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(-) Description

Title :  THE CRYSTAL STRUCTURE OF RUBISCO FROM ALCALIGENES EUTROPHUS TO 2.7 ANGSTROMS.
 
Authors :  S. Hansen, V. B. Vollan, E. Hough, K. Andersen
Date :  06 Oct 98  (Deposition) - 06 Oct 99  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,C,E,G,I,J,K,L
Biol. Unit 1:  A,C,E,G,I,J,K,L  (2x)
Keywords :  Lyase (Carbon-Carbon), Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Hansen, V. B. Vollan, E. Hough, K. Andersen
The Crystal Structure Of Rubisco From Alcaligenes Eutrophus Reveals A Novel Central Eight-Stranded Beta-Barrel Formed B Beta-Strands From Four Subunits.
J. Mol. Biol. V. 288 609 1999
PubMed-ID: 10329167  |  Reference-DOI: 10.1006/JMBI.1999.2701
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN)
    Chains: A, C, E, G
    EC Number: 4.1.1.39
    Engineered: YES
    Organism Scientific: CUPRIAVIDUS NECATOR
    Organism Taxid: 106590
    Synonym: RUBISCO
 
Molecule 2 - PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN)
    Chains: I, J, K, L
    EC Number: 4.1.1.39
    Engineered: YES
    Organism Scientific: CUPRIAVIDUS NECATOR
    Organism Taxid: 106590
    Synonym: RUBISCO

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ACEGIJKL
Biological Unit 1 (2x): ACEGIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1PO48Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1PO416Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:297 , HIS A:329 , GLU A:338 , SER A:381 , ASN E:126BINDING SITE FOR RESIDUE PO4 A 501
2AC2SOFTWAREGLY A:382 , GLY A:405 , GLY A:406 , THR E:68 , TRP E:69BINDING SITE FOR RESIDUE PO4 A 502
3AC3SOFTWAREARG C:297 , HIS C:329 , GLU C:338 , SER C:381BINDING SITE FOR RESIDUE PO4 C 503
4AC4SOFTWARETHR C:68 , TRP C:69 , GLY C:382 , GLY C:383 , GLY C:405 , GLY C:406BINDING SITE FOR RESIDUE PO4 C 504
5AC5SOFTWAREARG E:297 , HIS E:329 , GLU E:338 , SER E:381BINDING SITE FOR RESIDUE PO4 E 505
6AC6SOFTWARETHR A:68 , TRP A:69 , GLY E:382 , GLY E:405 , GLY E:406BINDING SITE FOR RESIDUE PO4 E 506
7AC7SOFTWAREARG G:297 , HIS G:329 , GLU G:338 , SER G:381BINDING SITE FOR RESIDUE PO4 G 507
8AC8SOFTWARETHR G:68 , TRP G:69 , GLY G:405 , GLY G:406BINDING SITE FOR RESIDUE PO4 G 508

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:278 -E:278
2C:278 -C:278
3G:278 -G:278

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BXN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BXN)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RUBISCO_LARGEPS00157 Ribulose bisphosphate carboxylase large chain active site.RBL1C_CUPNE199-207
 
 
 		  4A:199-207
C:199-207
E:199-207
G:199-207
Biological Unit 1 (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RUBISCO_LARGEPS00157 Ribulose bisphosphate carboxylase large chain active site.RBL1C_CUPNE199-207
 
 
 		  8A:199-207
C:199-207
E:199-207
G:199-207

(-) Exons   (0, 0)

(no "Exon" information available for 1BXN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:445
 aligned with RBL1C_CUPNE | P0C2C2 from UniProtKB/Swiss-Prot  Length:486

    Alignment length:446
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461      
          RBL1C_CUPNE    22 YKEMGYWDGDYVPKDTDVLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCAPLRAALDTWGDI 467
               SCOP domains d1 bxna2 A:22-150 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                d1bxna1 A:151-467 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---1bxnA01 A:25-151  [code=3.30.70.150, no name defined]                                                                          1bxnA02 A:152-464 Rubisco                                                                                                                                                                                                                                                                                                --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.............eeeeeeee.......hhhhhhhhhh...........hhhhh..hhh......eee.......eeeeeeeehhh.....hhhhhhhhh..hhh........eeeee..hhhhhh.......hhhhhhhh......eeeee........hhhhhhhhhhhhh....eee............hhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhh...eeeeehhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh.......hhh..............eeeeee...hhhhhhhhhhh...eeeee.hhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxn A  22 YK-MGYWDGDYVPKDTDLLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCGPLRAALDTWGDI 467
                             | |    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461      
                             | |                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                            23 |                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                              25                                                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:445
 aligned with RBL1C_CUPNE | P0C2C2 from UniProtKB/Swiss-Prot  Length:486

    Alignment length:446
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461      
          RBL1C_CUPNE    22 YKEMGYWDGDYVPKDTDVLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCAPLRAALDTWGDI 467
               SCOP domains d1 bxnc2 C:22-150 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                d1bxnc1 C:151-467 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---1bxnC01 C:25-151  [code=3.30.70.150, no name defined]                                                                          1bxnC02 C:152-464 Rubisco                                                                                                                                                                                                                                                                                                --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.............eeeeeeee.......hhhhhhhhhh...........hhhhh..hhh......eee.......eeeeeeeehhh.....hhhhhhhhh..hhh........eeeee..hhhhhh.......hhhhhhhh......eeeee........hhhhhhhhhhhhh....eee............hhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhh....eeeeehhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh.......hhh..............eeeeee...hhhhhhhhhh....eeeee.hhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxn C  22 YK-MGYWDGDYVPKDTDLLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCGPLRAALDTWGDI 467
                             | |    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461      
                            23 |                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                              25                                                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:445
 aligned with RBL1C_CUPNE | P0C2C2 from UniProtKB/Swiss-Prot  Length:486

    Alignment length:446
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461      
          RBL1C_CUPNE    22 YKEMGYWDGDYVPKDTDVLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCAPLRAALDTWGDI 467
               SCOP domains d1 bxne2 E:22-150 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                d1bxne1 E:151-467 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---1bxnE01 E:25-151  [code=3.30.70.150, no name defined]                                                                          1bxnE02 E:152-464 Rubisco                                                                                                                                                                                                                                                                                                --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.............eeeeeeee.......hhhhhhhhhh...........hhhhh..hhh......eee.......eeeeeeeehhh.....hhhhhhhhh..hhh........eeeee..hhhhhh.......hhhhhhhh......eeeee........hhhhhhhhhhhhh....eee............hhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhh...eeeeehhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh.......hhh..............eeeeee...hhhhhhhhhhh...eeeee.hhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxn E  22 YK-MGYWDGDYVPKDTDLLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCGPLRAALDTWGDI 467
                             | |    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461      
                            23 |                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                              25                                                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain G from PDB  Type:PROTEIN  Length:445
 aligned with RBL1C_CUPNE | P0C2C2 from UniProtKB/Swiss-Prot  Length:486

    Alignment length:446
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461      
          RBL1C_CUPNE    22 YKEMGYWDGDYVPKDTDVLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCAPLRAALDTWGDI 467
               SCOP domains d1 bxng2 G:22-150 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                d1bxng1 G:151-467 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---1bxnG01 G:25-151  [code=3.30.70.150, no name defined]                                                                          1bxnG02 G:152-464 Rubisco                                                                                                                                                                                                                                                                                                --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.............eeeeeeee.......hhhhhhhhhh...........hhhhh..hhh......eee.......eeeeeeeehhh.....hhhhhhhhh..hhh........eeeee..hhhhhh.......hhhhhhhh......eeeee........hhhhhhhhhhhhh....eee............hhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhh...eeeeehhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh.......hhh..............eeeeee...hhhhhhhhhhh...eeeee.hhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxn G  22 YK-MGYWDGDYVPKDTDLLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCGPLRAALDTWGDI 467
                             | |    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461      
                            23 |                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                              25                                                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain I from PDB  Type:PROTEIN  Length:129
 aligned with RBSC_CUPNE | P09658 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
           RBSC_CUPNE     1 MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA 129
               SCOP domains d1bxni_ I: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                        SCOP domains
               CATH domains 1bxnI00 I:1-129  [code=3.30.190.10, no name defined]                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhh..eeeeeee......................hhhhhhhhhhhhhh....eeeeeeee....eeeeeee....hhh.....eeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxn I   1 MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA 129
                                    10        20        30        40        50        60        70        80        90       100       110       120         


Chain J from PDB  Type:PROTEIN  Length:129
 aligned with RBSC_CUPNE | P09658 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
           RBSC_CUPNE     1 MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA 129
               SCOP domains d1bxnj_ J: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                        SCOP domains
               CATH domains 1bxnJ00 J:1-129  [code=3.30.190.10, no name defined]                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhh..eeeeeee......................hhhhhhhhhhhhhh....eeeeeeee....eeeeeee....hhh.....eeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxn J   1 MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA 129
                                    10        20        30        40        50        60        70        80        90       100       110       120         


Chain K from PDB  Type:PROTEIN  Length:129
 aligned with RBSC_CUPNE | P09658 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
           RBSC_CUPNE     1 MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA 129
               SCOP domains d1bxnk_ K: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                        SCOP domains
               CATH domains 1bxnK00 K:1-129  [code=3.30.190.10, no name defined]                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhh..eeeeeee......................hhhhhhhhhhhhhh....eeeeeeee....eeeeeee....hhh.....eeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxn K   1 MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA 129
                                    10        20        30        40        50        60        70        80        90       100       110       120         


Chain L from PDB  Type:PROTEIN  Length:129
 aligned with RBSC_CUPNE | P09658 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
           RBSC_CUPNE     1 MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA 129
               SCOP domains d1bxnl_ L: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                        SCOP domains
               CATH domains 1bxnL00 L:1-129  [code=3.30.190.10, no name defined]                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhh..eeeeeee......................hhhhhhhhhhhhhh....eeeeeeee....eeeeeee....hhh.....eeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxn L   1 MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA 129
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BXN)

(-) Gene Ontology  (9, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (RBL1C_CUPNE | P0C2C2)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019253    reductive pentose-phosphate cycle    The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.

Chain I,J,K,L   (RBSC_CUPNE | P09658)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019253    reductive pentose-phosphate cycle    The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.

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  RBSC_CUPNE | P09658
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 Related Entries

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