Chain A from PDB Type:PROTEIN Length:216
aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot Length:106
Alignment length:216
1
- - - - - - - - - - - | 8 18 28 38 48 58 68 78 88 98
IGKC_MOUSE - ----------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 104
SCOP domains d1f11a1 A:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa d1f11a2 A:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1f11A01 A:1-108 Immunoglobulins 1f11A02 A:109-212 Immunoglobulins CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeee..eeeee....eeeeeee...........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC -------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1f11 A 1 DMVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYVASNLKSGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
10 20 27C| 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206
27A|||
27B||
27C|
27D
Chain A from PDB Type:PROTEIN Length:216
aligned with KV3AD_MOUSE | P01665 from UniProtKB/Swiss-Prot Length:111
Alignment length:216
111
10 20 30 40 50 60 70 80 90 100 110| - - - - - - - - - -
KV3AD_MOUSE 1 DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIK--------------------------------------------------------------------------------------------------------- -
SCOP domains d1f11a1 A:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa d1f11a2 A:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1f11A01 A:1-108 Immunoglobulins 1f11A02 A:109-212 Immunoglobulins CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeee..eeeee....eeeeeee...........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1f11 A 1 DMVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYVASNLKSGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
10 20 27C| 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206
27A|||
27B||
27C|
27D
Chain B from PDB Type:PROTEIN Length:218
aligned with Q65ZR6_MOUSE | Q65ZR6 from UniProtKB/TrEMBL Length:134
Alignment length:218
118
117 | 134
27 37 47 57 67 77 87 97 107 117 | 125 |- - - - - - - - - -
Q65ZR6_MOUSE 18 EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYMKWVKQSPGKSLEWIGDINPNNGGTSYNQKFKGKATLTVDKSSSTAYMQLNSLTSEDSAVYYCARDY--SYVFDYWGQGTTLTVSS--------------------------------------------------------------------------------------------------- -
SCOP domains d1f11b1 B:1-113 Immunoglobulin heavy chain variable domain, VH d1f11b2 B:114-227 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1f11B01 B:1-113 Immunoglobulins 1f11B02 B:114-227 Immunoglobulins CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee...eee.....eeeeeeee........eeeeee.....eeeeeeee....eeee.hhh...eeeeeehhh.eeeeee...hhhhheeeeeee.........ee...eeeee........eeeee...........eeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeee..hhhhhh..eeeeeehhhheeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1f11 B 1 EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYMKWVKQSHGKSLEWIGDINPNNGGTGYNQKFKGKATLTVDKSSSTAYMQLNSLTSEDSAVYYCANDYGSTYGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVP 227
10 20 30 40 50 | 59 69 79 ||| 86 96 || 104 114 124 ||136 146 157| 172 184 194 |||| 207 217 ||
52A 82A|| 100A| 130| 154||| 169| 180| 196||| 223|
82B| 100B 133 156|| 171 183 199|| 226
82C 157| 200|
162 202
Chain B from PDB Type:PROTEIN Length:218
aligned with Q9D8L4_MOUSE | Q9D8L4 from UniProtKB/TrEMBL Length:473
Alignment length:223
119 212
118 | 211 |
29 39 49 59 69 79 89 99 109 |-| 128 138 148 158 168 178 188 198 208 | | 217 227 237
Q9D8L4_MOUSE 20 QVQLKQSGAELVKPGASVKISCKASGYTFTDYYINWVKQRPGQGLEWIGKIGPGSGSTYYNEKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYFCARS-GYDYDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSN-TWPSQTITCNVAHPASSTKVDKKIEPRVP 240
SCOP domains d1f11b1 B:1-113 Immunoglobulin heavy chain variable domain, VH d1f11b2 B:114-227 Immunoglobulin heavy chain gamma constant domain 1, CH1-g amma SCOP domains
CATH domains 1f11B01 B:1-113 Immunoglobulins 1f11B02 B:114-227 Immunoglobulins CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee...eee.....eeeeeeee........eeeeee.....eeeeeeee....eeee.hhh...eeeeeehhh.eeeeee...hhhhheeeeeee.......-..ee...eeeee........eeeee...........eeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeee..hhh-hhh..eeeeeehhhheeeeee.---.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1f11 B 1 EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYMKWVKQSHGKSLEWIGDINPNNGGTGYNQKFKGKATLTVDKSSSTAYMQLNSLTSEDSAVYYCANDYGSTYG-FAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI---VP 227
10 20 30 40 50 | 59 69 79 ||| 86 96 | |103 113 123 |135 145 156|| 171 183 193 ||| |205 215 | - |
52A 82A|| 100A | 130| 154||| 169| 180| 196|| | 223 226
82B| 100B 133 156|| 171 183 199| |
82C 157| 200 |
162 202
Chain C from PDB Type:PROTEIN Length:216
aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot Length:106
Alignment length:216
1
- - - - - - - - - - - | 8 18 28 38 48 58 68 78 88 98
IGKC_MOUSE - ----------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 104
SCOP domains d1f11c1 C:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa d1f11c2 C:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1f11C01 C:1-108 Immunoglobulins 1f11C02 C:109-211 Immunoglobulins - CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeee..eeeee....eeeeeee....ee..ee.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC -------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1f11 C 1 DMVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYVASNLKSGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
10 20 27C| 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206
27A|||
27B||
27C|
27D
Chain C from PDB Type:PROTEIN Length:216
aligned with KV3AD_MOUSE | P01665 from UniProtKB/Swiss-Prot Length:111
Alignment length:216
111
10 20 30 40 50 60 70 80 90 100 110| - - - - - - - - - -
KV3AD_MOUSE 1 DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIK--------------------------------------------------------------------------------------------------------- -
SCOP domains d1f11c1 C:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa d1f11c2 C:108-212 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1f11C01 C:1-108 Immunoglobulins 1f11C02 C:109-211 Immunoglobulins - CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeee..eeeee....eeeeeee....ee..ee.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1f11 C 1 DMVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYVASNLKSGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
10 20 27C| 36 46 56 66 76 86 96 106 116 126 136 146 156 166 176 186 196 206
27A|||
27B||
27C|
27D
Chain D from PDB Type:PROTEIN Length:218
aligned with Q65ZR6_MOUSE | Q65ZR6 from UniProtKB/TrEMBL Length:134
Alignment length:218
118
117 | 134
27 37 47 57 67 77 87 97 107 117 | 125 |- - - - - - - - - -
Q65ZR6_MOUSE 18 EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYMKWVKQSPGKSLEWIGDINPNNGGTSYNQKFKGKATLTVDKSSSTAYMQLNSLTSEDSAVYYCARDY--SYVFDYWGQGTTLTVSS--------------------------------------------------------------------------------------------------- -
SCOP domains d1f11d1 D:1-113 Immunoglobulin heavy chain variable domain, VH d1f11d2 D:114-227 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1f11D01 D:1-113 Immunoglobulins 1f11D02 D:114-227 Immunoglobulins CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeeee....eeee.hhh...eeeeeehhh.eeeeee...hhhhheeeeeee.........ee...eeeee........eeeee...........eeeeeeeeee.....eeee.hhh.....ee...eee..eeeeeeeeee..hhhhhh..eeeeeehhhheeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1f11 D 1 EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYMKWVKQSHGKSLEWIGDINPNNGGTGYNQKFKGKATLTVDKSSSTAYMQLNSLTSEDSAVYYCANDYGSTYGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVP 227
10 20 30 40 50 | 59 69 79 ||| 86 96 || 104 114 124 ||136 146 157| 172 184 194 |||| 207 217 ||
52A 82A|| 100A| 130| 154||| 169| 180| 196||| 223|
82B| 100B 133 156|| 171 183 199|| 226
82C 157| 200|
162 202
Chain D from PDB Type:PROTEIN Length:218
aligned with Q9D8L4_MOUSE | Q9D8L4 from UniProtKB/TrEMBL Length:473
Alignment length:223
119 212
118 | 211 |
29 39 49 59 69 79 89 99 109 |-| 128 138 148 158 168 178 188 198 208 | | 217 227 237
Q9D8L4_MOUSE 20 QVQLKQSGAELVKPGASVKISCKASGYTFTDYYINWVKQRPGQGLEWIGKIGPGSGSTYYNEKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYFCARS-GYDYDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSN-TWPSQTITCNVAHPASSTKVDKKIEPRVP 240
SCOP domains d1f11d1 D:1-113 Immunoglobulin heavy chain variable domain, VH d1f11d2 D:114-227 Immunoglobulin heavy chain gamma constant domain 1, CH1-g amma SCOP domains
CATH domains 1f11D01 D:1-113 Immunoglobulins 1f11D02 D:114-227 Immunoglobulins CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeeee....eeee.hhh...eeeeeehhh.eeeeee...hhhhheeeeeee.......-..ee...eeeee........eeeee...........eeeeeeeeee.....eeee.hhh.....ee...eee..eeeeeeeeee..hhh-hhh..eeeeeehhhheeeeee.---.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1f11 D 1 EVQLQQSGPELVKPGASVKMSCKASGYTFTDYYMKWVKQSHGKSLEWIGDINPNNGGTGYNQKFKGKATLTVDKSSSTAYMQLNSLTSEDSAVYYCANDYGSTYG-FAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI---VP 227
10 20 30 40 50 | 59 69 79 ||| 86 96 | |103 113 123 |135 145 156|| 171 183 193 ||| |205 215 | - |
52A 82A|| 100A | 130| 154||| 169| 180| 196|| | 223 226
82B| 100B 133 156|| 171 183 199| |
82C 157| 200 |
162 202
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |