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(-) Description

Title :  RUBISCO FROM CHLAMYDOMONAS REINHARDTII
 
Authors :  T. C. Taylor, R. J. Spreitzer, I. Andersson
Date :  09 Aug 01  (Deposition) - 24 Oct 01  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,C,E,G,I,K,M,O
Biol. Unit 1:  A,C,E,G,I,K,M,O  (2x)
Keywords :  Lyase, Rubisco, Photosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Taylor, A. Backlund, K. Bjorhall, R. J. Spreitzer, I. Andersson
First Crystal Structure Of Rubisco From A Green Alga, Chlamydomonas Reinhardtii.
J. Biol. Chem. V. 276 48159 2001
PubMed-ID: 11641402  |  Reference-DOI: 10.1074/JBC.M107765200

(-) Compounds

Molecule 1 - RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN
    Chains: A, C, E, G
    EC Number: 4.1.1.39
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055
    Synonym: RUBISCO LARGE SUBUNIT
 
Molecule 2 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
    Chains: I, K, M, O
    EC Number: 4.1.1.39
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055
    Synonym: RUBISCO SMALL SUBUNIT 1

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ACEGIKMO
Biological Unit 1 (2x): ACEGIKMO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 65)

Asymmetric Unit (7, 65)
No.NameCountTypeFull Name
1CAP4Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2EDO33Ligand/Ion1,2-ETHANEDIOL
3HYP8Mod. Amino Acid4-HYDROXYPROLINE
4KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
5MG4Ligand/IonMAGNESIUM ION
6MME4Mod. Amino AcidN-METHYL METHIONINE
7SMC8Mod. Amino AcidS-METHYLCYSTEINE
Biological Unit 1 (6, 122)
No.NameCountTypeFull Name
1CAP8Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2EDO66Ligand/Ion1,2-ETHANEDIOL
3HYP16Mod. Amino Acid4-HYDROXYPROLINE
4KCX8Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
5MG-1Ligand/IonMAGNESIUM ION
6MME8Mod. Amino AcidN-METHYL METHIONINE
7SMC16Mod. Amino AcidS-METHYLCYSTEINE

(-) Sites  (41, 41)

Asymmetric Unit (41, 41)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:1477BINDING SITE FOR RESIDUE MG A1476
02AC2SOFTWARELYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , CAP C:1477BINDING SITE FOR RESIDUE MG C1476
03AC3SOFTWARELYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , CAP E:1477BINDING SITE FOR RESIDUE MG E1476
04AC4SOFTWAREKCX G:201 , ASP G:203 , GLU G:204 , CAP G:1477BINDING SITE FOR RESIDUE MG G1476
05AC5SOFTWAREGLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , THR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:1476 , HOH A:2153 , HOH A:2443 , HOH A:2444 , HOH A:2445 , HOH A:2446 , HOH A:2447 , HOH A:2448BINDING SITE FOR RESIDUE CAP A1477
06AC6SOFTWARETYR A:24 , GLY A:64 , THR A:68 , VAL A:69 , ASP A:72 , LEU A:77 , HOH A:2449 , HOH A:2450 , HOH A:2451BINDING SITE FOR RESIDUE EDO A1478
07AC7SOFTWAREVAL A:17 , LYS A:18 , THR A:65 , TRP A:66 , THR A:67 , THR A:68 , HOH A:2451 , HOH A:2452BINDING SITE FOR RESIDUE EDO A1479
08AC8SOFTWAREGLU A:52 , HOH A:2453 , HOH A:2454 , HOH A:2455BINDING SITE FOR RESIDUE EDO A1480
09AC9SOFTWAREGLY A:47 , VAL A:48 , PRO A:49 , GLU A:52 , HOH A:2022 , HOH A:2455 , HOH A:2456 , HOH A:2457BINDING SITE FOR RESIDUE EDO A1481
10BC1SOFTWARELYS A:466 , PHE A:467 , GLU A:468 , PHE A:469 , HOH A:2453 , HOH A:2458BINDING SITE FOR RESIDUE EDO A1482
11BC2SOFTWAREHIS A:298 , PHE A:311 , GLU A:336 , ASP A:473 , HOH A:2286 , HOH A:2310 , HOH A:2459 , HOH A:2460BINDING SITE FOR RESIDUE EDO A1483
12BC3SOFTWARELEU A:270 , HOH A:2461BINDING SITE FOR RESIDUE EDO A1484
13BC4SOFTWARETHR C:173 , LYS C:175 , LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , MG C:1476 , HOH C:2453 , HOH C:2454 , HOH C:2455 , HOH C:2456 , HOH C:2457 , HOH C:2458 , GLU G:60 , THR G:65 , TRP G:66 , ASN G:123 , HOH G:2174BINDING SITE FOR RESIDUE CAP C1477
14BC5SOFTWARETYR C:24 , GLY C:64 , THR C:68 , VAL C:69 , ASP C:72 , LEU C:77 , EDO C:1479 , HOH C:2459 , HOH C:2460 , HOH C:2461BINDING SITE FOR RESIDUE EDO C1478
15BC6SOFTWAREGLY C:16 , VAL C:17 , LYS C:18 , THR C:65 , TRP C:66 , THR C:67 , THR C:68 , EDO C:1478 , HOH C:2043 , HOH C:2461BINDING SITE FOR RESIDUE EDO C1479
16BC7SOFTWAREGLU C:52 , HOH C:2462 , HOH C:2463BINDING SITE FOR RESIDUE EDO C1480
17BC8SOFTWARELYS C:466 , PHE C:467 , GLU C:468 , PHE C:469 , HOH C:2464 , HOH G:2470BINDING SITE FOR RESIDUE EDO C1481
18BC9SOFTWAREHIS C:298 , PHE C:311 , GLU C:336 , ASP C:473 , HOH C:2286 , HOH C:2309 , HOH C:2465 , HOH C:2466BINDING SITE FOR RESIDUE EDO C1482
19CC1SOFTWAREGLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:1476 , HOH E:2161 , HOH E:2469 , HOH E:2470 , HOH E:2471 , HOH E:2472 , HOH E:2473 , HOH E:2474BINDING SITE FOR RESIDUE CAP E1477
20CC2SOFTWARETYR E:24 , GLY E:64 , THR E:68 , VAL E:69 , ASP E:72 , LEU E:77 , HOH E:2475 , HOH E:2476 , HOH E:2478BINDING SITE FOR RESIDUE EDO E1478
21CC3SOFTWAREVAL E:17 , LYS E:18 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , HOH E:2477 , HOH E:2478BINDING SITE FOR RESIDUE EDO E1479
22CC4SOFTWAREGLU E:52 , EDO E:1481 , HOH E:2479 , HOH E:2480 , HOH E:2483BINDING SITE FOR RESIDUE EDO E1480
23CC5SOFTWAREGLY E:47 , VAL E:48 , PRO E:49 , GLU E:52 , EDO E:1480 , HOH E:2018 , HOH E:2481 , HOH E:2482 , HOH E:2483BINDING SITE FOR RESIDUE EDO E1481
24CC6SOFTWARELYS E:466 , PHE E:467 , GLU E:468 , PHE E:469 , HOH E:2480 , HOH E:2484BINDING SITE FOR RESIDUE EDO E1482
25CC7SOFTWAREHIS E:298 , PHE E:311 , GLU E:336 , ASP E:473 , HOH E:2301 , HOH E:2325 , HOH E:2485 , HOH E:2486BINDING SITE FOR RESIDUE EDO E1483
26CC8SOFTWARELEU E:270 , HOH E:2487BINDING SITE FOR RESIDUE EDO E1484
27CC9SOFTWAREGLU C:60 , THR C:65 , TRP C:66 , ASN C:123 , HOH C:2150 , THR G:173 , LYS G:175 , LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , MG G:1476 , HOH G:2458 , HOH G:2459 , HOH G:2460 , HOH G:2461 , HOH G:2462 , HOH G:2463BINDING SITE FOR RESIDUE CAP G1477
28DC1SOFTWARETYR G:24 , GLY G:64 , THR G:68 , VAL G:69 , ASP G:72 , LEU G:77 , HOH G:2464 , HOH G:2465 , HOH G:2466BINDING SITE FOR RESIDUE EDO G1478
29DC2SOFTWAREVAL G:17 , LYS G:18 , THR G:65 , TRP G:66 , THR G:67 , THR G:68 , HOH G:2466 , HOH G:2467BINDING SITE FOR RESIDUE EDO G1479
30DC3SOFTWAREGLU G:52 , HOH G:2468 , HOH G:2470BINDING SITE FOR RESIDUE EDO G1480
31DC4SOFTWAREHOH C:2463 , GLU G:464 , LYS G:466 , PHE G:467 , GLU G:468 , PHE G:469 , HOH G:2442BINDING SITE FOR RESIDUE EDO G1481
32DC5SOFTWAREHIS G:298 , PHE G:311 , GLU G:336 , ASP G:473 , HOH G:2300 , HOH G:2326 , HOH G:2471 , HOH G:2472BINDING SITE FOR RESIDUE EDO G1482
33DC6SOFTWARELEU C:270 , LEU G:270 , HOH G:2473 , HOH G:2474BINDING SITE FOR RESIDUE EDO G1483
34DC7SOFTWARETYR C:226 , HOH C:2237 , LYS I:49 , GLU I:55 , HOH I:2104BINDING SITE FOR RESIDUE EDO I1127
35DC8SOFTWAREGLY I:37 , TRP I:38 , ILE I:39 , PHE I:81 , GLY I:82 , CYS I:83 , HOH I:2157BINDING SITE FOR RESIDUE EDO I1128
36DC9SOFTWARETYR E:226 , HOH E:2251 , LYS K:49 , GLU K:55 , HOH K:2110 , HOH K:2166BINDING SITE FOR RESIDUE EDO K1127
37EC1SOFTWAREGLY K:37 , TRP K:38 , ILE K:39 , GLY K:82 , CYS K:83 , HOH K:2167 , HOH K:2168BINDING SITE FOR RESIDUE EDO K1128
38EC2SOFTWARETYR G:226 , HOH G:2254 , LYS M:49 , GLU M:55 , HOH M:2113 , HOH M:2168BINDING SITE FOR RESIDUE EDO M1127
39EC3SOFTWAREGLY M:37 , TRP M:38 , ILE M:39 , GLY M:82 , CYS M:83 , ARG M:84 , HOH M:2170BINDING SITE FOR RESIDUE EDO M1128
40EC4SOFTWARETYR A:226 , ALA A:230 , HOH A:2237 , LYS O:49 , GLU O:55 , HOH O:2113 , HOH O:2171BINDING SITE FOR RESIDUE EDO O1127
41EC5SOFTWAREGLY O:37 , TRP O:38 , ILE O:39 , GLY O:82 , CYS O:83 , HOH O:2172BINDING SITE FOR RESIDUE EDO O1128

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1A:449 -A:459
2C:247 -G:247
3C:449 -C:459
4E:449 -E:459
5G:449 -G:459

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GK8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_RBL_CHLRE_001 *L46PRBL_CHLRE  ---  ---A/C/E/GP46P
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_RBL_CHLRE_001 *L46PRBL_CHLRE  ---  ---A/C/E/GP46P
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RUBISCO_LARGEPS00157 Ribulose bisphosphate carboxylase large chain active site.RBL_CHLRE196-204
 
 
 		  4A:196-204
C:196-204
E:196-204
G:196-204
Biological Unit 1 (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RUBISCO_LARGEPS00157 Ribulose bisphosphate carboxylase large chain active site.RBL_CHLRE196-204
 
 
 		  8A:196-204
C:196-204
E:196-204
G:196-204

(-) Exons   (0, 0)

(no "Exon" information available for 1GK8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:469
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:469
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466         
            RBL_CHLRE     7 TKAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d1gk8a2 A:7-149 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                d1gk8a1 A:150-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------1gk8A01 A:22-148  [code=3.30.70.150, no name defined]                                                                          1gk8A02 A:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gk8 A   7 TKAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146    |  156       166       176       186       196    |  206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366  |    376       386       396       406       416       426       436       446       456       466         
                                                                                                                           104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:469
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:469
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466         
            RBL_CHLRE     7 TKAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d1gk8c2 C:7-149 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                d1gk8c1 C:150-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------1gk8C01 C:22-148  [code=3.30.70.150, no name defined]                                                                          1gk8C02 C:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gk8 C   7 TKAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146    |  156       166       176       186       196    |  206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366  |    376       386       396       406       416       426       436       446       456       466         
                                                                                                                           104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:465
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d1gk8e2 E:11-149 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                           d1gk8e1 E:150-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -----------1gk8E01 E:22-148  [code=3.30.70.150, no name defined]                                                                          1gk8E02 E:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gk8 E  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:467
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:467
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       
            RBL_CHLRE     9 AGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d1gk8g2 G:9-149 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                              d1gk8g1 G:150-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------1gk8G01 G:22-148  [code=3.30.70.150, no name defined]                                                                          1gk8G02 G:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gk8 G   9 AGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    18        28        38        48        58        68        78        88        98     | 108       118       128       138       148  |    158       168       178       188       198  |    208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368|      378       388       398       408       418       428       438       448       458       468       
                                                                                                                         104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain I from PDB  Type:PROTEIN  Length:126
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:126
                                    55        65        75        85        95       105       115       125       135       145       155       165      
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
               SCOP domains d1gk8i_ I: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                     SCOP domains
               CATH domains -1gk8I00 I:2-126  [code=3.30.190.10, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1gk8 I   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 126
                            |       10        20        30        40        50        60        70        80        90       100       110       120      
                            1-MME                                                                                                                         


Chain K from PDB  Type:PROTEIN  Length:126
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:126
                                    55        65        75        85        95       105       115       125       135       145       155       165      
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
               SCOP domains d1gk8k_ K: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                     SCOP domains
               CATH domains -1gk8K00 K:2-126  [code=3.30.190.10, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1gk8 K   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 126
                            |       10        20        30        40        50        60        70        80        90       100       110       120      
                            1-MME                                                                                                                         


Chain M from PDB  Type:PROTEIN  Length:126
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:126
                                    55        65        75        85        95       105       115       125       135       145       155       165      
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
               SCOP domains d1gk8m_ M: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                     SCOP domains
               CATH domains -1gk8M00 M:2-126  [code=3.30.190.10, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1gk8 M   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 126
                            |       10        20        30        40        50        60        70        80        90       100       110       120      
                            1-MME                                                                                                                         


Chain O from PDB  Type:PROTEIN  Length:126
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:126
                                    55        65        75        85        95       105       115       125       135       145       155       165      
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
               SCOP domains d1gk8o_ O: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                     SCOP domains
               CATH domains -1gk8O00 O:2-126  [code=3.30.190.10, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1gk8 O   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 126
                            |       10        20        30        40        50        60        70        80        90       100       110       120      
                            1-MME
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GK8)

(-) Gene Ontology  (13, 23)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (RBL_CHLRE | P00877)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009853    photorespiration    A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019253    reductive pentose-phosphate cycle    The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain I,K,M,O   (RBS1_CHLRE | P00873)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009853    photorespiration    A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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  RBS1_CHLRE | P00873
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBL_CHLRE | P00877: 1ir2 1uw9 1uwa 1uzd 1uzh 2v63 2v67 2v68 2v69 2v6a 2vdh 2vdi 5bs2
        RBS1_CHLRE | P00873: 1uw9 1uwa 1uzd 1uzh 2v63 2v67 2v68 2v69 2v6a 2vdh 2vdi

(-) Related Entries Specified in the PDB File

1aa1 ACTIVATED SPINACH RUBISCO IN COMPLEX WITH THE PRODUCT 3-PHOSPHOGLYCERATE
1aus ACTIVATED UNLIGANDED SPINACH RUBISCO
1bwv ACTIVATED RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH THE REACTION INTERMEDIATE ANALOGUE 2- CARBOXYARABINITOL 1,5-BISPHOSPHATE
1bxn THE CRYSTAL STRUCTURE OF RUBISCO FROM ALCALIGENES EUTROPHUS TO 2.7 ANGSTROMS.
1ej7 CRYSTAL STRUCTURE OF UNACTIVATED TOBACCO RUBISCO WITH BOUND PHOSPHATE IONS
1gk8 RUBISCO FROM CHLAMYDOMONAS REINHARDTII
1rba RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE /OXYGENASE) MUTANT WITH ASP 193 REPLACED BY ASN (D193N)
1rbl RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/ OXYGENASE (RUBISCO)
1rbo SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
1rco SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR D-XYLULOSE-2,2-DIOL-1,5- BISPHOSPHATE
1rcx NON-ACTIVATED SPINACH RUBISCO IN COMPLEX WITH ITS SUBSTRATE RIBULOSE-1,5-BISPHOSPHATE
1rlc RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/ OXYGENASE (RUBISCO) COMPLEX WITH 2-CARBOXY-D -ARABINITOL-1,5-BISPHOSPHATE(CABP)
1rld RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/ OXYGENASE (RUBISCO)
1rsc RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/ OXYGENASE (RUBISCO)
1rus RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE (SLASH)OXYGENASE) COMPLEX WITH 3- PHOSPHOGLYCERATE
1rxo ACTIVATED SPINACH RUBISCO IN COMPLEX WITH ITS SUBSTRATE RIBULOSE-1,5-BISPHOSPHATE AND CALCIUM
2rus RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE (SLASH)OXYGENASE) COMPLEX WITH CO2 AND MG+
5rub RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE (SLASH)OXYGENASE)
8ruc ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2- CARBOXYARABINITOL BISPHOSPHATE
9rub RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH) OXYGLUCOSE (RUBISCO) COMPLEXED WITH CO=2=, MG==++==, AND SUBSTRATE RIBULOSE-1,5- BISPHOSPHATE