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3IE2
Biol. Unit 2
Info
Asym.Unit (284 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (74 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H400V MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date
:
22 Jul 09 (Deposition) - 04 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of H400V Mutant Ttha0252 From Thermus Thermophilus Hb8
To Be Published
[
close entry info
]
Hetero Components
(1, 19)
Info
All Hetero Components
1a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BTB
-1
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
SO4
19
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC9 (SOFTWARE)
03: BC4 (SOFTWARE)
04: CC9 (SOFTWARE)
05: DC1 (SOFTWARE)
06: DC2 (SOFTWARE)
07: DC3 (SOFTWARE)
08: DC4 (SOFTWARE)
09: DC5 (SOFTWARE)
10: DC6 (SOFTWARE)
11: DC7 (SOFTWARE)
12: DC8 (SOFTWARE)
13: DC9 (SOFTWARE)
14: EC1 (SOFTWARE)
15: EC2 (SOFTWARE)
16: EC3 (SOFTWARE)
17: EC4 (SOFTWARE)
18: EC5 (SOFTWARE)
19: EC6 (SOFTWARE)
20: EC7 (SOFTWARE)
21: EC8 (SOFTWARE)
22: EC9 (SOFTWARE)
23: FC1 (SOFTWARE)
24: GC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
PRO A:243 , ARG A:244 , ARG B:302
BINDING SITE FOR RESIDUE SO4 A 438
02
AC9
SOFTWARE
LEU A:407 , GLY A:410 , LYS A:411 , ALA A:414 , GLY B:410 , LYS B:411 , ALA B:414
BINDING SITE FOR RESIDUE SO4 A 440
03
BC4
SOFTWARE
HIS A:238 , HIS A:240 , ARG A:241 , ARG B:368
BINDING SITE FOR RESIDUE SO4 A 444
04
CC9
SOFTWARE
ARG B:354
BINDING SITE FOR RESIDUE SO4 B 432
05
DC1
SOFTWARE
ARG B:359 , GLY B:362
BINDING SITE FOR RESIDUE SO4 B 433
06
DC2
SOFTWARE
ARG B:24 , LEU B:129 , GLY B:130
BINDING SITE FOR RESIDUE SO4 B 434
07
DC3
SOFTWARE
ARG B:24
BINDING SITE FOR RESIDUE SO4 B 435
08
DC4
SOFTWARE
ARG B:10 , ARG B:424 , PHE B:425
BINDING SITE FOR RESIDUE SO4 B 436
09
DC5
SOFTWARE
PHE B:223 , ALA B:224 , SER B:313 , GLY B:314
BINDING SITE FOR RESIDUE SO4 B 437
10
DC6
SOFTWARE
PRO B:172 , ASP B:173 , SER B:269 , GLU B:270
BINDING SITE FOR RESIDUE SO4 B 438
11
DC7
SOFTWARE
ARG A:244 , LYS B:298 , HIS B:323 , LYS B:326 , HIS B:327
BINDING SITE FOR RESIDUE SO4 B 439
12
DC8
SOFTWARE
ARG B:302 , PRO B:304 , ARG B:333
BINDING SITE FOR RESIDUE SO4 B 440
13
DC9
SOFTWARE
ARG B:192 , PRO B:193 , ARG B:195
BINDING SITE FOR RESIDUE SO4 B 441
14
EC1
SOFTWARE
PRO B:243 , ARG B:244
BINDING SITE FOR RESIDUE SO4 B 442
15
EC2
SOFTWARE
ARG B:84 , LEU B:88 , ARG B:263
BINDING SITE FOR RESIDUE SO4 B 443
16
EC3
SOFTWARE
ARG B:73
BINDING SITE FOR RESIDUE SO4 B 444
17
EC4
SOFTWARE
HIS B:293 , THR B:294 , ARG B:320
BINDING SITE FOR RESIDUE SO4 B 445
18
EC5
SOFTWARE
ARG B:2 , GLY B:428
BINDING SITE FOR RESIDUE SO4 B 446
19
EC6
SOFTWARE
ARG B:25 , PHE B:47 , ASP B:48
BINDING SITE FOR RESIDUE SO4 B 447
20
EC7
SOFTWARE
HIS B:61 , LEU B:62 , ASP B:63
BINDING SITE FOR RESIDUE SO4 B 448
21
EC8
SOFTWARE
ARG B:368
BINDING SITE FOR RESIDUE SO4 B 449
22
EC9
SOFTWARE
TYR B:189 , PHE B:223 , ARG B:227 , GLY B:340 , TYR B:341 , SER B:378 , GLY B:379 , HIS B:380
BINDING SITE FOR RESIDUE SO4 B 450
23
FC1
SOFTWARE
HIS B:59 , HIS B:61 , HIS B:141 , ASP B:162
BINDING SITE FOR RESIDUE ZN B 451
24
GC5
SOFTWARE
ARG B:266 , GLN B:273 , LEU B:277 , VAL C:265 , ARG C:266 , GLN C:273 , LEU C:277
BINDING SITE FOR RESIDUE SO4 C 444
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ie2a_ (A:)
1b: SCOP_d3ie2b_ (B:)
1c: SCOP_d3ie2c_ (C:)
1d: SCOP_d3ie2d_ (D:)
View:
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(
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Superfamilies
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3ie2a_
A:
1b
d3ie2b_
B:
1c
d3ie2c_
C:
1d
d3ie2d_
D:
[
close SCOP info
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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