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(-) Description

Title :  CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT C192S MUTATION
 
Authors :  M. -J. Garcia-Murria, S. Karkehabadi, J. Marin-Navarro, S. Satagopan, I. Andersson, R. J. Spreitzer, J. Moreno
Date :  09 Oct 07  (Deposition) - 04 Nov 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Keywords :  Vicinal Cysteines, Co2/O2 Specificity, Photosynthesis, Transit Peptide, Photorespiration, Metal-Binding, Hydroxylation, Oxidoreductase, Methylation, Chloroplast, Calvin Cycle, Monooxygenase, Lyase, Rubisco, Plastid, Magnesium, Acetylation, Carbon Dioxide Fixation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. -J. Garcia-Murria, S. Karkehabadi, J. Marin-Navarro, S. Satagopan, I. Andersson, R. J. Spreitzer, J. Moreno
Structural And Functional Consequences Of The Replacement Of Proximal Residues Cys-172 And Cys- 192 In The Large Subunit Of Ribulose 1, 5- Bisphosphate Carboxylase/Oxygenase From Chlamydomonas Reinhardtii
Biochem. J. V. 411 241 2008
PubMed-ID: 18072944  |  Reference-DOI: 10.1042/BJ20071422

(-) Compounds

Molecule 1 - RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
    Chains: A, B, C, D, E, F, G, H
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLS-C192S
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055
    Strain: 18-7G
    Synonym: RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE LARGE CHAIN, RUBISCO LARGE SUBUNIT
 
Molecule 2 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
    Chains: I, J, K, L, M, N, O, P
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLS-C192S
    Expression System Taxid: 562
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055
    Strain: 18-7G
    Synonym: RUBISCO SMALL SUBUNIT 1,RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE SMALL CHAIN

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 107)

Asymmetric/Biological Unit (7, 107)
No.NameCountTypeFull Name
1CAP8Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2EDO43Ligand/Ion1,2-ETHANEDIOL
3HYP16Mod. Amino Acid4-HYDROXYPROLINE
4KCX8Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
5MG8Ligand/IonMAGNESIUM ION
6MME8Mod. Amino AcidN-METHYL METHIONINE
7SMC16Mod. Amino AcidS-METHYLCYSTEINE

(-) Sites  (59, 59)

Asymmetric Unit (59, 59)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:1477BINDING SITE FOR RESIDUE MG A1476
02AC2SOFTWARETHR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:1476 , HOH A:2124 , HOH A:2133 , HOH A:2150 , HOH A:2151 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123 , HOH B:2017 , HOH B:2037BINDING SITE FOR RESIDUE CAP A1477
03AC3SOFTWARELYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , CAP B:1477BINDING SITE FOR RESIDUE MG B1476
04AC4SOFTWAREGLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:2038 , THR B:173 , LYS B:175 , LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , MG B:1476 , HOH B:2053 , HOH B:2091 , HOH B:2124 , HOH B:2150 , HOH B:2151 , HOH B:2152BINDING SITE FOR RESIDUE CAP B1477
05AC5SOFTWARELYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , CAP C:1477BINDING SITE FOR RESIDUE MG C1476
06AC6SOFTWARETHR C:173 , LYS C:175 , LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , MG C:1476 , HOH C:2055 , HOH C:2118 , HOH C:2126 , HOH C:2141 , HOH C:2142 , HOH C:2143 , HOH C:2144 , GLU D:60 , THR D:65 , TRP D:66 , ASN D:123BINDING SITE FOR RESIDUE CAP C1477
07AC7SOFTWARELYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , CAP D:1477BINDING SITE FOR RESIDUE MG D1476
08AC8SOFTWAREGLU C:60 , THR C:65 , TRP C:66 , ASN C:123 , THR D:173 , LYS D:175 , LYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , HIS D:294 , ARG D:295 , HIS D:327 , LYS D:334 , LEU D:335 , SER D:379 , GLY D:380 , GLY D:381 , GLY D:403 , GLY D:404 , MG D:1476 , HOH D:2129 , HOH D:2154 , HOH D:2155 , HOH D:2156 , HOH D:2157 , HOH D:2158BINDING SITE FOR RESIDUE CAP D1477
09AC9SOFTWARELYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , CAP E:1477BINDING SITE FOR RESIDUE MG E1476
10BC1SOFTWARETHR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:1476 , HOH E:2110 , HOH E:2138 , HOH E:2155 , HOH E:2156 , HOH E:2157 , HOH E:2158 , GLU F:60 , THR F:65 , TRP F:66 , ASN F:123 , HOH F:2015BINDING SITE FOR RESIDUE CAP E1477
11BC2SOFTWARELYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , CAP F:1477BINDING SITE FOR RESIDUE MG F1476
12BC3SOFTWAREGLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , HOH E:2018 , THR F:173 , LYS F:175 , LYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , HIS F:294 , ARG F:295 , HIS F:327 , LYS F:334 , LEU F:335 , SER F:379 , GLY F:380 , GLY F:381 , GLY F:403 , GLY F:404 , MG F:1476 , HOH F:2088 , HOH F:2090 , HOH F:2112 , HOH F:2113 , HOH F:2115BINDING SITE FOR RESIDUE CAP F1477
13BC4SOFTWARELYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , CAP G:1477BINDING SITE FOR RESIDUE MG G1476
14BC5SOFTWARETHR G:173 , LYS G:175 , LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , MG G:1476 , HOH G:2066 , HOH G:2107 , HOH G:2137 , HOH G:2157 , HOH G:2158 , HOH G:2159 , HOH G:2160 , GLU H:60 , THR H:65 , TRP H:66 , ASN H:123BINDING SITE FOR RESIDUE CAP G1477
15BC6SOFTWARELYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , CAP H:1477BINDING SITE FOR RESIDUE MG H1476
16BC7SOFTWAREGLU G:60 , THR G:65 , TRP G:66 , ASN G:123 , HOH G:2047 , THR H:173 , LYS H:175 , LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404 , MG H:1476 , HOH H:2098 , HOH H:2145 , HOH H:2146BINDING SITE FOR RESIDUE CAP H1477
17BC8SOFTWARETYR A:24 , THR A:68 , VAL A:69 , ASP A:72 , EDO A:1479BINDING SITE FOR RESIDUE EDO A1478
18BC9SOFTWARELYS A:18 , THR A:65 , TRP A:66 , THR A:67 , THR A:68 , EDO A:1478BINDING SITE FOR RESIDUE EDO A1479
19CC1SOFTWAREGLU A:52 , HOH A:2152 , PHE B:469BINDING SITE FOR RESIDUE EDO A1480
20CC2SOFTWAREARG A:295 , HIS A:298 , ASP A:473 , HOH A:2153BINDING SITE FOR RESIDUE EDO A1481
21CC3SOFTWARETYR H:24 , THR H:68 , VAL H:69 , ASP H:72 , EDO H:1479 , HOH H:2016 , HOH H:2147 , HOH H:2148BINDING SITE FOR RESIDUE EDO H1478
22CC4SOFTWARELYS H:18 , TYR H:20 , THR H:65 , TRP H:66 , THR H:67 , THR H:68 , EDO H:1478 , HOH H:2005 , HOH H:2148BINDING SITE FOR RESIDUE EDO H1479
23CC5SOFTWAREPHE G:469 , HOH G:2162 , GLU H:52BINDING SITE FOR RESIDUE EDO H1480
24CC6SOFTWARELYS H:466 , PHE H:467 , GLU H:468 , PHE H:469 , HOH H:2149BINDING SITE FOR RESIDUE EDO H1481
25CC7SOFTWAREARG H:295 , PHE H:345 , ASP H:473 , HOH H:2150BINDING SITE FOR RESIDUE EDO H1482
26CC8SOFTWARETYR G:24 , GLY G:64 , THR G:68 , VAL G:69 , ASP G:72 , HOH G:2161BINDING SITE FOR RESIDUE EDO G1478
27CC9SOFTWAREVAL G:17 , LYS G:18 , THR G:65 , TRP G:66 , THR G:67 , THR G:68 , HOH G:2016 , HOH G:2161BINDING SITE FOR RESIDUE EDO G1479
28DC1SOFTWARELYS G:466 , PHE G:467 , GLU G:468 , PHE G:469 , HOH G:2162BINDING SITE FOR RESIDUE EDO G1480
29DC2SOFTWAREARG G:295 , SER G:328 , GLY G:329 , GLU G:336 , GLY G:337 , THR G:342 , PHE G:345BINDING SITE FOR RESIDUE EDO G1481
30DC3SOFTWARETYR A:226 , LYS A:227 , HOH A:2071 , LYS O:49 , GLU O:55 , HOH O:2022BINDING SITE FOR RESIDUE EDO O1141
31DC4SOFTWAREGLY O:37 , ILE O:39 , PHE O:81 , GLY O:82 , CYS O:83BINDING SITE FOR RESIDUE EDO O1142
32DC5SOFTWARELEU E:270 , HOH E:2099 , LEU F:270 , HOH F:2132BINDING SITE FOR RESIDUE EDO F1478
33DC6SOFTWAREPRO E:176 , THR F:63 , GLY F:64 , THR F:65 , THR F:67 , VAL F:69 , ASP F:72 , HOH F:2007 , HOH F:2018 , HOH F:2022BINDING SITE FOR RESIDUE EDO F1479
34DC7SOFTWAREVAL F:17 , LYS F:18 , THR F:65 , TRP F:66 , THR F:67 , THR F:68BINDING SITE FOR RESIDUE EDO F1480
35DC8SOFTWAREPHE E:469 , GLU F:52BINDING SITE FOR RESIDUE EDO F1481
36DC9SOFTWARELYS F:466 , PHE F:467 , GLU F:468 , PHE F:469BINDING SITE FOR RESIDUE EDO F1482
37EC1SOFTWAREARG F:295 , SER F:328 , GLU F:336 , PHE F:345 , HOH F:2097BINDING SITE FOR RESIDUE EDO F1483
38EC2SOFTWARETYR C:24 , THR C:68 , VAL C:69 , ASP C:72BINDING SITE FOR RESIDUE EDO C1478
39EC3SOFTWARELYS C:18 , THR C:65 , TRP C:66 , THR C:67 , THR C:68BINDING SITE FOR RESIDUE EDO C1479
40EC4SOFTWAREGLY K:37 , TRP K:38 , ILE K:39 , GLY K:82BINDING SITE FOR RESIDUE EDO K1141
41EC5SOFTWARETYR B:24 , THR B:68 , VAL B:69 , ASP B:72 , EDO B:1479 , HOH B:2153BINDING SITE FOR RESIDUE EDO B1478
42EC6SOFTWARELYS B:18 , THR B:65 , TRP B:66 , THR B:67 , THR B:68 , EDO B:1478 , HOH B:2008BINDING SITE FOR RESIDUE EDO B1479
43EC7SOFTWAREGLU B:52 , ALA B:129BINDING SITE FOR RESIDUE EDO B1480
44EC8SOFTWAREHOH A:2152 , LYS B:466 , GLU B:468 , PHE B:469BINDING SITE FOR RESIDUE EDO B1481
45EC9SOFTWARETYR H:226 , LYS H:227 , ALA H:230 , LYS J:49 , GLU J:55 , ASP J:69 , HOH J:2019 , HOH J:2023BINDING SITE FOR RESIDUE EDO J1141
46FC1SOFTWARELEU C:270 , HOH C:2145 , HOH C:2146 , LEU D:270BINDING SITE FOR RESIDUE EDO C1480
47FC2SOFTWARELEU G:270 , GLY G:273 , PHE G:274 , LEU H:270 , THR H:271BINDING SITE FOR RESIDUE EDO G1482
48FC3SOFTWARELEU A:270 , GLY A:273 , PHE A:274 , HOH A:2154 , LEU B:270 , THR B:271BINDING SITE FOR RESIDUE EDO A1482
49FC4SOFTWARELYS D:18 , THR D:65 , TRP D:66 , THR D:67 , THR D:68BINDING SITE FOR RESIDUE EDO D1478
50FC5SOFTWAREPHE C:469 , GLU D:52 , HOH D:2005BINDING SITE FOR RESIDUE EDO D1479
51FC6SOFTWARELYS D:466 , GLU D:468 , PHE D:469BINDING SITE FOR RESIDUE EDO D1480
52FC7SOFTWARETYR E:24 , GLY E:64 , VAL E:69 , ASP E:72 , EDO E:1479BINDING SITE FOR RESIDUE EDO E1478
53FC8SOFTWARELYS E:18 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , EDO E:1478BINDING SITE FOR RESIDUE EDO E1479
54FC9SOFTWAREGLU E:52BINDING SITE FOR RESIDUE EDO E1480
55GC1SOFTWARELYS E:466 , GLU E:468 , PHE E:469 , HOH E:2159BINDING SITE FOR RESIDUE EDO E1481
56GC2SOFTWAREGLU E:336 , GLY E:337 , GLU E:338 , ASP E:473BINDING SITE FOR RESIDUE EDO E1482
57GC3SOFTWAREILE N:39 , GLY N:82 , CYS N:83BINDING SITE FOR RESIDUE EDO N1141
58GC4SOFTWAREGLY L:37 , TRP L:38 , ILE L:39 , GLY L:82BINDING SITE FOR RESIDUE EDO L1141
59GC5SOFTWAREGLY J:37 , GLY J:82 , CYS J:83 , HOH J:2036BINDING SITE FOR RESIDUE EDO J1142

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1C:247 -D:247
2E:247 -F:247
3G:247 -H:247

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Lys A:175 -Pro A:176
2Lys B:175 -Pro B:176
3Lys C:175 -Pro C:176
4Lys D:175 -Pro D:176
5Lys E:175 -Pro E:176
6Lys F:175 -Pro F:176
7Lys G:175 -Pro G:176
8Lys H:175 -Pro H:176

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 8)

Asymmetric/Biological Unit (1, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_RBL_CHLRE_001 *L46PRBL_CHLRE  ---  ---A/B/C/D/E/F/G/HP46P
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 8)

Asymmetric/Biological Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RUBISCO_LARGEPS00157 Ribulose bisphosphate carboxylase large chain active site.RBL_CHLRE196-204
 
 
 
 
 
 
 		  8A:196-204
B:196-204
C:196-204
D:196-204
E:196-204
F:196-204
G:196-204
H:196-204

(-) Exons   (0, 0)

(no "Exon" information available for 2VDI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:465
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d2vdia1 A:11-150 automated matches                                                                                                          d2vdia2 A:151-475 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------2vdiA01 A:22-148  [code=3.30.70.150, no name defined]                                                                          2vdiA02 A:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eee.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi A  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:468
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:468
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467        
            RBL_CHLRE     8 KAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d2vdib1 B:8-150 automated matches                                                                                                              d2vdib2 B:151-475 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains --------------2vdiB01 B:22-148  [code=3.30.70.150, no name defined]                                                                          2vdiB02 B:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vdi B   8 KAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    17        27        37        47        57        67        77        87        97      |107       117       127       137       147   |   157       167       177       187       197   |   207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367 |     377       387       397       407       417       427       437       447       457       467        
                                                                                                                          104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:465
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d2vdic1 C:11-150 automated matches                                                                                                          d2vdic2 C:151-475 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------2vdiC01 C:22-148  [code=3.30.70.150, no name defined]                                                                          2vdiC02 C:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhh........hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eee.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi C  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:465
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d2vdid1 D:11-150 automated matches                                                                                                          d2vdid2 D:151-475 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------2vdiD01 D:22-148  [code=3.30.70.150, no name defined]                                                                          2vdiD02 D:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi D  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:465
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d2vdie1 E:11-150 automated matches                                                                                                          d2vdie2 E:151-475 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------2vdiE01 E:22-148  [code=3.30.70.150, no name defined]                                                                          2vdiE02 E:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eee.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi E  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:465
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d2vdif1 F:11-150 automated matches                                                                                                          d2vdif2 F:151-475 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------2vdiF01 F:22-148  [code=3.30.70.150, no name defined]                                                                          2vdiF02 F:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eee.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi F  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:466
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:466
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469      
            RBL_CHLRE    10 GAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d2vdig1 G:10-150 automated matches                                                                                                           d2vdig2 G:151-475 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------2vdiG01 G:22-148  [code=3.30.70.150, no name defined]                                                                          2vdiG02 G:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhh.hhhh...eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eee.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi G  10 GAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    19        29        39        49        59        69        79        89        99    |  109       119       129       139       149 |     159       169       179       189       199 |     209       219       229       239       249      |259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469      
                                                                                                                        104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain H from PDB  Type:PROTEIN  Length:465
 aligned with RBL_CHLRE | P00877 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
            RBL_CHLRE    11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
               SCOP domains d2vdih1 H:11-150 automated matches                                                                                                          d2vdih2 H:151-475 automated matches                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -----------2vdiH01 H:22-148  [code=3.30.70.150, no name defined]                                                                          2vdiH02 H:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
           Pfam domains (1) ----------RuBisCO_large_N-2vdiH09 H:21-146                                                                                              -------RuBisCO_large-2vdiH01 H:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (1)
           Pfam domains (2) ----------RuBisCO_large_N-2vdiH10 H:21-146                                                                                              -------RuBisCO_large-2vdiH02 H:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (2)
           Pfam domains (3) ----------RuBisCO_large_N-2vdiH11 H:21-146                                                                                              -------RuBisCO_large-2vdiH03 H:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (3)
           Pfam domains (4) ----------RuBisCO_large_N-2vdiH12 H:21-146                                                                                              -------RuBisCO_large-2vdiH04 H:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (4)
           Pfam domains (5) ----------RuBisCO_large_N-2vdiH13 H:21-146                                                                                              -------RuBisCO_large-2vdiH05 H:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (5)
           Pfam domains (6) ----------RuBisCO_large_N-2vdiH14 H:21-146                                                                                              -------RuBisCO_large-2vdiH06 H:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (6)
           Pfam domains (7) ----------RuBisCO_large_N-2vdiH15 H:21-146                                                                                              -------RuBisCO_large-2vdiH07 H:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (7)
           Pfam domains (8) ----------RuBisCO_large_N-2vdiH16 H:21-146                                                                                              -------RuBisCO_large-2vdiH08 H:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (8)
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhh...eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee...hhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -----------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi H  11 AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYpIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGpPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTkDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVcAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWcSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150|      160       170       180       190       200|      210       220       230       240       250     | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
                                                                                                                       104-HYP                                        151-HYP                                           201-KCX                                                256-SMC                                                                                                          369-SMC                                                                                                      


Chain I from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2vdii_ I: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                   SCOP domains
               CATH domains -2vdiI00 I:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi I   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain J from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2vdij_ J: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                   SCOP domains
               CATH domains -2vdiJ00 J:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi J   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain K from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2vdik_ K: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                   SCOP domains
               CATH domains -2vdiK00 K:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi K   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain L from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2vdil_ L: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                   SCOP domains
               CATH domains -2vdiL00 L:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi L   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain M from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2vdim_ M: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                   SCOP domains
               CATH domains -2vdiM00 M:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi M   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain N from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2vdin_ N: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                   SCOP domains
               CATH domains -2vdiN00 N:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi N   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain O from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2vdio_ O: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                   SCOP domains
               CATH domains -2vdiO00 O:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi O   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME                                                                                                                                       


Chain P from PDB  Type:PROTEIN  Length:140
 aligned with RBS1_CHLRE | P00873 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:140
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185
           RBS1_CHLRE    46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 185
               SCOP domains d2vdip_ P: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                   SCOP domains
               CATH domains -2vdiP00 P:2-140  [code=3.30.190.10, no name defined]                                                                                        CATH domains
           Pfam domains (1) ----------RuBisCO_small-2vdiP01 P:11-127                                                                                       ------------- Pfam domains (1)
           Pfam domains (2) ----------RuBisCO_small-2vdiP02 P:11-127                                                                                       ------------- Pfam domains (2)
           Pfam domains (3) ----------RuBisCO_small-2vdiP03 P:11-127                                                                                       ------------- Pfam domains (3)
           Pfam domains (4) ----------RuBisCO_small-2vdiP04 P:11-127                                                                                       ------------- Pfam domains (4)
           Pfam domains (5) ----------RuBisCO_small-2vdiP05 P:11-127                                                                                       ------------- Pfam domains (5)
           Pfam domains (6) ----------RuBisCO_small-2vdiP06 P:11-127                                                                                       ------------- Pfam domains (6)
           Pfam domains (7) ----------RuBisCO_small-2vdiP07 P:11-127                                                                                       ------------- Pfam domains (7)
           Pfam domains (8) ----------RuBisCO_small-2vdiP08 P:11-127                                                                                       ------------- Pfam domains (8)
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeeehhhhh...hhhhhhh.............eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee.........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vdi P   1 mMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV 140
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140
                            1-MME
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: RuBisCO_large] (36)
(-)
Clan: no clan defined [family: RuBisCO_large_N] (27)
(-)
Clan: no clan defined [family: RuBisCO_small] (23)

(-) Gene Ontology  (13, 23)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (RBL_CHLRE | P00877)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009853    photorespiration    A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019253    reductive pentose-phosphate cycle    The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain I,J,K,L,M,N,O,P   (RBS1_CHLRE | P00873)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009853    photorespiration    A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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  RBS1_CHLRE | P00873
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  4.1.1.39
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBL_CHLRE | P00877: 1gk8 1ir2 1uw9 1uwa 1uzd 1uzh 2v63 2v67 2v68 2v69 2v6a 2vdh 5bs2
        RBS1_CHLRE | P00873: 1gk8 1uw9 1uwa 1uzd 1uzh 2v63 2v67 2v68 2v69 2v6a 2vdh

(-) Related Entries Specified in the PDB File

1gk8 RUBISCO FROM CHLAMYDOMONAS REINHARDTII
1ir2 CRYSTAL STRUCTURE OF ACTIVATED RIBULOSE-1,5 -BISPHOSPHATECARBOXYLASE/OXYGENASE (RUBISCO) FROM GREEN ALGA,CHLAMYDOMONAS REINHARDTII COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE ( 2-CABP)
1uw9 L290F-A222T CHLAMYDOMONAS RUBISCO MUTANT
1uwa L290F MUTANT RUBISCO FROM CHLAMYDOMONAS
1uzd CHLAMYDOMONAS,SPINACH CHIMERIC RUBISCO
1uzh A CHIMERIC CHLAMYDOMONAS, SPINACH RUBISCO ENZYME
2v63 CRYSTAL STRUCTURE OF RUBISCO FROM CHLAMYDOMONAS REINHARDTII WITH A LARGE-SUBUNIT V331A MUTATION
2v67 CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT SUPRESSOR MUTATION T342I
2v68 CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH LARGE-SUBUNIT MUTATIONS V331A, T342I
2v69 CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT MUTATION D473E
2v6a CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH LARGE-SUBUNIT MUTATIONS V331A, G344S
2vdh CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT C172S MUTATION