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2WII
Biol. Unit 1
Info
Asym.Unit (618 KB)
Biol.Unit 1 (607 KB)
Biol.Unit 2 (220 KB)
Biol.Unit 3 (312 KB)
Biol.Unit 4 (91 KB)
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(1)
Title
:
COMPLEMENT C3B IN COMPLEX WITH FACTOR H DOMAINS 1-4
Authors
:
J. Wu, B. J. C. Janssen, P. Gros
Date
:
12 May 09 (Deposition) - 09 Jun 09 (Release) - 04 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Keywords
:
Immune System, Sushi, Secreted, Polymorphism, Glycoprotein, Complement System, Complement Pathway, Immune Response, Innate Immunity, Disease Mutation, Inflammatory Response, Complement Alternate Pathway, Cleavage On Pair Of Basic Residues, Age-Related Macular Degeneration, Regulator Of Complement Activation, Alternative Pathway, Alternative Splicing, Phosphoprotein, Disulfide Bond, Thioester Bond
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wu, Y. Wu, D. Ricklin, B. J. C. Janssen, J. D. Lambris, P. Gros
Structure Of Complement Fragment C3B-Factor H And Implications For Host Protection By Complement Regulators.
Nat. Immunol. V. 10 728 2009
[
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
17
Ligand/Ion
GLYCEROL
4
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:505 , ASP A:532 , VAL A:533 , ASP A:535
BINDING SITE FOR RESIDUE CA A1643
02
AC2
SOFTWARE
ILE B:734 , GLU B:736 , ARG B:841 , GLU B:843 , LYS B:891 , ALA B:893
BINDING SITE FOR RESIDUE GOL B2642
03
AC3
SOFTWARE
PRO A:136 , GLY A:138 , GLN A:161 , ASN A:162
BINDING SITE FOR RESIDUE GOL A1644
04
AC4
SOFTWARE
TRP B:749 , ASN B:752 , ILE B:771 , PHE B:772 , ASP C:72
BINDING SITE FOR RESIDUE GOL B2643
05
AC5
SOFTWARE
ILE B:1498 , LYS B:1500 , TRP B:1605 , VAL B:1606
BINDING SITE FOR RESIDUE GOL B2644
06
AC6
SOFTWARE
LEU A:541 , HOH A:2060 , VAL B:795 , ALA B:796 , ASP B:797
BINDING SITE FOR RESIDUE GOL B2645
07
AC7
SOFTWARE
LEU A:176 , GLU B:953 , HIS B:1327
BINDING SITE FOR RESIDUE GOL B2646
08
AC8
SOFTWARE
SER A:618 , ALA A:633 , GLN A:634 , ARG A:635 , HOH A:2074
BINDING SITE FOR RESIDUE GOL A1645
09
AC9
SOFTWARE
TYR A:224 , ALA A:412 , GLU C:135 , ASN C:136 , CYS C:187
BINDING SITE FOR RESIDUE GOL C1248
10
BC1
SOFTWARE
LYS A:114 , THR A:118 , GLU B:747 , SER B:748
BINDING SITE FOR RESIDUE GOL B2647
11
BC2
SOFTWARE
LEU B:1219 , GLN B:1220 , LYS B:1222 , GLN B:1259 , ASP B:1263 , HOH B:2081
BINDING SITE FOR RESIDUE GOL B2648
12
BC3
SOFTWARE
ARG A:126 , PRO A:168 , TRP B:751 , VAL B:753 , ASN C:97
BINDING SITE FOR RESIDUE GOL B2649
13
BC4
SOFTWARE
ILE B:982 , THR B:984 , LEU B:1026
BINDING SITE FOR RESIDUE GOL B2650
14
BC5
SOFTWARE
ASP B:1273 , SER B:1275 , LYS B:1284 , THR B:1311 , GLU B:1313
BINDING SITE FOR RESIDUE GOL B2651
15
BC6
SOFTWARE
LEU A:455 , ARG A:456 , MET A:457 , ARG A:486 , GLY A:489 , GLN A:490 , ASP A:491
BINDING SITE FOR RESIDUE GOL A1646
16
BC7
SOFTWARE
LYS B:1524 , HIS B:1579 , TRP B:1609 , PRO B:1610 , GLU B:1611
BINDING SITE FOR RESIDUE GOL B2652
17
BC8
SOFTWARE
TRP B:1055 , GLU B:1098 , PRO B:1101 , VAL B:1102 , GLN B:1105
BINDING SITE FOR RESIDUE GOL B2653
18
BC9
SOFTWARE
ARG B:1238
BINDING SITE FOR RESIDUE GOL B2654
19
CC1
SOFTWARE
THR A:19 , ASN A:63 , LEU A:479 , LYS A:480 , ALA A:481 , NAG A:1648
BINDING SITE FOR RESIDUE NAG A1647
20
CC2
SOFTWARE
NAG A:1647 , BMA A:1649 , BMA A:1650 , BMA A:1652
BINDING SITE FOR RESIDUE NAG A1648
21
CC3
SOFTWARE
NAG A:1648 , BMA A:1650 , BMA A:1652
BINDING SITE FOR RESIDUE BMA A1649
22
CC4
SOFTWARE
NAG A:1648 , BMA A:1649 , BMA A:1651
BINDING SITE FOR RESIDUE BMA A1650
23
CC5
SOFTWARE
BMA A:1650
BINDING SITE FOR RESIDUE BMA A1651
24
CC6
SOFTWARE
NAG A:1648 , BMA A:1649
BINDING SITE FOR RESIDUE BMA A1652
25
CC7
SOFTWARE
ASN B:917
BINDING SITE FOR RESIDUE NAG B2655
[
close Site info
]
SAPs(SNPs)/Variants
(25, 25)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_023836 (I44I, chain C, )
02: VAR_025864 (R60G, chain C, )
03: VAR_001983 (R80G, chain A, )
04: VAR_031978 (R109L, chain C, )
05: VAR_070941 (K133Q, chain A, )
06: VAR_001984 (P292L, chain A, )
07: VAR_020262 (E447D, chain A, )
08: VAR_001985 (D527N, chain A, )
09: VAR_063213 (R570Q, chain A, )
10: VAR_063214 (R570W, chain A, )
11: VAR_063654 (F581V, chain A, )
12: VAR_019206 (R841K, chain B, )
13: VAR_063655 (R1020L, chain B, )
14: VAR_063216 (A1072V, chain B, )
15: VAR_063217 (D1093N, chain B, )
16: VAR_063218 (C1136W, chain B, )
17: VAR_063219 (Q1139K, chain B, )
18: VAR_022761 (D1194N, chain B, )
19: VAR_019207 (G1202D, chain B, )
20: VAR_001986 (R1298Q, chain B, )
21: VAR_019208 (I1345T, chain B, )
22: VAR_063220 (H1442D, chain B, )
23: VAR_029792 (Q1499R, chain B, )
24: VAR_029793 (H1579N, chain B, )
25: VAR_029326 (S1597R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023836
V
62
I
CFAH_HUMAN
Polymorphism
800292
C
I
44
I
02
UniProt
VAR_025864
R
78
G
CFAH_HUMAN
Disease (AHUS1)
---
C
R
60
G
03
UniProt
VAR_001983
R
102
G
CO3_HUMAN
Polymorphism
2230199
A
R
80
G
04
UniProt
VAR_031978
R
127
L
CFAH_HUMAN
Disease (CFHD)
---
C
R
109
L
05
UniProt
VAR_070941
K
155
Q
CO3_HUMAN
Disease (ARMD9)
---
A
K
133
Q
06
UniProt
VAR_001984
P
314
L
CO3_HUMAN
Polymorphism
1047286
A
P
292
L
07
UniProt
VAR_020262
E
469
D
CO3_HUMAN
Polymorphism
11569422
A
E
447
D
08
UniProt
VAR_001985
D
549
N
CO3_HUMAN
Disease (C3D)
---
A
D
527
N
09
UniProt
VAR_063213
R
592
Q
CO3_HUMAN
Disease (AHUS5)
---
A
R
570
Q
10
UniProt
VAR_063214
R
592
W
CO3_HUMAN
Disease (AHUS5)
---
A
R
570
W
11
UniProt
VAR_063654
F
603
V
CO3_HUMAN
Disease (AHUS5)
---
A
F
581
V
12
UniProt
VAR_019206
R
863
K
CO3_HUMAN
Polymorphism
11569472
B
R
841
K
13
UniProt
VAR_063655
R
1042
L
CO3_HUMAN
Disease (AHUS5)
---
B
R
1020
L
14
UniProt
VAR_063216
A
1094
V
CO3_HUMAN
Disease (AHUS5)
---
B
A
1072
V
15
UniProt
VAR_063217
D
1115
N
CO3_HUMAN
Disease (AHUS5)
---
B
D
1093
N
16
UniProt
VAR_063218
C
1158
W
CO3_HUMAN
Disease (AHUS5)
---
B
C
1136
W
17
UniProt
VAR_063219
Q
1161
K
CO3_HUMAN
Disease (AHUS5)
---
B
Q
1139
K
18
UniProt
VAR_022761
D
1216
N
CO3_HUMAN
Unclassified
---
B
D
1194
N
19
UniProt
VAR_019207
G
1224
D
CO3_HUMAN
Polymorphism
11569534
B
G
1202
D
20
UniProt
VAR_001986
R
1320
Q
CO3_HUMAN
Disease (C3D)
---
B
R
1298
Q
21
UniProt
VAR_019208
I
1367
T
CO3_HUMAN
Polymorphism
11569541
B
I
1345
T
22
UniProt
VAR_063220
H
1464
D
CO3_HUMAN
Disease (AHUS5)
---
B
H
1442
D
23
UniProt
VAR_029792
Q
1521
R
CO3_HUMAN
Polymorphism
7256789
B
Q
1499
R
24
UniProt
VAR_029793
H
1601
N
CO3_HUMAN
Polymorphism
1803225
B
H
1579
N
25
UniProt
VAR_029326
S
1619
R
CO3_HUMAN
Polymorphism
2230210
B
S
1597
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: SUSHI ()
2: ALPHA_2_MACROGLOBULIN (B:985-993)
3: NTR (B:1496-1639)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAH_HUMAN
19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
3
-
C:65-125
C:126-189
C:190-246
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO3_HUMAN
1007-1015
1
B:985-993
3
NTR
PS50189
NTR domain profile.
CO3_HUMAN
1518-1661
1
B:1496-1639
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wiiC03 (C:127-190)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human (Homo sapiens)
(46)
1a
2wiiC03
C:127-190
[
close CATH info
]
Pfam Domains
(8, 11)
Info
all PFAM domains
1a: PFAM_A2M_comp_2wiiB01 (B:1029-1262)
2a: PFAM_A2M_N_2wiiA01 (A:107-202)
3a: PFAM_A2M_2wiiB02 (B:748-844)
4a: PFAM_NTR_2wiiB03 (B:1512-1622)
5a: PFAM_A2M_N_2_2wiiA02 (A:434-583)
6a: PFAM_A2M_recep_2wiiB04 (B:1376-1471)
7a: PFAM_Sushi_2wiiC01 (C:192-244)
7b: PFAM_Sushi_2wiiC02 (C:192-244)
7c: PFAM_Sushi_2wiiC03 (C:192-244)
7d: PFAM_Sushi_2wiiC04 (C:192-244)
8a: PFAM_Thiol_ester_cl_2wiiB05 (B:977-1007)
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Clans
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(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
A2M_comp
(16)
Homo sapiens (Human)
(13)
1a
A2M_comp-2wiiB01
B:1029-1262
Clan
:
E-set
(290)
Family
:
A2M_N
(14)
Homo sapiens (Human)
(13)
2a
A2M_N-2wiiA01
A:107-202
Clan
:
Ig
(577)
Family
:
A2M
(13)
Homo sapiens (Human)
(12)
3a
A2M-2wiiB02
B:748-844
Clan
:
TIMP-like
(15)
Family
:
NTR
(13)
Homo sapiens (Human)
(13)
4a
NTR-2wiiB03
B:1512-1622
Clan
:
no clan defined [family: A2M_N_2]
(13)
Family
:
A2M_N_2
(13)
Homo sapiens (Human)
(12)
5a
A2M_N_2-2wiiA02
A:434-583
Clan
:
no clan defined [family: A2M_recep]
(13)
Family
:
A2M_recep
(13)
Homo sapiens (Human)
(12)
6a
A2M_recep-2wiiB04
B:1376-1471
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
7a
Sushi-2wiiC01
C:192-244
7b
Sushi-2wiiC02
C:192-244
7c
Sushi-2wiiC03
C:192-244
7d
Sushi-2wiiC04
C:192-244
Clan
:
no clan defined [family: Thiol-ester_cl]
(12)
Family
:
Thiol-ester_cl
(12)
Homo sapiens (Human)
(9)
8a
Thiol-ester_cl-2wiiB05
B:977-1007
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