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(-) Description

Title :  CRYSTAL STRUCTURE OF FAB F22-4 IN COMPLEX WITH A SHIGELLA FLEXNERI 2A O-AG DECASACCHARIDE
 
Authors :  F. A. Saul, B. Vulliez-Le-Normand, G. A. Bentley
Date :  17 Jan 08  (Deposition) - 01 Jul 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  O-Antigen, Lps, Shigella Flexneri, Antibody Complex, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Vulliez-Le Normand, F. A. Saul, A. Phalipon, F. Belot, C. Guerreiro, L. A. Mulard, G. A. Bentley
Structures Of Synthetic O-Antigen Fragments From Serotype 2 Shigella Flexneri In Complex With A Protective Monoclonal Antibody
Proc. Natl. Acad. Sci. Usa V. 105 9976 2008
PubMed-ID: 18621718  |  Reference-DOI: 10.1073/PNAS.0801711105

(-) Compounds

Molecule 1 - FAB F22-4 LIGHT CHAIN
    Chains: A, C, E, G
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Strain: BALB/C
 
Molecule 2 - FAB F22-4 HEAVY CHAIN
    Chains: B, D, F, H
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Strain: BALB/C

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 41)

Asymmetric Unit (5, 41)
No.NameCountTypeFull Name
1EAG4Ligand/Ion2-AMINOETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSIDE
2GLC8Ligand/IonALPHA-D-GLUCOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PD1Ligand/IonPALLADIUM ION
5RAM24Ligand/IonALPHA-L-RHAMNOSE
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
1EAG1Ligand/Ion2-AMINOETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSIDE
2GLC2Ligand/IonALPHA-D-GLUCOSE
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PD-1Ligand/IonPALLADIUM ION
5RAM6Ligand/IonALPHA-L-RHAMNOSE
Biological Unit 2 (4, 10)
No.NameCountTypeFull Name
1EAG1Ligand/Ion2-AMINOETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSIDE
2GLC2Ligand/IonALPHA-D-GLUCOSE
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PD-1Ligand/IonPALLADIUM ION
5RAM6Ligand/IonALPHA-L-RHAMNOSE
Biological Unit 3 (4, 10)
No.NameCountTypeFull Name
1EAG1Ligand/Ion2-AMINOETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSIDE
2GLC2Ligand/IonALPHA-D-GLUCOSE
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PD-1Ligand/IonPALLADIUM ION
5RAM6Ligand/IonALPHA-L-RHAMNOSE
Biological Unit 4 (4, 10)
No.NameCountTypeFull Name
1EAG1Ligand/Ion2-AMINOETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSIDE
2GLC2Ligand/IonALPHA-D-GLUCOSE
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PD-1Ligand/IonPALLADIUM ION
5RAM6Ligand/IonALPHA-L-RHAMNOSE

(-) Sites  (41, 41)

Asymmetric Unit (41, 41)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH B:416 , HOH B:540 , HOH B:629BINDING SITE FOR RESIDUE EAG B 310
02AC2SOFTWAREHOH B:362 , HOH B:404 , HOH B:463BINDING SITE FOR RESIDUE RAM B 308
03AC3SOFTWAREHOH B:329 , HOH B:384 , HOH B:416 , HOH B:486BINDING SITE FOR RESIDUE RAM B 307
04AC4SOFTWAREHIS A:27D , HOH B:349 , HOH B:382 , HOH B:431BINDING SITE FOR RESIDUE RAM B 306
05AC5SOFTWAREHIS A:27D , ASN A:91 , ARG A:96 , HOH A:217 , TRP B:33 , ARG B:52 , HOH B:352 , HOH B:392BINDING SITE FOR RESIDUE NAG B 305
06AC6SOFTWAREASN A:91 , HOH A:348 , TRP B:33 , HOH B:492 , HOH B:502BINDING SITE FOR RESIDUE RAM B 303
07AC7SOFTWAREHOH B:392 , HOH B:438 , HOH B:493BINDING SITE FOR RESIDUE RAM B 302
08AC8SOFTWARETRP B:33 , HOH B:345 , HOH B:505 , HOH B:602BINDING SITE FOR RESIDUE RAM B 301
09AC9SOFTWAREASN B:31 , TYR B:32 , TRP B:33 , PRO B:95 , HOH B:313 , HOH B:319 , HOH B:360 , HOH B:424 , HOH B:473 , HOH B:548 , HOH B:602BINDING SITE FOR RESIDUE GLC B 304
10BC1SOFTWAREARG B:52 , TYR B:58 , HOH B:329 , HOH B:349 , HOH B:362 , HOH B:404 , HOH B:466BINDING SITE FOR RESIDUE GLC B 309
11BC2SOFTWAREHOH D:460 , HOH D:493 , HOH D:506BINDING SITE FOR RESIDUE EAG D 310
12BC3SOFTWAREHOH D:423 , HOH D:434 , HOH D:546 , HOH D:547BINDING SITE FOR RESIDUE RAM D 308
13BC4SOFTWAREHOH D:320 , HOH D:362 , HOH D:460 , HOH D:585BINDING SITE FOR RESIDUE RAM D 307
14BC5SOFTWAREHIS C:27D , HOH D:397 , HOH D:421 , HOH D:522 , HOH D:544BINDING SITE FOR RESIDUE RAM D 306
15BC6SOFTWAREHIS C:27D , TYR C:32 , ASN C:91 , ARG C:96 , HOH C:222 , TRP D:33 , ARG D:52 , HOH D:372 , HOH D:440BINDING SITE FOR RESIDUE NAG D 305
16BC7SOFTWAREASN C:91 , TRP D:33 , HOH D:373 , HOH D:543BINDING SITE FOR RESIDUE RAM D 303
17BC8SOFTWAREHOH D:440 , HOH D:445BINDING SITE FOR RESIDUE RAM D 302
18BC9SOFTWARETRP D:33 , HOH D:356 , HOH D:520 , HOH D:568 , HOH D:637BINDING SITE FOR RESIDUE RAM D 301
19CC1SOFTWAREASN D:31 , TYR D:32 , TRP D:33 , PRO D:95 , HOH D:316 , HOH D:317 , HOH D:340 , HOH D:388 , HOH D:392 , HOH D:568BINDING SITE FOR RESIDUE GLC D 304
20CC2SOFTWAREARG D:52 , TYR D:58 , HOH D:320 , HOH D:397 , HOH D:423 , HOH D:434 , HOH D:548BINDING SITE FOR RESIDUE GLC D 309
21CC3SOFTWAREHOH F:430 , HOH F:431 , HOH F:496 , HOH F:579BINDING SITE FOR RESIDUE EAG F 310
22CC4SOFTWAREHOH F:402 , HOH F:467 , HOH F:493 , HOH F:571BINDING SITE FOR RESIDUE RAM F 308
23CC5SOFTWAREHOH E:290 , HOH F:316 , HOH F:430 , HOH F:492BINDING SITE FOR RESIDUE RAM F 307
24CC6SOFTWAREHIS E:27D , HOH F:358 , HOH F:371 , HOH F:389 , HOH F:441 , HOH F:491BINDING SITE FOR RESIDUE RAM F 306
25CC7SOFTWAREHIS E:27D , ASN E:91 , ARG E:96 , HOH E:225 , TRP F:33 , ARG F:52 , HOH F:390 , HOH F:460BINDING SITE FOR RESIDUE NAG F 305
26CC8SOFTWAREASN E:91 , TRP F:33 , HOH F:346 , HOH F:359 , HOH F:478BINDING SITE FOR RESIDUE RAM F 303
27CC9SOFTWAREHOH F:427 , HOH F:479BINDING SITE FOR RESIDUE RAM F 302
28DC1SOFTWARETRP F:33 , HOH F:331 , HOH F:423 , HOH F:487 , HOH F:488 , HOH F:489 , HOH F:518BINDING SITE FOR RESIDUE RAM F 301
29DC2SOFTWAREASN F:31 , TYR F:32 , TRP F:33 , PRO F:95 , HOH F:313 , HOH F:326 , HOH F:343 , HOH F:347 , HOH F:490 , HOH F:550BINDING SITE FOR RESIDUE GLC F 304
30DC3SOFTWAREARG F:52 , TYR F:58 , HOH F:316 , HOH F:358 , HOH F:402 , HOH F:467BINDING SITE FOR RESIDUE GLC F 309
31DC4SOFTWAREHOH H:404 , HOH H:492 , HOH H:538BINDING SITE FOR RESIDUE EAG H 310
32DC5SOFTWAREHOH H:383 , HOH H:456 , HOH H:490 , HOH H:491BINDING SITE FOR RESIDUE RAM H 308
33DC6SOFTWAREHOH H:335 , HOH H:363 , HOH H:404 , HOH H:539BINDING SITE FOR RESIDUE RAM H 307
34DC7SOFTWAREHIS G:27D , HOH G:260 , HOH H:389 , HOH H:440BINDING SITE FOR RESIDUE RAM H 306
35DC8SOFTWARETYR G:32 , ASN G:91 , ARG G:96 , HOH G:238 , TRP H:33 , ARG H:52 , HOH H:352 , HOH H:438BINDING SITE FOR RESIDUE NAG H 305
36DC9SOFTWAREASN G:91 , HOH G:253 , TRP H:33 , HOH H:442 , HOH H:499BINDING SITE FOR RESIDUE RAM H 303
37EC1SOFTWAREHOH H:352 , HOH H:610BINDING SITE FOR RESIDUE RAM H 302
38EC2SOFTWARETRP H:33 , HOH H:349 , HOH H:351 , HOH H:461 , HOH H:470 , HOH H:488BINDING SITE FOR RESIDUE RAM H 301
39EC3SOFTWAREASN H:31 , TYR H:32 , TRP H:33 , PRO H:95 , HOH H:317 , HOH H:322 , HOH H:466 , HOH H:489BINDING SITE FOR RESIDUE GLC H 304
40EC4SOFTWAREARG H:52 , TYR H:58 , HOH H:335 , HOH H:383 , HOH H:440 , HOH H:448 , HOH H:456BINDING SITE FOR RESIDUE GLC H 309
41EC5SOFTWAREASP A:1 , ASP E:1 , HOH E:527BINDING SITE FOR RESIDUE PD E 215

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:23 -A:88
2A:134 -A:194
3B:22 -B:92
4B:142 -B:197
5C:23 -C:88
6C:134 -C:194
7D:22 -D:92
8D:142 -D:197
9E:23 -E:88
10E:134 -E:194
11F:22 -F:92
12F:142 -F:197
13G:23 -G:88
14G:134 -G:194
15H:22 -H:92
16H:142 -H:197

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Leu A:94 -Pro A:95
2Tyr A:140 -Pro A:141
3Pro B:95 -Met B:96
4Phe B:148 -Pro B:149
5Glu B:150 -Pro B:151
6Trp B:190 -Pro B:191
7Leu C:94 -Pro C:95
8Tyr C:140 -Pro C:141
9Pro D:95 -Met D:96
10Phe D:148 -Pro D:149
11Glu D:150 -Pro D:151
12Trp D:190 -Pro D:191
13Leu E:94 -Pro E:95
14Tyr E:140 -Pro E:141
15Pro F:95 -Met F:96
16Phe F:148 -Pro F:149
17Glu F:150 -Pro F:151
18Trp F:190 -Pro F:191
19Leu G:94 -Pro G:95
20Tyr G:140 -Pro G:141
21Pro H:95 -Met H:96
22Phe H:148 -Pro H:149
23Glu H:150 -Pro H:151
24Trp H:190 -Pro H:191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BZ4)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_MOUSE84-90
 
 
 		  4A:192-198
C:192-198
E:192-198
G:192-198
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_MOUSE84-90
 
 
 		  1A:192-198
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_MOUSE84-90
 
 
 		  1-
C:192-198
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_MOUSE84-90
 
 
 		  1-
-
E:192-198
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.IGKC_MOUSE84-90
 
 
 		  1-
-
-
G:192-198

(-) Exons   (0, 0)

(no "Exon" information available for 3BZ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:216
 aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot  Length:106

    Alignment length:216
                                                                                                                                             1                                                                                                      
                                     -         -         -         -         -         -         -         -         -         -         -   |     7        17        27        37        47        57        67        77        87        97      
           IGKC_MOUSE     - -----------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 103
               SCOP domains d3bz4a1 A:1-107 automated matches                                                                               d3bz4a2 A:108-211 automated matches                                                                      SCOP domains
               CATH domains 3bz4A01 A:1-108 Immunoglobulins                                                                                  3bz4A02 A:109-211 Immunoglobulins                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.......ee....eeeeeee............eeeeee.....eeeeee...ee.......eeeee...eeeeee...hhhhheeeeeee...........eee.ee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bz4 A   1 DIVMTQAAFSNPVTLGTSASISCRSSKSLLHSDGITYLYWYLQKPGQSPHLLIYHLSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGIYYCAHNVELPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 211
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205      
                                                     27A||||                                                                                                                                                                                        
                                                      27B|||                                                                                                                                                                                        
                                                       27C||                                                                                                                                                                                        
                                                        27D|                                                                                                                                                                                        
                                                         27E                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bz4B01 B:1-113 Immunoglobulins                                                                                    3bz4B02 B:114-215 Immunoglobulins                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeeee...eeeeeeee.hhhhh..eee.......eeeeeehhh.eeeeee...hhhhheeeeeee...ee...eeeee........eeeee....eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bz4 B   1 EVKVEESGGGLVQPGGSMKISCVVSGLTFSNYWMSWVRQSPEKGLEWVAEIRLKSDNYATYYAESVKGKFTISRDDSKSRLYLQMNNLRTEDTGIYYCFLPMDYWGQGTSVTVSSAKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR 215
                                    10        20        30        40        50  |||   57        67        77     |||84        94 ||    108       118       136       146       156       166       176       186       196       206         
                                                                              52A||                            82A||            96|                       127|                                                                               
                                                                               52B|                             82B|            101                        136                                                                               
                                                                                52C                              82C                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:218
 aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot  Length:106

    Alignment length:218
                                                                                                                                             1                                                                                                        
                                     -         -         -         -         -         -         -         -         -         -         -   |     7        17        27        37        47        57        67        77        87        97        
           IGKC_MOUSE     - -----------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE 105
               SCOP domains d3bz4c1 C:1-107 automated matches                                                                               d3bz4c2 C:108-213 automated matches                                                                        SCOP domains
               CATH domains 3bz4C01 C:1-108 Immunoglobulins                                                                                  3bz4C02 C:109-213 Immunoglobulins                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.......ee....eeeeeee............eeeeee.....eeeeee...ee.......eeeee...eeeeee...hhhhheeeeeee...........eee.ee......eeeee..hhhhhhhheeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bz4 C   1 DIVMTQAAFSNPVTLGTSASISCRSSKSLLHSDGITYLYWYLQKPGQSPHLLIYHLSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGIYYCAHNVELPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE 213
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205        
                                                     27A||||                                                                                                                                                                                          
                                                      27B|||                                                                                                                                                                                          
                                                       27C||                                                                                                                                                                                          
                                                        27D|                                                                                                                                                                                          
                                                         27E                                                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bz4D01 D:1-113 Immunoglobulins                                                                                    3bz4D02 D:114-215 Immunoglobulins                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeeee...eeeeeeee.hhhhh..eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee...ee...eeeee........eeeee....eeeeeeeeeee.....eeee.hhh....eeeeeeeee..eeeeeeeeeee.hhh.....eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bz4 D   1 EVKVEESGGGLVQPGGSMKISCVVSGLTFSNYWMSWVRQSPEKGLEWVAEIRLKSDNYATYYAESVKGKFTISRDDSKSRLYLQMNNLRTEDTGIYYCFLPMDYWGQGTSVTVSSAKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR 215
                                    10        20        30        40        50  |||   57        67        77     |||84        94 ||    108       118       136       146       156       166       176       186       196       206         
                                                                              52A||                            82A||            96|                       127|                                                                               
                                                                               52B|                             82B|            101                        136                                                                               
                                                                                52C                              82C                                                                                                                         


Chain E from PDB  Type:PROTEIN  Length:216
 aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot  Length:106

    Alignment length:216
                                                                                                                                             1                                                                                                      
                                     -         -         -         -         -         -         -         -         -         -         -   |     7        17        27        37        47        57        67        77        87        97      
           IGKC_MOUSE     - -----------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 103
               SCOP domains d3bz4e1 E:1-107 automated matches                                                                               d3bz4e2 E:108-211 automated matches                                                                      SCOP domains
               CATH domains 3bz4E01 E:1-108 Immunoglobulins                                                                                  3bz4E02 E:109-211 Immunoglobulins                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.......ee....eeeeeee............eeeeee.....eeeeee...ee.......eeeee...eeeeee...hhhhheeeeeee...........eee.ee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bz4 E   1 DIVMTQAAFSNPVTLGTSASISCRSSKSLLHSDGITYLYWYLQKPGQSPHLLIYHLSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGIYYCAHNVELPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 211
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205      
                                                     27A||||                                                                                                                                                                                        
                                                      27B|||                                                                                                                                                                                        
                                                       27C||                                                                                                                                                                                        
                                                        27D|                                                                                                                                                                                        
                                                         27E                                                                                                                                                                                        


Chain F from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bz4F01 F:1-113 Immunoglobulins                                                                                    3bz4F02 F:114-215 Immunoglobulins                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeeee...eeeeeeee.hhhhh..eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee...ee...eeeee........eeeee....eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.hhh.....eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bz4 F   1 EVKVEESGGGLVQPGGSMKISCVVSGLTFSNYWMSWVRQSPEKGLEWVAEIRLKSDNYATYYAESVKGKFTISRDDSKSRLYLQMNNLRTEDTGIYYCFLPMDYWGQGTSVTVSSAKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR 215
                                    10        20        30        40        50  |||   57        67        77     |||84        94 ||    108       118       136       146       156       166       176       186       196       206         
                                                                              52A||                            82A||            96|                       127|                                                                               
                                                                               52B|                             82B|            101                        136                                                                               
                                                                                52C                              82C                                                                                                                         


Chain G from PDB  Type:PROTEIN  Length:216
 aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot  Length:106

    Alignment length:216
                                                                                                                                             1                                                                                                      
                                     -         -         -         -         -         -         -         -         -         -         -   |     7        17        27        37        47        57        67        77        87        97      
           IGKC_MOUSE     - -----------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 103
               SCOP domains d3bz4g1 G:1-107 automated matches                                                                               d3bz4g2 G:108-211 automated matches                                                                      SCOP domains
               CATH domains 3bz4G01 G:1-108 Immunoglobulins                                                                                  3bz4G02 G:109-211 Immunoglobulins                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.......ee....eeeeeee............eeeeee.....eeeeee...ee.......eeeee...eeeeee...hhhhheeeeeee...........eee.ee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bz4 G   1 DIVMTQAAFSNPVTLGTSASISCRSSKSLLHSDGITYLYWYLQKPGQSPHLLIYHLSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGIYYCAHNVELPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 211
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205      
                                                     27A||||                                                                                                                                                                                        
                                                      27B|||                                                                                                                                                                                        
                                                       27C||                                                                                                                                                                                        
                                                        27D|                                                                                                                                                                                        
                                                         27E                                                                                                                                                                                        


Chain H from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bz4H01 H:1-113 Immunoglobulins                                                                                    3bz4H02 H:114-215 Immunoglobulins                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeeee...eeeeeeee.hhhhh..eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee...ee...eeeee........eeeee....eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bz4 H   1 EVKVEESGGGLVQPGGSMKISCVVSGLTFSNYWMSWVRQSPEKGLEWVAEIRLKSDNYATYYAESVKGKFTISRDDSKSRLYLQMNNLRTEDTGIYYCFLPMDYWGQGTSVTVSSAKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR 215
                                    10        20        30        40        50  |||   57        67        77     |||84        94 ||    108       118       136       146       156       166       176       186       196       206         
                                                                              52A||                            82A||            96|                       127|                                                                               
                                                                               52B|                             82B|            101                        136                                                                               
                                                                                52C                              82C
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 16)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Immunoglobulins (2282)
(-)
Mouse (Mus musculus) (152)
1a3bz4C02C:109-213
1b3bz4B02B:114-215
1c3bz4D02D:114-215
1d3bz4F02F:114-215
1e3bz4H02H:114-215
1f3bz4A01A:1-108
1g3bz4C01C:1-108
1h3bz4E01E:1-108
1i3bz4G01G:1-108
1j3bz4B01B:1-113
1k3bz4D01D:1-113
1l3bz4F01F:1-113
1m3bz4H01H:1-113
1n3bz4A02A:109-211
1o3bz4E02E:109-211
1p3bz4G02G:109-211

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BZ4)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (IGKC_MOUSE | P01837)
molecular function
    GO:0003823    antigen binding    Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.
    GO:0034987    immunoglobulin receptor binding    Interacting selectively and non-covalently with one or more specific sites on an immunoglobulin receptor molecule.
biological process
    GO:0030183    B cell differentiation    The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity.
    GO:0050853    B cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0006911    phagocytosis, engulfment    The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis.
    GO:0006910    phagocytosis, recognition    The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell.
    GO:0050871    positive regulation of B cell activation    Any process that activates or increases the frequency, rate or extent of B cell activation.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0042571    immunoglobulin complex, circulating    An immunoglobulin complex that is secreted into extracellular space and found in mucosal areas or other tissues or circulating in the blood or lymph. In its canonical form, a circulating immunoglobulin complex is composed of two identical heavy chains and two identical light chains, held together by disulfide bonds. Some forms of are polymers of the basic structure and contain additional components such as J-chain and the secretory component.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  3bz4
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  IGKC_MOUSE | P01837
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IGKC_MOUSE | P01837: 15c8 1a0q 1a3l 1ahw 1ai1 1aif 1c12 1cf8 1cfn 1cfq 1cfs 1cft 1cic 1ck0 1ct8 1dqj 1dqm 1dqq 1e4w 1e4x 1ehl 1emt 1f11 1fai 1fbi 1fdl 1fe8 1fgn 1fj1 1fl3 1fns 1frg 1fsk 1gpo 1hh6 1hh9 1hi6 1i8m 1iai 1igy 1jnl 1jnn 1jrh 1k4c 1k4d 1kb5 1kc5 1kcr 1kcs 1kcu 1kcv 1ken 1kno 1lo0 1mf2 1mh5 1mlb 1mlc 1n5y 1n6q 1nby 1nbz 1ndg 1ndm 1oak 1ob1 1orq 1ors 1osp 1ots 1ott 1otu 1p2c 1p7k 1psk 1q9o 1q9w 1qgc 1r0a 1r24 1r3i 1r3j 1r3k 1r3l 1rih 1ruq 1rur 1s5h 1seq 1t03 1t4k 1ub5 1ub6 1uwx 1xf2 1xf3 1xf4 1xgp 1xgq 1xgu 25c8 2a6d 2a6k 2adf 2adj 2ajs 2aju 2ajv 2ajx 2ajy 2ajz 2ak1 2bob 2boc 2ck0 2f19 2fr4 2g5b 2h8p 2hg5 2hrp 2mpa 2nr6 2q76 2r1w 2r1y 2r23 2r2b 2uyl 2v17 2v7h 2vc2 2vdk 2vdl 2vdm 2vdn 2vdo 2vdp 2vdq 2vdr 2vl5 2vq1 2vwe 2w60 2w65 2w9d 2w9e 2z91 2z92 2z93 2zjs 35c8 3bae 3bgf 3bkc 3bkj 3bkm 3bpc 3bqu 3bsz 3bt2 3c5s 3c6s 3cfb 3cfc 3cfd 3cfe 3ck0 3cle 3clf 3cmo 3cvh 3cvi 3d9a 3ejz 3eot 3f7v 3f7y 3fb6 3hfm 4kk5 4kk8 4qnp 4zxb 6fab

(-) Related Entries Specified in the PDB File

3c5s MONOCLONAL FAB F22-4 SPECIFIC FOR SHIGELLA FLEXNERI 2A O-AG
3c6s FAB F22-4 IN COMPLEX WITH A SHIGELLA FLEXNERI 2A O-AG PENTADECASACCHARIDE