PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2WII
Biol. Unit 4
Info
Asym.Unit (618 KB)
Biol.Unit 1 (607 KB)
Biol.Unit 2 (220 KB)
Biol.Unit 3 (312 KB)
Biol.Unit 4 (91 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
COMPLEMENT C3B IN COMPLEX WITH FACTOR H DOMAINS 1-4
Authors
:
J. Wu, B. J. C. Janssen, P. Gros
Date
:
12 May 09 (Deposition) - 09 Jun 09 (Release) - 04 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Keywords
:
Immune System, Sushi, Secreted, Polymorphism, Glycoprotein, Complement System, Complement Pathway, Immune Response, Innate Immunity, Disease Mutation, Inflammatory Response, Complement Alternate Pathway, Cleavage On Pair Of Basic Residues, Age-Related Macular Degeneration, Regulator Of Complement Activation, Alternative Pathway, Alternative Splicing, Phosphoprotein, Disulfide Bond, Thioester Bond
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wu, Y. Wu, D. Ricklin, B. J. C. Janssen, J. D. Lambris, P. Gros
Structure Of Complement Fragment C3B-Factor H And Implications For Host Protection By Complement Regulators.
Nat. Immunol. V. 10 728 2009
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
-1
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
NAG
-1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
TRP B:749 , ASN B:752 , ILE B:771 , PHE B:772 , ASP C:72
BINDING SITE FOR RESIDUE GOL B2643
2
AC9
SOFTWARE
TYR A:224 , ALA A:412 , GLU C:135 , ASN C:136 , CYS C:187
BINDING SITE FOR RESIDUE GOL C1248
3
BC3
SOFTWARE
ARG A:126 , PRO A:168 , TRP B:751 , VAL B:753 , ASN C:97
BINDING SITE FOR RESIDUE GOL B2649
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_023836 (I44I, chain C, )
2: VAR_025864 (R60G, chain C, )
3: VAR_031978 (R109L, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023836
V
62
I
CFAH_HUMAN
Polymorphism
800292
C
I
44
I
02
UniProt
VAR_025864
R
78
G
CFAH_HUMAN
Disease (AHUS1)
---
C
R
60
G
04
UniProt
VAR_031978
R
127
L
CFAH_HUMAN
Disease (CFHD)
---
C
R
109
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: SUSHI ()
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAH_HUMAN
19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
3
-
C:65-125
C:126-189
C:190-246
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO3_HUMAN
1007-1015
0
-
3
NTR
PS50189
NTR domain profile.
CO3_HUMAN
1518-1661
0
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wiiC03 (C:127-190)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human (Homo sapiens)
(46)
1a
2wiiC03
C:127-190
[
close CATH info
]
Pfam Domains
(8, 11)
Info
all PFAM domains
1a: PFAM_A2M_comp_2wiiB01 (B:1029-1262)
2a: PFAM_A2M_N_2wiiA01 (A:107-202)
3a: PFAM_A2M_2wiiB02 (B:748-844)
4a: PFAM_NTR_2wiiB03 (B:1512-1622)
5a: PFAM_A2M_N_2_2wiiA02 (A:434-583)
6a: PFAM_A2M_recep_2wiiB04 (B:1376-1471)
7a: PFAM_Sushi_2wiiC01 (C:192-244)
7b: PFAM_Sushi_2wiiC02 (C:192-244)
7c: PFAM_Sushi_2wiiC03 (C:192-244)
7d: PFAM_Sushi_2wiiC04 (C:192-244)
8a: PFAM_Thiol_ester_cl_2wiiB05 (B:977-1007)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
A2M_comp
(16)
Homo sapiens (Human)
(13)
1a
A2M_comp-2wiiB01
B:1029-1262
Clan
:
E-set
(290)
Family
:
A2M_N
(14)
Homo sapiens (Human)
(13)
2a
A2M_N-2wiiA01
A:107-202
Clan
:
Ig
(577)
Family
:
A2M
(13)
Homo sapiens (Human)
(12)
3a
A2M-2wiiB02
B:748-844
Clan
:
TIMP-like
(15)
Family
:
NTR
(13)
Homo sapiens (Human)
(13)
4a
NTR-2wiiB03
B:1512-1622
Clan
:
no clan defined [family: A2M_N_2]
(13)
Family
:
A2M_N_2
(13)
Homo sapiens (Human)
(12)
5a
A2M_N_2-2wiiA02
A:434-583
Clan
:
no clan defined [family: A2M_recep]
(13)
Family
:
A2M_recep
(13)
Homo sapiens (Human)
(12)
6a
A2M_recep-2wiiB04
B:1376-1471
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
7a
Sushi-2wiiC01
C:192-244
7b
Sushi-2wiiC02
C:192-244
7c
Sushi-2wiiC03
C:192-244
7d
Sushi-2wiiC04
C:192-244
Clan
:
no clan defined [family: Thiol-ester_cl]
(12)
Family
:
Thiol-ester_cl
(12)
Homo sapiens (Human)
(9)
8a
Thiol-ester_cl-2wiiB05
B:977-1007
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (618 KB)
Header - Asym.Unit
Biol.Unit 1 (607 KB)
Header - Biol.Unit 1
Biol.Unit 2 (220 KB)
Header - Biol.Unit 2
Biol.Unit 3 (312 KB)
Header - Biol.Unit 3
Biol.Unit 4 (91 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2WII
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help