (AHUS5)  ---BR1020L
14UniProtVAR_063216A1094VCO3_HUMANDisease (AHUS5)121909584BA1072V
15UniProtVAR_063217D1115NCO3_HUMANDisease (AHUS5)121909585BD1093N
16UniProtVAR_063218C1158WCO3_HUMANDisease (AHUS5)  ---BC1136W
17UniProtVAR_063219Q1161KCO3_HUMANDisease (AHUS5)  ---BQ1139K
18UniProtVAR_022761D1216NCO3_HUMANUnclassified  ---BD1194N
19UniProtVAR_019207G1224DCO3_HUMANPolymorphism11569534BG1202D
20UniProtVAR_019208I1367TCO3_HUMANPolymorphism11569541BI1345T
21UniProtVAR_063220H1464DCO3_HUMANDisease (AHUS5)  ---BH1442D
22UniProtVAR_029792Q1521RCO3_HUMANPolymorphism7256789BQ1499R
23UniProtVAR_029793H1601NCO3_HUMANPolymorphism1803225BH1579N
24UniProtVAR_029326S1619RCO3_HUMANPolymorphism2230210BS1597R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (8, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
03UniProtVAR_001983R102GCO3_HUMANPolymorphism2230199AR80G
05UniProtVAR_070941K155QCO3_HUMANDisease (ARMD9)147859257AK133Q
06UniProtVAR_001984P314LCO3_HUMANPolymorphism1047286AP292L
07UniProtVAR_020262E469DCO3_HUMANPolymorphism11569422AE447D
08UniProtVAR_001985D549NCO3_HUMANDisease (C3D)  ---AD527N
09UniProtVAR_063213R592QCO3_HUMANDisease (AHUS5)121909583AR570Q
10UniProtVAR_063214R592WCO3_HUMANDisease (AHUS5)771353792AR570W
11UniProtVAR_063654F603VCO3_HUMANDisease (AHUS5)  ---AF581V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (13, 13)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
12UniProtVAR_019206R863KCO3_HUMANPolymorphism11569472BR841K
13UniProtVAR_063655R1042LCO3_HUMANDisease (AHUS5)  ---BR1020L
14UniProtVAR_063216A1094VCO3_HUMANDisease (AHUS5)121909584BA1072V
15UniProtVAR_063217D1115NCO3_HUMANDisease (AHUS5)121909585BD1093N
16UniProtVAR_063218C1158WCO3_HUMANDisease (AHUS5)  ---BC1136W
17UniProtVAR_063219Q1161KCO3_HUMANDisease (AHUS5)  ---BQ1139K
18UniProtVAR_022761D1216NCO3_HUMANUnclassified  ---BD1194N
19UniProtVAR_019207G1224DCO3_HUMANPolymorphism11569534BG1202D
20UniProtVAR_019208I1367TCO3_HUMANPolymorphism11569541BI1345T
21UniProtVAR_063220H1464DCO3_HUMANDisease (AHUS5)  ---BH1442D
22UniProtVAR_029792Q1521RCO3_HUMANPolymorphism7256789BQ1499R
23UniProtVAR_029793H1601NCO3_HUMANPolymorphism1803225BH1579N
24UniProtVAR_029326S1619RCO3_HUMANPolymorphism2230210BS1597R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (3, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_023836V62ICFAH_HUMANPolymorphism800292CI44I
02UniProtVAR_025864R78GCFAH_HUMANDisease (AHUS1)  ---CR60G
04UniProtVAR_031978R127LCFAH_HUMANDisease (CFHD)  ---CR109L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 5)

Asymmetric Unit (3, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
  3-
C:65-125
C:126-189
C:190-246
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015  1B:985-993
3NTRPS50189 NTR domain profile.CO3_HUMAN1518-1661  1B:1496-1639
Biological Unit 1 (3, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
  3-
C:65-125
C:126-189
C:190-246
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015  1B:985-993
3NTRPS50189 NTR domain profile.CO3_HUMAN1518-1661  1B:1496-1639
Biological Unit 2 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
  0-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015  0-
3NTRPS50189 NTR domain profile.CO3_HUMAN1518-1661  0-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
  0-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015  1B:985-993
3NTRPS50189 NTR domain profile.CO3_HUMAN1518-1661  1B:1496-1639
Biological Unit 4 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SUSHIPS50923 Sushi/CCP/SCR domain profile.CFAH_HUMAN19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
  3-
C:65-125
C:126-189
C:190-246
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2ALPHA_2_MACROGLOBULINPS00477 Alpha-2-macroglobulin family thiolester region signature.CO3_HUMAN1007-1015  0-
3NTRPS50189 NTR domain profile.CO3_HUMAN1518-1661  0-

(-) Exons   (46, 46)

Asymmetric Unit (46, 46)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3aENST000002459073aENSE00001938285chr19:6720693-6720527167CO3_HUMAN1-25251A:1-3
-
3
-
1.4ENST000002459074ENSE00001053574chr19:6719414-6719222193CO3_HUMAN25-89651A:3-67
-
65
-
1.5ENST000002459075ENSE00000858140chr19:6718423-6718258166CO3_HUMAN90-145561A:68-123 (gaps)
-
56
-
1.6aENST000002459076aENSE00001053592chr19:6718175-671810571CO3_HUMAN145-168241A:123-146
-
24
-
1.7ENST000002459077ENSE00000858137chr19:6714457-671436395CO3_HUMAN169-200321A:147-178
-
32
-
1.8bENST000002459078bENSE00001053577chr19:6714259-671417783CO3_HUMAN200-228291A:178-206
-
29
-
1.9ENST000002459079ENSE00001053565chr19:6714093-671400391CO3_HUMAN228-258311A:206-236
-
31
-
1.11ENST0000024590711ENSE00001053527chr19:6713520-6713418103CO3_HUMAN258-292351A:236-270
-
35
-
1.12bENST0000024590712bENSE00000858133chr19:6713326-6713200127CO3_HUMAN293-335431A:271-313
-
43
-
1.13ENST0000024590713ENSE00001053519chr19:6712634-6712519116CO3_HUMAN335-373391A:313-351
-
39
-
1.14bENST0000024590714bENSE00001053582chr19:6712417-6712268150CO3_HUMAN374-423501A:352-401
-
50
-
1.15ENST0000024590715ENSE00000858130chr19:6711207-6710998210CO3_HUMAN424-493701A:402-471
-
70
-
1.16bENST0000024590716bENSE00001159750chr19:6710856-6710650207CO3_HUMAN494-562691A:472-540
-
69
-
1.17bENST0000024590717bENSE00000858128chr19:6709853-6709695159CO3_HUMAN563-615531A:541-593
-
53
-
1.18ENST0000024590718ENSE00000858127chr19:6707940-6707811130CO3_HUMAN616-659441A:594-637
-
44
-
1.19ENST0000024590719ENSE00001053520chr19:6707548-670747772CO3_HUMAN659-683251A:637-642
-
6
-
1.20ENST0000024590720ENSE00001053532chr19:6707284-6707087198CO3_HUMAN683-749670--
1.21cENST0000024590721cENSE00001053537chr19:6702590-6702482109CO3_HUMAN749-785371-
B:730-763
-
34
1.22ENST0000024590722ENSE00001053579chr19:6702223-670213886CO3_HUMAN785-814301-
B:763-792
-
30
1.23bENST0000024590723bENSE00001053525chr19:6697805-6697663143CO3_HUMAN814-861481-
B:792-839
-
48
1.23dENST0000024590723dENSE00000858122chr19:6697567-6697355213CO3_HUMAN862-932711-
B:840-910
-
71
1.24bENST0000024590724bENSE00000858121chr19:6696670-669660467CO3_HUMAN933-955231-
B:911-933
-
23
1.25ENST0000024590725ENSE00001053553chr19:6696476-669639087CO3_HUMAN955-984301-
B:933-962
-
30
1.26ENST0000024590726ENSE00000858119chr19:6694645-6694442204CO3_HUMAN984-1052691-
B:962-1030
-
69
1.27ENST0000024590727ENSE00000858118chr19:6693498-669342376CO3_HUMAN1052-1077261-
B:1030-1055
-
26
1.28cENST0000024590728cENSE00000858117chr19:6693094-6692935160CO3_HUMAN1077-1130541-
B:1055-1108
-
54
1.29ENST0000024590729ENSE00000858116chr19:6690738-669064099CO3_HUMAN1131-1163331-
B:1109-1141
-
33
1.31aENST0000024590731aENSE00000858115chr19:6686913-6686757157CO3_HUMAN1164-1216531-
B:1142-1194
-
53
1.31dENST0000024590731dENSE00001504968chr19:6686298-6686135164CO3_HUMAN1216-1270551-
B:1194-1248
-
55
1.32ENST0000024590732ENSE00001159688chr19:6685157-6684999159CO3_HUMAN1271-1323531-
B:1249-1301
-
53
1.33ENST0000024590733ENSE00000858111chr19:6684845-668478660CO3_HUMAN1324-1343201-
B:1302-1321
-
20
1.34aENST0000024590734aENSE00001053551chr19:6684661-668457191CO3_HUMAN1344-1374311-
B:1322-1349
-
28
1.35aENST0000024590735aENSE00000858109chr19:6684450-668439952CO3_HUMAN1374-1391181-
B:1359-1369
-
11
1.36bENST0000024590736bENSE00000858108chr19:6682240-668215388CO3_HUMAN1391-1420301-
B:1369-1398
-
30
1.37ENST0000024590737ENSE00000858107chr19:6682041-668195290CO3_HUMAN1421-1450301-
B:1399-1428
-
30
1.38ENST0000024590738ENSE00000858106chr19:6680274-6680169106CO3_HUMAN1451-1486361-
B:1429-1464
-
36
1.40aENST0000024590740aENSE00000858105chr19:6679507-667941890CO3_HUMAN1486-1516311-
B:1464-1494 (gaps)
-
31
1.41aENST0000024590741aENSE00000858104chr19:6679219-667913684CO3_HUMAN1516-1544291-
B:1494-1522
-
29
1.42ENST0000024590742ENSE00000858103chr19:6678466-667838384CO3_HUMAN1544-1572291-
B:1522-1550
-
29
1.43ENST0000024590743ENSE00000858102chr19:6678298-6678163136CO3_HUMAN1572-1617461-
B:1550-1595
-
46
1.44cENST0000024590744cENSE00001159829chr19:6678034-6677846189CO3_HUMAN1617-1663471-
B:1595-1641
-
47

2.1aENST000003674291aENSE00001444484chr1:196621008-196621305298CFAH_HUMAN1-20200--
2.2aENST000003674292aENSE00001134426chr1:196642108-196642293186CFAH_HUMAN20-82631C:3-6462
2.3ENST000003674293ENSE00000791013chr1:196642987-196643092106CFAH_HUMAN82-117361C:64-9936
2.4ENST000003674294ENSE00000791014chr1:196645119-19664519577CFAH_HUMAN117-143271C:99-12527
2.5bENST000003674295bENSE00000469039chr1:196646606-196646797192CFAH_HUMAN143-207651C:125-18965
2.5cENST000003674295cENSE00000791016chr1:196648753-196648923171CFAH_HUMAN207-264581C:189-24658
2.6ENST000003674296ENSE00000469041chr1:196654194-196654367174CFAH_HUMAN264-322591C:246-2472
2.7ENST000003674297ENSE00001769047chr1:196658550-196658744195CFAH_HUMAN322-387660--
2.8aENST000003674298aENSE00001597868chr1:196659193-196659369177CFAH_HUMAN387-446600--
2.12ENST0000036742912ENSE00000469044chr1:196682865-196683047183CFAH_HUMAN446-507620--
2.13ENST0000036742913ENSE00000469045chr1:196684723-196684899177CFAH_HUMAN507-566600--
2.14ENST0000036742914ENSE00000791022chr1:196694251-196694427177CFAH_HUMAN566-625600--
2.15ENST0000036742915ENSE00000791023chr1:196695600-196695782183CFAH_HUMAN625-686620--
2.16ENST0000036742916ENSE00000469048chr1:196695891-196696070180CFAH_HUMAN686-746610--
2.17ENST0000036742917ENSE00000791025chr1:196697476-196697652177CFAH_HUMAN746-805600--
2.18aENST0000036742918aENSE00000791026chr1:196705954-196706136183CFAH_HUMAN805-866620--
2.19ENST0000036742919ENSE00000791027chr1:196706605-196706790186CFAH_HUMAN866-928630--
2.20aENST0000036742920aENSE00000791028chr1:196709749-196709922174CFAH_HUMAN928-986590--
2.20dENST0000036742920dENSE00000469053chr1:196711005-196711181177CFAH_HUMAN986-1045600--
2.21ENST0000036742921ENSE00001622338chr1:196712582-196712758177CFAH_HUMAN1045-1104600--
2.22ENST0000036742922ENSE00001719380chr1:196714947-196715129183CFAH_HUMAN1104-1165620--
2.23ENST0000036742923ENSE00001931000chr1:196716241-196716634394CFAH_HUMAN1165-1231670--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:640
 aligned with CO3_HUMAN | P01024 from UniProtKB/Swiss-Prot  Length:1663

    Alignment length:642
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662  
           CO3_HUMAN     23 SPMYSIITPNILRLESEETMVLEAHDAQGDVPVTVTVHDFPGKKLVLSSEKTVLTPATNHMGNVTFTIPANREFKSEKGRNKFVTVQATFGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFVIFGIQDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNPRAEDLVGKSLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIWDVVEKADIGCTPGSGKDYAGVFSDAGLTFTSSSGQQTAQRAELQCPQ  664
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------A2M_N-2wiiA01 A:107-202                                                                         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A2M_N_2-2wiiA02 A:434-583                                                                                                                             ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.eee...eeeeeeeee.....eeeeeeeee......eeeeeeeeehhhhh.eeeeeee........--....eeeeeeeee..eeeeeeeeee...eeeeeee...ee....eeeeeeeeee........eeeeeee.....eeeeeeee......eeeeeee.......eeeeeeeee.......eeeeeee.......eeeeeee....ee......eeeeeeeee.......eeeeeeeeeee..eeeeeeeeeeeeee...eeeeeehhhhhhhhh....hhhhh..eeeeeeeeee.....eeeeeeeeeeee....eee......ee....eeeeeeeee..........eeee..eeeeeee.....eeeeeee.......eeeeeee...........eeeeeeee..hhhhh..eeeeee.........eeeeeeeee.hhhhhh...eeeeeeee..eeeeeeeee......eeeeeee.hhhhh.eeeeeeeeeeee...eeeeeeeeeeee........eeeee............eeeeeeeee...eeeeeeeehhhhhhh.....hhhhhhhhhhhhh.........hhhhhhhhhheeeee................ Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------G----------------------------------------------------Q--------------------------------------------------------------------------------------------------------------------------------------------------------------L----------------------------------------------------------------------------------------------------------------------------------------------------------D-------------------------------------------------------------------------------N------------------------------------------Q----------V------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.3----------------------------------------------------------------Exon 1.5  PDB: A:68-123 (gaps) UniProt: 90-145          -----------------------Exon 1.7  PDB: A:147-178        ---------------------------------------------------------Exon 1.11  PDB: A:236-270          Exon 1.12b  PDB: A:271-313 UniProt: 293-335--------------------------------------Exon 1.14b  PDB: A:352-401 UniProt: 374-423       Exon 1.15  PDB: A:402-471 UniProt: 424-493                            Exon 1.16b  PDB: A:472-540 UniProt: 494-562                          Exon 1.17b  PDB: A:541-593 UniProt: 563-615          Exon 1.18  PDB: A:594-637 UniProt: 616-659  ----- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.4  PDB: A:3-67 UniProt: 25-89                             -------------------------------------------------------Exon 1.6a  PDB: A:123-14-------------------------------Exon 1.8b  PDB: A:178-206    ----------------------------------------------------------------------------------------------------------Exon 1.13  PDB: A:313-351              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.19   Transcript 1 (2)
           Transcript 1 (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: A:206-236       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                2wii A    1 SPMYSIITPNILRLESEETMVLEAHDAQGDVPVTVTVHDFPGKKLVLSSEKTVLTPATNHMGNVTFTIPANREFK--KGRNKFVTVQATFGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFVIFGIQDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNPRAEDLVGKSLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIWDVVEKADIGCTPGSGKDYAGVFSDAGLTFTSSSGQQTAQRAELQCPQ  642
                                    10        20        30        40        50        60        70    |  |80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640  
                                                                                                     75 78                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    

Chain B from PDB  Type:PROTEIN  Length:896
 aligned with CO3_HUMAN | P01024 from UniProtKB/Swiss-Prot  Length:1663

    Alignment length:912
                                   761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521      1531      1541      1551      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651      1661  
           CO3_HUMAN    752 DEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN 1663
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------A2M-2wiiB02 B:748-844                                                                            ------------------------------------------------------------------------------------------------------------------------------------Thiol-ester_cl-2wiiB05         ---------------------A2M_comp-2wiiB01 B:1029-1262                                                                                                                                                                                                              -----------------------------------------------------------------------------------------------------------------A2M_recep-2wiiB04 B:1376-1471                                                                   ----------------------------------------NTR-2wiiB03 B:1512-1622                                                                                        ------------------- Pfam domains
         Sec.struct. author .....hhhhh........ee...eee........eeeeeeeee......eeeeeeeeee..................eeeeee...eee....eeeeeeeee......eeeeeee.....ee........eeeeeee...eeeeeeeeeee...eeeeeeeeeee.....eeeeeeeeeee...eeeeeeeeeeeehhhhhh...eeeeee..............eeeeeeeee..........hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhh.hhh......hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh......eeeeeee.......eeeeee.hhh...eeeee.....eeeeeeee.eeeeeeeeeeee..........eeeeeeeee..---------.eeeeeeeeeee........eeeeee....eeehhhhhhhhhh...ee.hhhhhhh......eeeeee........eeeeeeeee.........eeeeeee......eeeeee.....-------..hhhhhhhh............hhhhhhhhhhh....eeeeeeeeeee....eeeeeeeeeeeee..........eeeeeee..hhhhhh.....eeeeeehhh.ee.hhhhheee.....eeeee.hhhhhh...hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L---------------------------------------------------V--------------------N------------------------------------------W--K------------------------------------------------------N-------D----------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------D--------------------------------------------------------R-------------------------------------------------------------------------------N-----------------R-------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALPHA_2_M----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NTR  PDB: B:1496-1639 UniProt: 1518-1661                                                                                                        -- PROSITE
           Transcript 1 (1) ---------------------------------Exon 1.22  PDB: B:763-792     -----------------------------------------------Exon 1.23d  PDB: B:840-910 UniProt: 862-932                            Exon 1.24b             ----------------------------Exon 1.26  PDB: B:962-1030 UniProt: 984-1052                         ------------------------Exon 1.28c  PDB: B:1055-1108 UniProt: 1077-1130       Exon 1.29  PDB: B:1109-1141      Exon 1.31a  PDB: B:1142-1194 UniProt: 1164-1216      ------------------------------------------------------Exon 1.32  PDB: B:1249-1301 UniProt: 1271-1323       Exon 1.33           Exon 1.34a  PDB: B:1322-1349   ----------------Exon 1.36b  PDB: B:1369-1398  Exon 1.37  PDB: B:1399-1428   Exon 1.38  PDB: B:1429-1464         -----------------------------Exon 1.41a  PDB: B:1494-1522 ---------------------------Exon 1.43  PDB: B:1550-1595 UniProt: 1572-1617---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.21c  PDB: B:730-763        ----------------------------Exon 1.23b  PDB: B:792-839 UniProt: 814-861     ---------------------------------------------------------------------------------------------Exon 1.25  PDB: B:933-962     -------------------------------------------------------------------Exon 1.27  PDB: B:1030-105------------------------------------------------------------------------------------------------------------------------------------------Exon 1.31d  PDB: B:1194-1248 UniProt: 1216-1270        -------------------------------------------------------------------------------------------------------Exon 1.35a        ----------------------------------------------------------------------------------------------Exon 1.40a UniProt: 1486-1516  ---------------------------Exon 1.42  PDB: B:1522-1550  --------------------------------------------Exon 1.44c  PDB: B:1595-1641 UniProt: 1617-1663 Transcript 1 (2)
           Transcript 1 (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (3)
                2wii B  730 DEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAP---------KNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKE-------CRDELCRCAEENCFIQKSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN 1641
                                   739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399      1409      1419      1429      1439      1449      1459      1469      |  -    | 1489      1499      1509      1519      1529      1539      1549      1559      1569      1579      1589      1599      1609      1619      1629      1639  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    1349      1359                                                                                                                 1476    1484                                                                                                                                                             

Chain C from PDB  Type:PROTEIN  Length:245
 aligned with CFAH_HUMAN | P08603 from UniProtKB/Swiss-Prot  Length:1231

    Alignment length:245
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260     
          CFAH_HUMAN     21 CNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEK  265
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------2wiiC03 C:127-190 Complement Module, domain 1                   --------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Sushi-2wiiC01 C:192-244                              --- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Sushi-2wiiC02 C:192-244                              --- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Sushi-2wiiC03 C:192-244                              --- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Sushi-2wiiC04 C:192-244                              --- Pfam domains (4)
         Sec.struct. author ..........eee.............eeeeee...ee....eeeee....eee.......ee...........eeeeee.........eeeeee...eeee....eee...........eeee.ee........ee...........ee...eee.ee...eeee...eee............eeee.ee.......eee......ee...eeeeee...eee....eeeee..ee.....eee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------I---------------G------------------------------------------------L------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE SUSHI  PDB: - UniProt: 19-82                                  SUSHI  PDB: C:65-125 UniProt: 83-143                         SUSHI  PDB: C:126-189 UniProt: 144-207                          SUSHI  PDB: C:190-246 UniProt: 208-264                   S PROSITE
           Transcript 2 (1) Exon 2.2a  PDB: C:3-64 UniProt: 20-82 [INCOMPLETE]            ----------------------------------Exon 2.4  PDB: C:99-125    ---------------------------------------------------------------Exon 2.5c  PDB: C:189-246 UniProt: 207-264                - Transcript 2 (1)
           Transcript 2 (2) -------------------------------------------------------------Exon 2.3  PDB: C:64-99              -------------------------Exon 2.5b  PDB: C:125-189 UniProt: 143-207                       --------------------------------------------------------2. Transcript 2 (2)
                2wii C    3 CNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNIIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEA  247
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WII)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (8, 11)

Asymmetric Unit
(-)
Clan: 6_Hairpin (120)
(-)
Clan: E-set (290)
(-)
Clan: Ig (577)
(-)
Family: A2M (13)
(-)
Family: NTR (13)
4aNTR-2wiiB03B:1512-1622
(-)
Family: Sushi (50)
7aSushi-2wiiC01C:192-244
7bSushi-2wiiC02C:192-244
7cSushi-2wiiC03C:192-244
7dSushi-2wiiC04C:192-244

(-) Gene Ontology  (49, 59)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (CO3_HUMAN | P01024)
molecular function
    GO:0031715    C5L2 anaphylatoxin chemotactic receptor binding    Interacting selectively and non-covalently with a C5L2 anaphylatoxin chemotactic receptor.
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
    GO:0004866    endopeptidase inhibitor activity    Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006957    complement activation, alternative pathway    Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:0045745    positive regulation of G-protein coupled receptor protein signaling pathway    Any process that activates or increases the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity.
    GO:0001970    positive regulation of activation of membrane attack complex    Any process that activates, maintains or increases the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:2000427    positive regulation of apoptotic cell clearance    Any process that activates or increases the frequency, rate or extent of apoptotic cell clearance.
    GO:0048639    positive regulation of developmental growth    Any process that activates, maintains or increases the rate of developmental growth.
    GO:0010828    positive regulation of glucose transport    Any process that increases the frequency, rate or extent of glucose transport. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0010884    positive regulation of lipid storage    Any process that increases the rate, frequency or extent of lipid storage. Lipid storage is the accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.
    GO:0050766    positive regulation of phagocytosis    Any process that activates or increases the frequency, rate or extent of phagocytosis.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0001798    positive regulation of type IIa hypersensitivity    Any process that activates or increases the frequency, rate or extent of type IIa hypersensitivity, a type of inflammatory response.
    GO:0010575    positive regulation of vascular endothelial growth factor production    Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0010866    regulation of triglyceride biosynthetic process    Any process that modulates the rate, frequency, or extent of triglyceride biosynthesis. Triglyceride biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triglyceride, any triester of glycerol.
    GO:0032355    response to estradiol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
    GO:0043627    response to estrogen    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics.
    GO:0051384    response to glucocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0032026    response to magnesium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus.
    GO:0032570    response to progesterone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0002507    tolerance induction    A process that directly activates any of the steps required for tolerance, a physiologic state in which the immune system does not react destructively against the components of an organism that harbors it or against antigens that are introduced to it.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain C   (CFAH_HUMAN | P08603)
molecular function
    GO:0043395    heparan sulfate proteoglycan binding    Interacting selectively and non-covalently with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit.
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006957    complement activation, alternative pathway    Any process involved in the activation of any of the steps of the alternative pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CFAH_HUMAN | P086031fhc 1haq 1hcc 1hfh 1hfi 1kov 2bzm 2g7i 2ic4 2jgw 2jgx 2kms 2qfg 2qfh 2rlp 2rlq 2uwn 2v8e 2w80 2w81 2xqw 3gau 3gav 3gaw 3kxv 3kzj 3oxu 3r62 3rj3 3sw0 4ayd 4aye 4ayi 4aym 4b2r 4b2s 4j38 4k12 4ont 4zh1 5o32 5o35
        CO3_HUMAN | P010241c3d 1ghq 1w2s 2a73 2a74 2gox 2i07 2ice 2icf 2noj 2qki 2win 2wy7 2wy8 2xqw 2xwb 2xwj 3d5r 3d5s 3g6j 3l3o 3l5n 3nms 3oed 3ohx 3oxu 3rj3 3t4a 4hw5 4hwj 4i6o 4m76 4ont 4zh1 5fo7 5fo8 5fo9 5foa 5fob 5m6w 5o32 5o35

(-) Related Entries Specified in the PDB File

1fhc C3D AND HEPARIN BINDING COMPLEMENT FACTOR H DOMAINS SCR19-20
1hfh FACTOR H, 15TH AND 16TH C-MODULE PAIR ( NMR, MINIMIZED AVERAGED STRUCTURE)
1ojv DECAY ACCELERATING FACTOR (CD55): THE STRUCTURE OF AN INTACT HUMAN COMPLEMENT REGULATOR.
2a73 HUMAN COMPLEMENT COMPONENT C3
2a74 HUMAN COMPLEMENT COMPONENT C3C
2g7i STRUCTURE OF HUMAN COMPLEMENT FACTOR H CARBOXYL TERMINALDOMAINS 19-20: A BASIS FOR ATYPICAL HEMOLYTIC UREMICSYNDROME
2icf CRIG BOUND TO C3B
2jgw STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD AT RISK VARIENT (402H)
2jgx STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD NOT AT RISK VARIENT ( 402Y)
2rlp NMR STRUCTURE OF CCP MODULES 1-2 OF COMPLEMENT FACTOR H
2rlq NMR STRUCTURE OF CCP MODULES 2-3 OF COMPLEMENT FACTOR H
2v8e CRYSTAL STRUCTURE OF HUMAN COMPLEMENT FACTOR H, SCR DOMAINS 6-8 (H402 RISK VARIANT), IN COMPLEX WITH LIGAND.
2w80 STRUCTURE OF A COMPLEX BETWEEN NEISSERIA MENINGITIDIS FACTOR H BINDING PROTEIN AND CCPS 6-7 OF HUMAN COMPLEMENT FACTOR H
2w81 STRUCTURE OF A COMPLEX BETWEEN NEISSERIA MENINGITIDIS FACTOR H BINDING PROTEIN AND CCPS 6-7 OF HUMAN COMPLEMENT FACTOR H