Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT MUTATION D473E
 
Authors :  S. Karkehabadi, S. Satagopan, T. C. Taylor, R. J. Spreitzer, I. Andersson
Date :  14 Jul 07  (Deposition) - 31 Jul 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Keywords :  Large Subunit Loop 6 Mutation, Co2/O2 Specificity, Carbon Dioxide Fixation, Photosynthesis, Transit Peptide, Photorespiration, Metal-Binding, Hydroxylation, Oxidoreductase, Methylation, Chloroplast, Calvin Cycle, Monooxygenase, Lyase, Rubisco, Plastid, Magnesium, Acetylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Karkehabadi, S. Satagopan, T. C. Taylor, R. J. Spreitzer, I. Andersson
Structural Analysis Of Altered Large-Subunit Loop- 6-Carboxy-Terminus Interactions That Influence Catalytic Efficiency And Co2-O2 Specificity Of Ribulose-1, 5-Bisphosphate Carboxylase Oxygenase
Biochemistry V. 46 11080 2007
PubMed-ID: 17824672  |  Reference-DOI: 10.1021/BI701063F

(-) Compounds

Molecule 1 - RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
    Chains: A, B, C, D, E, F, G, H
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055
    Strain: 2137
    Synonym: RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE LARGE CHAIN, RUBISCO LARGE SUBUNIT
 
Molecule 2 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
    Chains: I, J, K, L, M, N, O, P
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055
    Strain: 2137
    Synonym: RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE SMALL CHAIN, RUBISCO SMALL SUBUNIT 1

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 88)

Asymmetric/Biological Unit (7, 88)
No.NameCountTypeFull Name
1CAP8Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2EDO24Ligand/Ion1,2-ETHANEDIOL
3HYP16Mod. Amino Acid4-HYDROXYPROLINE
4KCX8Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
5MG8Ligand/IonMAGNESIUM ION
6MME8Mod. Amino AcidN-METHYL METHIONINE
7SMC16Mod. Amino AcidS-METHYLCYSTEINE

(-) Sites  (40, 40)

Asymmetric Unit (40, 40)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:1471BINDING SITE FOR RESIDUE MG A1470
02AC2SOFTWARETHR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , HOH A:1049 , HOH A:1050 , MG A:1470 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123BINDING SITE FOR RESIDUE CAP A1471
03AC3SOFTWARELYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , CAP B:1471BINDING SITE FOR RESIDUE MG B1470
04AC4SOFTWAREGLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , THR B:173 , LYS B:175 , LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , HOH B:1029 , MG B:1470BINDING SITE FOR RESIDUE CAP B1471
05AC5SOFTWARELYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , CAP C:1472BINDING SITE FOR RESIDUE MG C1471
06AC6SOFTWARETHR C:173 , LYS C:175 , LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , HOH C:1051 , HOH C:1056 , MG C:1471 , GLU D:60 , THR D:65 , TRP D:66 , ASN D:123BINDING SITE FOR RESIDUE CAP C1472
07AC7SOFTWARELYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , CAP D:1476BINDING SITE FOR RESIDUE MG D1475
08AC8SOFTWAREGLU C:60 , THR C:65 , TRP C:66 , ASN C:123 , HOH C:1015 , THR D:173 , LYS D:175 , LYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , HIS D:294 , ARG D:295 , HIS D:327 , LYS D:334 , LEU D:335 , SER D:379 , GLY D:380 , GLY D:381 , GLY D:403 , GLY D:404 , HOH D:1029 , HOH D:1035 , HOH D:1036 , MG D:1475BINDING SITE FOR RESIDUE CAP D1476
09AC9SOFTWARELYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , CAP E:1471BINDING SITE FOR RESIDUE MG E1470
10BC1SOFTWARETHR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , HOH E:1048 , HOH E:1049 , MG E:1470 , GLU F:60 , THR F:65 , TRP F:66 , ASN F:123BINDING SITE FOR RESIDUE CAP E1471
11BC2SOFTWARELYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , CAP F:1471BINDING SITE FOR RESIDUE MG F1470
12BC3SOFTWAREGLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , THR F:173 , LYS F:175 , LYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , HIS F:294 , ARG F:295 , HIS F:327 , LYS F:334 , LEU F:335 , SER F:379 , GLY F:380 , GLY F:381 , GLY F:403 , GLY F:404 , HOH F:1039 , HOH F:1040 , MG F:1470BINDING SITE FOR RESIDUE CAP F1471
13BC4SOFTWARELYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , CAP G:1471BINDING SITE FOR RESIDUE MG G1470
14BC5SOFTWARETHR G:173 , LYS G:175 , LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , HOH G:1035 , HOH G:1041 , MG G:1470 , GLU H:60 , THR H:65 , TRP H:66 , ASN H:123BINDING SITE FOR RESIDUE CAP G1471
15BC6SOFTWARELYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , CAP H:1471BINDING SITE FOR RESIDUE MG H1470
16BC7SOFTWAREGLU G:60 , THR G:65 , TRP G:66 , ASN G:123 , THR H:173 , LYS H:175 , LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404 , HOH H:1040 , MG H:1470BINDING SITE FOR RESIDUE CAP H1471
17BC8SOFTWARELYS A:18 , ASP A:19 , TRP A:66 , THR A:67 , THR A:68BINDING SITE FOR RESIDUE EDO A1472
18BC9SOFTWARELYS A:466 , PHE A:467 , GLU A:468 , PHE A:469BINDING SITE FOR RESIDUE EDO A1473
19CC1SOFTWARETYR C:24 , THR C:68 , VAL C:69 , ASP C:72 , HOH C:1057 , EDO C:1474BINDING SITE FOR RESIDUE EDO C1473
20CC2SOFTWARELYS C:18 , TYR C:20 , THR C:65 , TRP C:66 , THR C:67 , THR C:68 , HOH C:1057 , EDO C:1473BINDING SITE FOR RESIDUE EDO C1474
21CC3SOFTWAREARG C:295 , GLU C:336 , HOH C:1043BINDING SITE FOR RESIDUE EDO C1475
22CC4SOFTWARETYR E:24 , THR E:68 , VAL E:69 , ASP E:72 , HOH E:1053BINDING SITE FOR RESIDUE EDO E1472
23CC5SOFTWARELYS E:18 , TYR E:20 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , HOH E:1002BINDING SITE FOR RESIDUE EDO E1473
24CC6SOFTWAREGLU E:52BINDING SITE FOR RESIDUE EDO E1474
25CC7SOFTWARETYR G:24 , THR G:68 , VAL G:69 , ASP G:72BINDING SITE FOR RESIDUE EDO G1472
26CC8SOFTWARELYS G:18 , ASP G:19 , TYR G:20 , THR G:65 , TRP G:66 , THR G:67 , THR G:68BINDING SITE FOR RESIDUE EDO G1473
27CC9SOFTWARELEU E:270 , HOH E:1054 , LEU F:270 , HOH F:1028BINDING SITE FOR RESIDUE EDO E1475
28DC1SOFTWARELEU A:270 , HOH A:1051 , HOH A:1052 , LEU B:270BINDING SITE FOR RESIDUE EDO A1474
29DC2SOFTWARELEU G:270 , LEU H:270 , HOH H:1041 , HOH H:1042BINDING SITE FOR RESIDUE EDO H1472
30DC3SOFTWARETYR B:24 , GLY B:64 , THR B:68 , VAL B:69 , ASP B:72 , EDO B:1473BINDING SITE FOR RESIDUE EDO B1472
31DC4SOFTWARELYS B:18 , TYR B:20 , THR B:65 , TRP B:66 , THR B:67 , THR B:68 , EDO B:1472BINDING SITE FOR RESIDUE EDO B1473
32DC5SOFTWARETYR H:24 , GLY H:64 , THR H:68 , VAL H:69 , ASP H:72 , HOH H:1043 , EDO H:1474BINDING SITE FOR RESIDUE EDO H1473
33DC6SOFTWARELYS H:18 , ASP H:19 , TRP H:66 , THR H:67 , THR H:68 , EDO H:1473BINDING SITE FOR RESIDUE EDO H1474
34DC7SOFTWARELYS H:466 , PHE H:467 , GLU H:468BINDING SITE FOR RESIDUE EDO H1475
35DC8SOFTWARETYR F:24 , THR F:68 , VAL F:69 , ASP F:72 , LEU F:77 , HOH F:1041 , EDO F:1473BINDING SITE FOR RESIDUE EDO F1472
36DC9SOFTWARELYS F:18 , ASP F:19 , THR F:65 , TRP F:66 , THR F:67 , THR F:68 , EDO F:1472BINDING SITE FOR RESIDUE EDO F1473
37EC1SOFTWARETYR D:24 , GLY D:64 , THR D:68 , VAL D:69 , ASP D:72 , HOH D:1002BINDING SITE FOR RESIDUE EDO D1477
38EC2SOFTWARELYS D:18 , ASP D:19 , THR D:65 , TRP D:66 , THR D:67 , THR D:68BINDING SITE FOR RESIDUE EDO D1478
39EC3SOFTWARELEU C:270 , THR C:271 , LEU D:270 , GLY D:273 , PHE D:274BINDING SITE FOR RESIDUE EDO D1479
40EC4SOFTWAREASP E:286 , ASN E:287 , HOH E:1039 , ARG G:215 , LYS G:252 , SMC G:256 , VAL M:63BINDING SITE FOR RESIDUE EDO G1474

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:247 -B:247
2C:247 -D:247
3E:247 -F:247
4G:247 -H:247

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Lys A:175 -Pro A:176
2Lys B:175 -Pro B:176
3Lys C:175 -Pro C:176
4Lys D:175 -Pro D:176
5Lys E:175 -Pro E:176
6Lys F:175 -Pro F:176
7Lys G:175 -Pro G:176
8Lys H:175 -Pro H:176

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 8)

Asymmetric/Biological Unit (1, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_RBL_CHLRE_001 *L46PRBL_CHLRE  ---  ---A/B/C/D/E/F/G/HP46P
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 8)

Asymmetric/Biological Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RUBISCO_LARGEPS00157 Ribulose bisphosphate carboxylase large chain active site.RBL_CHLRE196-204
 
 
 
 
 
 
 		  8A:196-204
B:196-204
C:196-204
D:196-204
E:196-204
F:196-204
G:196-204
H:196-204

(-) Exons   (0, 0)

(no "Exon" information available for 2V69)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:459
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:459
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460         
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
               SCOP domains d2v69a2 A:11-149 automated matches                                                                                                         d2v69a1 A:150-469 automated matches                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----------2v69A01 A:22-148  [code=3.30.70.150, no name defined]                                                                          2v69A02 A:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 A  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460         
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                


Chain B from PDB  Type:PROTEIN  Length:460
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:460
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469
            RBL_CHLRE    10 GAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
               SCOP domains d2v69b2 B:10-149 automated matches                                                                                                          d2v69b1 B:150-469 automated matches                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------2v69B01 B:22-148  [code=3.30.70.150, no name defined]                                                                          2v69B02 B:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 B  10 GAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
                                    19        29        39        49        59        69        79        89        99    |  109       119       129       139       149 |     159       169       179       189       199 |     209       219       229       239       249      |259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469
                                                                                                                        104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                


Chain C from PDB  Type:PROTEIN  Length:459
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:459
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461         
            RBL_CHLRE    12 GFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFD 470
               SCOP domains d2v69c2 C:12-149 automated matches                                                                                                        d2v69c1 C:150-470 automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------2v69C01 C:22-148  [code=3.30.70.150, no name defined]                                                                          2v69C02 C:149-462 Rubisco                                                                                                                                                                                                                                                                                                 -------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh..........eeeeeeeee....hhhhhhhhhhhh........hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------P---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 C  12 GFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFD 470
                                    21        31        41        51        61        71        81        91       101  |    111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    |  261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461         
                                                                                                                      104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:464
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:464
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470    
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDK 474
               SCOP domains d2v69d2 D:11-149 automated matches                                                                                                         d2v69d1 D:150-474 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------2v69D01 D:22-148  [code=3.30.70.150, no name defined]                                                                          2v69D02 D:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------ CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhh........hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eee.eeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -----------------------------------P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 D  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIEK 474
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470    
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:459
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:459
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460         
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
               SCOP domains d2v69e2 E:11-149 automated matches                                                                                                         d2v69e1 E:150-469 automated matches                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----------2v69E01 E:22-148  [code=3.30.70.150, no name defined]                                                                          2v69E02 E:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 E  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460         
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                


Chain F from PDB  Type:PROTEIN  Length:461
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:461
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468 
            RBL_CHLRE     9 AGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
               SCOP domains d2v69f2 F:9-149 automated matches                                                                                                            d2v69f1 F:150-469 automated matches                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------2v69F01 F:22-148  [code=3.30.70.150, no name defined]                                                                          2v69F02 F:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 F   9 AGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
                                    18        28        38        48        58        68        78        88        98     | 108       118       128       138       148  |    158       168       178       188       198  |    208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368|      378       388       398       408       418       428       438       448       458       468 
                                                                                                                         104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                


Chain G from PDB  Type:PROTEIN  Length:461
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:461
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468 
            RBL_CHLRE     9 AGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
               SCOP domains d2v69g2 G:9-149 automated matches                                                                                                            d2v69g1 G:150-469 automated matches                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------2v69G01 G:22-148  [code=3.30.70.150, no name defined]                                                                          2v69G02 G:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhh...eee.eeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 G   9 AGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
                                    18        28        38        48        58        68        78        88        98     | 108       118       128       138       148  |    158       168       178       188       198  |    208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368|      378       388       398       408       418       428       438       448       458       468 
                                                                                                                         104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                


Chain H from PDB  Type:PROTEIN  Length:458
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:458
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        
            RBL_CHLRE    12 GFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
               SCOP domains d2v69h2 H:12-149 automated matches                                                                                                        d2v69h1 H:150-469 automated matches                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------2v69H01 H:22-148  [code=3.30.70.150, no name defined]                                                                          2v69H02 H:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------- CATH domains
           Pfam domains (1) ---------RuBisCO_large_N-2v69H09 H:21-146                                                                                              -------RuBisCO_large-2v69H01 H:154-462                                                                                                                                                                                                                                                                                      ------- Pfam domains (1)
           Pfam domains (2) ---------RuBisCO_large_N-2v69H10 H:21-146                                                                                              -------RuBisCO_large-2v69H02 H:154-462                                                                                                                                                                                                                                                                                      ------- Pfam domains (2)
           Pfam domains (3) ---------RuBisCO_large_N-2v69H11 H:21-146                                                                                              -------RuBisCO_large-2v69H03 H:154-462                                                                                                                                                                                                                                                                                      ------- Pfam domains (3)
           Pfam domains (4) ---------RuBisCO_large_N-2v69H12 H:21-146                                                                                              -------RuBisCO_large-2v69H04 H:154-462                                                                                                                                                                                                                                                                                      ------- Pfam domains (4)
           Pfam domains (5) ---------RuBisCO_large_N-2v69H13 H:21-146                                                                                              -------RuBisCO_large-2v69H05 H:154-462                                                                                                                                                                                                                                                                                      ------- Pfam domains (5)
           Pfam domains (6) ---------RuBisCO_large_N-2v69H14 H:21-146                                                                                              -------RuBisCO_large-2v69H06 H:154-462                                                                                                                                                                                                                                                                                      ------- Pfam domains (6)
           Pfam domains (7) ---------RuBisCO_large_N-2v69H15 H:21-146                                                                                              -------RuBisCO_large-2v69H07 H:154-462                                                                                                                                                                                                                                                                                      ------- Pfam domains (7)
           Pfam domains (8) ---------RuBisCO_large_N-2v69H16 H:21-146                                                                                              -------RuBisCO_large-2v69H08 H:154-462                                                                                                                                                                                                                                                                                      ------- Pfam domains (8)
         Sec.struct. author .......hhhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh........eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 H  12 GFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEF 469
                                    21        31        41        51        61        71        81        91       101  |    111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    |  261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        
                                                                                                                      104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                


Chain I from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2v69i_ I: automated matches                                                                                                                 SCOP domains
               CATH domains -2v69I00 I:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee.........hhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 I   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain J from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2v69j_ J: automated matches                                                                                                                 SCOP domains
               CATH domains -2v69J00 J:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 J   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain K from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2v69k_ K: automated matches                                                                                                                 SCOP domains
               CATH domains -2v69K00 K:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee.hhhhh..hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 K   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain L from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2v69l_ L: automated matches                                                                                                                 SCOP domains
               CATH domains -2v69L00 L:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee.........hhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 L   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain M from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2v69m_ M: automated matches                                                                                                                 SCOP domains
               CATH domains -2v69M00 M:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee.hhhhh...hhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 M   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain N from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2v69n_ N: automated matches                                                                                                                 SCOP domains
               CATH domains -2v69N00 N:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhhh.eeeeeee........hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 N   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain O from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2v69o_ O: automated matches                                                                                                                 SCOP domains
               CATH domains -2v69O00 O:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee........hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 O   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain P from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2v69p_ P: automated matches                                                                                                                 SCOP domains
               CATH domains -2v69P00 P:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
           Pfam domains (1) ----------RuBisCO_small-2v69P01 P:11-127                                                                                       ------------- Pfam domains (1)
           Pfam domains (2) ----------RuBisCO_small-2v69P02 P:11-127                                                                                       ------------- Pfam domains (2)
           Pfam domains (3) ----------RuBisCO_small-2v69P03 P:11-127                                                                                       ------------- Pfam domains (3)
           Pfam domains (4) ----------RuBisCO_small-2v69P04 P:11-127                                                                                       ------------- Pfam domains (4)
           Pfam domains (5) ----------RuBisCO_small-2v69P05 P:11-127                                                                                       ------------- Pfam domains (5)
           Pfam domains (6) ----------RuBisCO_small-2v69P06 P:11-127                                                                                       ------------- Pfam domains (6)
           Pfam domains (7) ----------RuBisCO_small-2v69P07 P:11-127                                                                                       ------------- Pfam domains (7)
           Pfam domains (8) ----------RuBisCO_small-2v69P08 P:11-127                                                                                       ------------- Pfam domains (8)
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee..........hhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v69 P   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: RuBisCO_large] (36)
(-)
Clan: no clan defined [family: RuBisCO_large_N] (27)
(-)
Clan: no clan defined [family: RuBisCO_small] (23)

(-) Gene Ontology  (13, 23)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (RBL_CHLRE | P00877)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009853    photorespiration    A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019253    reductive pentose-phosphate cycle    The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain I,J,K,L,M,N,O,P   (RBS1_CHLRE | P00873)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009853    photorespiration    A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CAP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HYP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    KCX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MME  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SMC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Lys A:175 - Pro A:176   [ RasMol ]  
    Lys B:175 - Pro B:176   [ RasMol ]  
    Lys C:175 - Pro C:176   [ RasMol ]  
    Lys D:175 - Pro D:176   [ RasMol ]  
    Lys E:175 - Pro E:176   [ RasMol ]  
    Lys F:175 - Pro F:176   [ RasMol ]  
    Lys G:175 - Pro G:176   [ RasMol ]  
    Lys H:175 - Pro H:176   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2v69
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RBL_CHLRE | P00877
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RBS1_CHLRE | P00873
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.1.1.39
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  RBL_CHLRE | P00877
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RBS1_CHLRE | P00873
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBL_CHLRE | P00877: 1gk8 1ir2 1uw9 1uwa 1uzd 1uzh 2v63 2v67 2v68 2v6a 2vdh 2vdi 5bs2
        RBS1_CHLRE | P00873: 1gk8 1uw9 1uwa 1uzd 1uzh 2v63 2v67 2v68 2v6a 2vdh 2vdi

(-) Related Entries Specified in the PDB File

1gk8 RUBISCO FROM CHLAMYDOMONAS REINHARDTII
1ir2 CRYSTAL STRUCTURE OF ACTIVATED RIBULOSE-1,5 -BISPHOSPHATECARBOXYLASE/OXYGENASE (RUBISCO) FROM GREEN ALGA,CHLAMYDOMONAS REINHARDTII COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE ( 2-CABP)
1uw9 L290F-A222T CHLAMYDOMONAS RUBISCO MUTANT
1uwa L290F MUTANT RUBISCO FROM CHLAMYDOMONAS
1uzd CHLAMYDOMONAS,SPINACH CHIMERIC RUBISCO
1uzh A CHIMERIC CHLAMYDOMONAS, SPINACH RUBISCO ENZYME
2v63 CRYSTAL STRUCTURE OF RUBISCO FROM CHLAMYDOMONAS REINHARDTII WITH A LARGE-SUBUNIT V331A MUTATION