2JU6 - JenaLib

Title :   SOLID-STATE PROTEIN STRUCTURE DETERMINATION WITH PROTON-DETECTED TRIPLE RESONANCE 3D MAGIC-ANGLE SPINNING NMR SPECTROSCOPY

Authors :   D. H. Zhou, J. J. Shea, A. J. Nieuwkoop, W. Franks, B. J. Wylie, C. Mullen, D. Sandoz, C. M. Rienstra

Date :   15 Aug 07 (Deposition) - 04 Dec 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLID-STATE NMR

Resolution :   NOT APPLICABLE

Chains :   Asym. Unit : X  (10x)

Keywords :   Solid State Nmr, Proton Detection, Magic Angle Spinning, Mas, Ssnmr Structure, Cell Wall, Igg-Binding Protein, Peptidoglycan-Anchor, Secreted, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. H. Zhou, J. J. Shea, A. J. Nieuwkoop, W. T. Franks, B. J. Wylie, C. Mullen, D. Sandoz, C. M. Rienstra
Solid-State Protein-Structure Determination With Proton-Detected Triple-Resonance 3D Magic-Angle-Spinning Nmr Spectroscopy.
Angew. Chem. Int. Ed. Engl. V. 46 8380 2007
PubMed-ID: 17907259 | Reference-DOI: 10.1002/ANIE.200702905
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain X from PDB  Type:PROTEIN  Length:56
 aligned with SPG1_STRSG | P06654 from UniProtKB/Swiss-Prot  Length:448

    Alignment length:56
                                   236       246       256       266       276      
           SPG1_STRSG   227 DTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 282
               SCOP domains -------------------------------------------------------- SCOP domains
               CATH domains 2ju6X00 X:1-56  [code=3.10.20.10, no name defined]       CATH domains
               Pfam domains --IgG_binding_B-2ju6X01 X:3-56                           Pfam domains
         Sec.struct. author .eeeeeee....eeeeeee..hhhhhhhhhhhhhhhh.............eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                 2ju6 X   1 MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE  56
                                    10        20        30        40        50

Chain X from PDB  Type:PROTEIN  Length:56
 aligned with SPG2_STRSG | P19909 from UniProtKB/Swiss-Prot  Length:593

    Alignment length:56
                                   311       321       331       341       351      
           SPG2_STRSG   302 DTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 357
               SCOP domains -------------------------------------------------------- SCOP domains
               CATH domains 2ju6X00 X:1-56  [code=3.10.20.10, no name defined]       CATH domains
               Pfam domains --IgG_binding_B-2ju6X01 X:3-56                           Pfam domains
         Sec.struct. author .eeeeeee....eeeeeee..hhhhhhhhhhhhhhhh.............eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                 2ju6 X   1 MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE  56
                                    10        20        30        40        50

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (5, 10)

Asymmetric Unit(hide GO term definitions)

Chain X (SPG1_STRSG | P06654)

molecular function
	GO:0019864	IgG binding	Interacting selectively and non-covalently with an immunoglobulin of an IgG isotype.
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain X (SPG2_STRSG | P19909)

molecular function
	GO:0019864	IgG binding	Interacting selectively and non-covalently with an immunoglobulin of an IgG isotype.
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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Description