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1OB1
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A FAB COMPLEX WHITH PLASMODIUM FALCIPARUM MSP1-19
Authors
:
J. C. Pizarro, V. Chitarra, D. Verger, I. Holm, S. Petres, S. Dartville, S. Longacre, G. A. Bentley
Date
:
22 Jan 03 (Deposition) - 01 May 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Immune System, Immunoglobulin/Complex, Immunoglobulin, Antibody Fab Fragment, Msp1-19, Egf-Like Domain, Surface Antigen, Malaria Vaccine Component
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Pizarro, V. Chitarra, D. Verger, I. Holm, S. Petres, S. Dartville F. Nato, S. Longacre, G. A. Bentley
Crystal Structure Of A Fab Complex Formed With Pfmsp1-19, The C-Terminal Fragment Of Merozoite Surface Protein 1 From Plasmodium Falciparum: A Malaria Vaccine Candidate
J. Mol. Biol. V. 328 1091 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
1b: CACODYLATE ION (CACb)
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Label:
No.
Name
Count
Type
Full Name
1
CAC
2
Ligand/Ion
CACODYLATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN F:36
BINDING SITE FOR RESIDUE CAC F1097
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:191-197,D:191-197)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
2
A:191-197
D:191-197
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 12)
Info
All SCOP Domains
1a: SCOP_d1ob1b2 (B:114-212)
1b: SCOP_d1ob1e2 (E:114-212)
2a: SCOP_d1ob1a2 (A:107-213)
2b: SCOP_d1ob1d2 (D:107-213)
3a: SCOP_d1ob1b1 (B:1-113)
3b: SCOP_d1ob1e1 (E:1-113)
4a: SCOP_d1ob1a1 (A:1-106A)
4b: SCOP_d1ob1d1 (D:1-106A)
5a: SCOP_d1ob1c1 (C:1-45)
5b: SCOP_d1ob1c2 (C:46-96)
5c: SCOP_d1ob1f1 (F:1-45)
5d: SCOP_d1ob1f2 (F:46-97)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1ob1b2
B:114-212
1b
d1ob1e2
E:114-212
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1ob1a2
A:107-213
2b
d1ob1d2
D:107-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(34)
3a
d1ob1b1
B:1-113
3b
d1ob1e1
E:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
(13)
4a
d1ob1a1
A:1-106A
4b
d1ob1d1
D:1-106A
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
Merozoite surface protein 1 (MSP-1)
(8)
Protein domain
:
Merozoite surface protein 1 (MSP-1)
(8)
Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
(3)
5a
d1ob1c1
C:1-45
5b
d1ob1c2
C:46-96
5c
d1ob1f1
F:1-45
5d
d1ob1f2
F:46-97
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1ob1C01 (C:1-44)
1b: CATH_1ob1F01 (F:1-44)
1c: CATH_1ob1C02 (C:45-96)
1d: CATH_1ob1F02 (F:45-97)
2a: CATH_1ob1A02 (A:108-210)
2b: CATH_1ob1D02 (D:108-210)
2c: CATH_1ob1A01 (A:1-107)
2d: CATH_1ob1D01 (D:1-107)
2e: CATH_1ob1B02 (B:114-212)
2f: CATH_1ob1E02 (E:114-212)
2g: CATH_1ob1B01 (B:1-113)
2h: CATH_1ob1E01 (E:1-113)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Mouse (Mus musculus)
(6)
1a
1ob1C01
C:1-44
1b
1ob1F01
F:1-44
1c
1ob1C02
C:45-96
1d
1ob1F02
F:45-97
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
2a
1ob1A02
A:108-210
2b
1ob1D02
D:108-210
2c
1ob1A01
A:1-107
2d
1ob1D01
D:1-107
2e
1ob1B02
B:114-212
2f
1ob1E02
E:114-212
2g
1ob1B01
B:1-113
2h
1ob1E01
E:1-113
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (168 KB)
Header - Asym.Unit
Biol.Unit 1 (81 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
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