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(-) Description

Title :  STRUCTURE OF A DESIGNED MENINGOCOCCAL ANTIGEN (FACTOR H BINDING PROTEIN, MUTANT G1) INDUCING BROAD PROTECTIVE IMMUNITY
 
Authors :  E. Malito, G. Spraggon, M. J. Bottomley
Date :  01 Feb 11  (Deposition) - 27 Jul 11  (Release) - 21 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Immune System, Antigen, Epitope, Antibody, Structure-Based Design, Vaccine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Scarselli, B. Arico, B. Brunelli, S. Savino, F. Di Marcello, E. Palumbo, D. Veggi, L. Ciucchi, E. Cartocci, M. J. Bottomley, E. Malito, P. Lo Surdo, M. Comanducci, M. M. Giuliani, F. Cantini, S. Dragonetti, A. Colaprico, F. Doro, P. Giannetti, M. Pallaoro, B. Brogioni, M. Tontini, M. Hilleringmann, V. Nardi-Dei, L. Banci, M. Pizza, R. Rappuoli
Rational Design Of A Meningococcal Antigen Inducing Broad Protective Immunity.
Sci. Transl. Med V. 3 91Ra622011
PubMed-ID: 21753121  |  Reference-DOI: 10.1126/SCITRANSLMED.3002234

(-) Compounds

Molecule 1 - FACTOR H BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET21B
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 73-320
    Mutation: YES
    Organism Scientific: NEISSERIA MENINGITIDIS SEROGROUP B
    Organism Taxid: 122586
    Other Details: THE SEQUENCE OF FHBP CORRESPONDS TO VARIANT 1.1 WITH 23 MUTATIONS FROM VARIANTS 2 AND 3
    Strain: MC58
    Variant: 1.1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2Y7S)

(-) Sites  (0, 0)

(no "Site" information available for 2Y7S)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Y7S)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:30 -Leu A:31
2Asn A:243 -Gly A:244
3Gly B:30 -Leu B:31
4Tyr B:57 -Gly B:58

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Y7S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Y7S)

(-) Exons   (0, 0)

(no "Exon" information available for 2Y7S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:241
 aligned with Q9JXV4_NEIMB | Q9JXV4 from UniProtKB/TrEMBL  Length:320

    Alignment length:242
                                                                                                                                                                                                                                                                          320 
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319| 
         Q9JXV4_NEIMB    80 GLADALTAPLDHKDKGLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQ-   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...........ee.........eeeeee..eeeee....eehhhhh....eeeeeeeeeeee..eeeeeeeeeeeeee...eeeeeeeeeeee.......eeeeeeeeeeeeee....hhhh...-eeeeeeeeee..eeeeeeeeeee....eeeeeee...hhhhh.eeeeeeeee.....eeeeeeeee..eeeeeeeeeee.....eeeeeeee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y7s A  15 GLADALTAPLDHKDKGLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDLGGEHTAFNQLPDG-KAEYRGTAFGSDDAGGKLTYTIDFTKKQGNGKIEHLKSPELNVELASAEIKADGKSHAVILGDVRYGSEEKGSYSLGIFGGRAQEVAGSAEVKTVNGIRHIGLAAKQL 255
                                    24        34        44        54        64        74        84        94       104       114       124       134       144  | |  153       163       173       183       193       203       213       223       233       243       253  
                                                                                                                                                              147 |                                                                                                           
                                                                                                                                                                148                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:240
 aligned with Q9JXV4_NEIMB | Q9JXV4 from UniProtKB/TrEMBL  Length:320

    Alignment length:241
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319 
         Q9JXV4_NEIMB    80 GLADALTAPLDHKDKGLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQ 320
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...........ee.........eeeeee..eeeee....eehhhhh....eeeeeeeeeeee..eeeeeeeeeeeeee...eeeeeeeeeeee.......eeeeeeeeeeeeee....hhhh...-eeeeeeeeee..eeeeeeeeeee....eeeeeee...hhhhh.eeeeeeeee.....eeeeeeeee..eeeeeeeeeee.....eeeeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y7s B  15 GLADALTAPLDHKDKGLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDLGGEHTAFNQLPDG-KAEYRGTAFGSDDAGGKLTYTIDFTKKQGNGKIEHLKSPELNVELASAEIKADGKSHAVILGDVRYGSEEKGSYSLGIFGGRAQEVAGSAEVKTVNGIRHIGLAAKQ 254
                                    24        34        44        54        64        74        84        94       104       114       124       134       144  | |  153       163       173       183       193       203       213       223       233       243       253 
                                                                                                                                                              147 |                                                                                                          
                                                                                                                                                                148
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Y7S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Y7S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2Y7S)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9JXV4_NEIMB | Q9JXV4)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

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  Cis Peptide Bonds
    Asn A:243 - Gly A:244   [ RasMol ]  
    Gly A:30 - Leu A:31   [ RasMol ]  
    Gly B:30 - Leu B:31   [ RasMol ]  
    Tyr B:57 - Gly B:58   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9JXV4_NEIMB | Q9JXV4: 2w80 2w81 2ypv 4ayd 4aye 5t5f

(-) Related Entries Specified in the PDB File

2w80 STRUCTURE OF A COMPLEX BETWEEN NEISSERIA MENINGITIDIS FACTOR H BINDING PROTEIN AND CCPS 6-7 OF HUMAN COMPLEMENT FACTOR H
2w81 STRUCTURE OF A COMPLEX BETWEEN NEISSERIA MENINGITIDIS FACTOR H BINDING PROTEIN AND CCPS 6-7 OF HUMAN COMPLEMENT FACTOR H