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Biol. Unit 2
Info
Asym.Unit (287 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S378Y MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui, Riken S Genomics/Proteomics Initiative (Rsgi)
Date
:
22 Jul 09 (Deposition) - 04 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.73
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of S378Y Mutant Ttha0252 From Thermus Thermophilus Hb8
To Be Published
[
close entry info
]
Hetero Components
(2, 20)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
1c: CITRATE ANION (FLCc)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2bo: SULFATE ION (SO4bo)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
2
SO4
19
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: BC1 (SOFTWARE)
02: CC3 (SOFTWARE)
03: CC7 (SOFTWARE)
04: CC8 (SOFTWARE)
05: CC9 (SOFTWARE)
06: DC1 (SOFTWARE)
07: DC2 (SOFTWARE)
08: DC3 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC5 (SOFTWARE)
11: DC6 (SOFTWARE)
12: DC7 (SOFTWARE)
13: DC8 (SOFTWARE)
14: DC9 (SOFTWARE)
15: EC1 (SOFTWARE)
16: EC2 (SOFTWARE)
17: EC3 (SOFTWARE)
18: EC4 (SOFTWARE)
19: EC5 (SOFTWARE)
20: EC6 (SOFTWARE)
21: EC7 (SOFTWARE)
22: EC8 (SOFTWARE)
23: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
HIS A:238 , HIS A:240 , ARG A:241 , PRO B:366 , ARG B:368
BINDING SITE FOR RESIDUE SO4 A 441
02
CC3
SOFTWARE
LYS A:280 , ASN A:281 , ARG A:284 , HOH A:474 , HIS B:293
BINDING SITE FOR RESIDUE FLC A 452
03
CC7
SOFTWARE
ARG B:24 , LEU B:129 , GLY B:130
BINDING SITE FOR RESIDUE SO4 B 432
04
CC8
SOFTWARE
GLN B:391 , ARG B:416
BINDING SITE FOR RESIDUE SO4 B 433
05
CC9
SOFTWARE
LEU A:415 , ARG B:10 , ARG B:424
BINDING SITE FOR RESIDUE SO4 B 434
06
DC1
SOFTWARE
ARG B:84 , ARG B:263
BINDING SITE FOR RESIDUE SO4 B 435
07
DC2
SOFTWARE
ARG B:192 , ARG B:195
BINDING SITE FOR RESIDUE SO4 B 436
08
DC3
SOFTWARE
GLU A:289 , VAL A:290 , GLU A:292 , GLU B:289 , VAL B:290 , GLU B:292
BINDING SITE FOR RESIDUE SO4 B 437
09
DC4
SOFTWARE
ARG B:354
BINDING SITE FOR RESIDUE SO4 B 438
10
DC5
SOFTWARE
TYR B:189 , PHE B:223 , ARG B:227 , GLY B:340 , TYR B:341 , TYR B:378 , GLY B:379
BINDING SITE FOR RESIDUE SO4 B 439
11
DC6
SOFTWARE
ARG A:244 , LYS B:298 , HIS B:323 , LYS B:326 , HIS B:327
BINDING SITE FOR RESIDUE SO4 B 440
12
DC7
SOFTWARE
GLU B:292 , HIS B:293 , THR B:294 , ARG B:320
BINDING SITE FOR RESIDUE SO4 B 441
13
DC8
SOFTWARE
ARG A:155 , VAL A:431 , ARG B:155 , HOH B:474
BINDING SITE FOR RESIDUE SO4 B 442
14
DC9
SOFTWARE
PRO B:172 , ASP B:173 , SER B:269 , GLU B:270
BINDING SITE FOR RESIDUE SO4 B 443
15
EC1
SOFTWARE
ARG B:368
BINDING SITE FOR RESIDUE SO4 B 444
16
EC2
SOFTWARE
ARG B:24
BINDING SITE FOR RESIDUE SO4 B 445
17
EC3
SOFTWARE
PRO A:394 , PRO B:430
BINDING SITE FOR RESIDUE SO4 B 446
18
EC4
SOFTWARE
PHE B:223 , ALA B:224 , SER B:313 , GLY B:314 , HOH B:473
BINDING SITE FOR RESIDUE SO4 B 447
19
EC5
SOFTWARE
LEU B:387 , LEU B:412
BINDING SITE FOR RESIDUE SO4 B 448
20
EC6
SOFTWARE
ARG B:2 , GLY B:426 , GLY B:428
BINDING SITE FOR RESIDUE SO4 B 449
21
EC7
SOFTWARE
LEU A:407 , LYS A:411 , LEU B:407 , LYS B:411 , ALA B:414
BINDING SITE FOR RESIDUE FLC B 451
22
EC8
SOFTWARE
ASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , ZN B:453
BINDING SITE FOR RESIDUE ZN B 452
23
EC9
SOFTWARE
HIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , ZN B:452
BINDING SITE FOR RESIDUE ZN B 453
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ie0a_ (A:)
1b: SCOP_d3ie0b_ (B:)
1c: SCOP_d3ie0c_ (C:)
1d: SCOP_d3ie0d_ (D:)
View:
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Classes
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(
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Superfamilies
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3ie0a_
A:
1b
d3ie0b_
B:
1c
d3ie0c_
C:
1d
d3ie0d_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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