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(-) Description

Title :  NEISSERIA MENINGITIDIS FACTOR H BINDING PROTEIN IN COMPLEX WITH MONOCLONAL ANTIBODY JAR5
 
Authors :  E. Malito
Date :  30 Aug 16  (Deposition) - 09 Nov 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.98
Chains :  Asym./Biol. Unit :  A,H,L
Keywords :  Fhbp, Jar5, Epitope Mapping, Monoclonal Antibody, Cooperativity, Neisseria Meningitidis, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Malito, P. Lo Surdo, D. Veggi, L. Santini, H. Stefek, B. Brunelli, E. Luzzi, M. J. Bottomley, P. T. Beernink, M. Scarselli
Neisseria Meningitidis Factor H-Binding Protein Bound To Monoclonal Antibody Jar5: Implications For Antibody Synergy
Biochem. J. V. 473 4699 2016
PubMed-ID: 27784765  |  Reference-DOI: 10.1042/BCJ20160806

(-) Compounds

Molecule 1 - FACTOR H BINDING PROTEIN VARIANT B24
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: FHBP
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 487
    Synonym: FACTOR H BINDING PROTEIN VARIANT B24_001,FACTOR H BINDING PROTEIN VARIANT B24_002,FACTOR H BINDING PROTEIN VARIANT B24_004, FACTOR H BINDING PROTEIN VARIANT B24_005,FACTOR H BINDING PROTEIN VARIANT B24_006,FACTOR H BINDING PROTEIN VARIANT B24_007,FACTOR H BINDING PROTEIN VARIANT B24_008,FACTOR H BINDING PROTEIN VARIANT B24_010,PUTATIVE LIPOPROTEIN
 
Molecule 2 - MONOCLONAL ANTIBODY JAR5 HEAVY CHAIN
    Chains: H
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - MONOCLONAL ANTIBODY JAR5 LIGHT CHAIN
    Chains: L
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : AHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5T5F)

(-) Sites  (0, 0)

(no "Site" information available for 5T5F)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:96
2H:149 -H:204
3L:23 -L:93
4L:139 -L:199

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Phe H:155 -Pro H:156
2Glu H:157 -Pro H:158
3Trp H:197 -Pro H:198
4Tyr L:99 -Pro L:100
5Tyr L:145 -Pro L:146

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T5F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T5F)

(-) Exons   (0, 0)

(no "Exon" information available for 5T5F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.........eeeeee..eeeee....eehhhhh....eeeeeeeeeeee..eeeeeeeeeeeeee...eeeeeeeeeeee.......eeeeeeeeeeeeee...hhhhh....eeeeeeeeee..eeeeeeeeeee....eeeeeee...hhhhh.eeeeeeeee.....eeeeeeeee..eeeeeeeeeee.....eeeeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t5f A  30 GLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTAFQTEQIQDSEHSGKMVAKRQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDAGGKLTYTIDFAAKQGNGKIEHLKSPELNVDLAAADIKPDGKRHAVISGSVLYNQAEKGSYSLGIFGGKAQEVAGSAEVKTVNGIRHIGLAAKQ 255
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249      


Chain H from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...eee.....eeeeeeeee..hhh.eeeeeeee......eeeeee......eee.hhhh..eeeeeehhh.eeeeeee..hhhhheeeeeeeee.......eeeee...eeee.........eeeee....eeeeeeeeeee.....eeee........eeeeeeeee..eeeeeeeeeee.hhhhhh...eeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t5f H   1 QVQMQQPGAELVKPGASVKLSCKASGYTFISYWMHWVKQRPGRGLEWIGRIAPDTGIIYYNEKFKNKATLTVDTPSSTAYMQLNSLTSEDSAVYYCARYLKYDGSTYRFDYWGQGTTLTVSSAKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPWPSETVTCNVAHPASSTKVDKK 218
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     ||146       156       166       176       186       196       206       216  
                                                                                                                                                                 136|                                                                           
                                                                                                                                                                  143                                                                           


Chain L from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeee.....eeeeee.............eeeeee......eeeee...ee.......eeeee...eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee....eeeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5t5f L   1 DIVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLFWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTSFTLRISRVEAEDVGVYYCMQHLEYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 216
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T5F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T5F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T5F)

(-) Gene Ontology  (1, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 5t5f)
 
  Cis Peptide Bonds
    Glu H:157 - Pro H:158   [ RasMol ]  
    Phe H:155 - Pro H:156   [ RasMol ]  
    Trp H:197 - Pro H:198   [ RasMol ]  
    Tyr L:145 - Pro L:146   [ RasMol ]  
    Tyr L:99 - Pro L:100   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q6VRZ6_NEIME | Q6VRZ6: 2kc0
UniProtKB/TrEMBL
        Q6VRZ6_NEIME | Q6VRZ6: 1ys5
        Q9JXV4_NEIMB | Q9JXV4: 2w80 2w81 2y7s 2ypv 4ayd 4aye

(-) Related Entries Specified in the PDB File

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