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(-) Description

Title :  ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2-CARBOXYARABINITOL BISPHOSPHATE
 
Authors :  I. Andersson, S. Knight, C. -I. Branden
Date :  22 Feb 96  (Deposition) - 01 Aug 96  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,C,E,G,I,J,K,L
Biol. Unit 1:  A,C,E,G,I,J,K,L  (2x)
Keywords :  Photosynthesis, Carbon Dioxide Fixation, Photorespiration, Lyase, Oxidoreductase, Monooxygenase, Chloroplast, Lyase (Carbon-Carbon) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Andersson
Large Structures At High Resolution: The 1. 6 A Crystal Structure Of Spinach Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Complexed With 2-Carboxyarabinitol Bisphosphate.
J. Mol. Biol. V. 259 160 1996
PubMed-ID: 8648644  |  Reference-DOI: 10.1006/JMBI.1996.0310
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE
    Chains: A, C, E, G
    EC Number: 4.1.1.39
    Organ: LEAF
    Organism Common: SPINACH
    Organism Scientific: SPINACIA OLERACEA
    Organism Taxid: 3562
    Synonym: RUBISCO
 
Molecule 2 - RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE
    Chains: I, J, K, L
    EC Number: 4.1.1.39
    Organ: LEAF
    Organism Common: SPINACH
    Organism Scientific: SPINACIA OLERACEA
    Organism Taxid: 3562
    Synonym: RUBISCO

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ACEGIJKL
Biological Unit 1 (2x): ACEGIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1CAP4Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1CAP8Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX8Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREKCX A:201 , ASP A:203 , GLU A:204 , CAP A:477BINDING SITE FOR RESIDUE MG A 476
02AC2SOFTWAREKCX C:201 , ASP C:203 , GLU C:204 , CAP C:477BINDING SITE FOR RESIDUE MG C 476
03AC3SOFTWAREKCX E:201 , ASP E:203 , GLU E:204 , CAP E:477BINDING SITE FOR RESIDUE MG E 476
04AC4SOFTWAREKCX G:201 , ASP G:203 , GLU G:204 , CAP G:477BINDING SITE FOR RESIDUE MG G 476
05AC5SOFTWARETHR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:476 , HOH A:483 , HOH A:511 , HOH A:621 , HOH A:625 , HOH A:673 , HOH A:739 , HOH A:748 , GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , HOH E:612BINDING SITE FOR RESIDUE CAP A 477
06AC6SOFTWAREGLU C:60 , THR C:65 , TRP C:66 , ASN C:123 , THR C:173 , LYS C:175 , LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , MG C:476 , HOH C:495 , HOH C:505 , HOH C:546 , HOH C:663 , HOH C:664 , HOH C:722 , HOH C:723 , HOH C:752BINDING SITE FOR RESIDUE CAP C 477
07AC7SOFTWAREGLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:476 , HOH E:479 , HOH E:492 , HOH E:502 , HOH E:662 , HOH E:666 , HOH E:668 , HOH E:722BINDING SITE FOR RESIDUE CAP E 477
08AC8SOFTWAREGLU G:60 , THR G:65 , TRP G:66 , ASN G:123 , THR G:173 , LYS G:175 , LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , MG G:476 , HOH G:480 , HOH G:495 , HOH G:617 , HOH G:682 , HOH G:683 , HOH G:692 , HOH G:712 , HOH G:729 , HOH G:732BINDING SITE FOR RESIDUE CAP G 477
09ACAUNKNOWNKCX A:201 , ASP A:203 , GLU A:204 , MG A:476CATALYTIC RESIDUES
10ACCUNKNOWNKCX C:201 , ASP C:203 , GLU C:204 , MG C:476CATALYTIC RESIDUES
11ACEUNKNOWNKCX E:201 , ASP E:203 , GLU E:204 , MG E:476CATALYTIC RESIDUES
12ACGUNKNOWNKCX G:201 , ASP G:203 , GLU G:204 , MG G:476CATALYTIC RESIDUES

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:247 -E:247
2C:247 -C:247
3G:247 -G:247

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:175 -Pro A:176
2Lys C:175 -Pro C:176
3Lys E:175 -Pro E:176
4Lys G:175 -Pro G:176

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 8RUC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 8RUC)

(-) Exons   (0, 0)

(no "Exon" information available for 8RUC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d8ruca2 A:9-147 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d8ruca1 A:148-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -------------8rucA01 A:22-148  [code=3.30.70.150, no name defined]                                                                          8rucA02 A:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhh...........eeeeeeee......hhhhhhhhhhh.........hhhhh..hhh...eeeeeee.......eeeeeee.hhh.....hhhhhhhhh..hhh.....eeeeeeee..hhhhhh.......hhhhhhhh......eeeee........hhhhhhhhhhhhhh...eee............hhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhh...eeeeehhhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh.......hhh..............eeee.....hhhhhhhhhhh...eeee..hhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 8ruc A   9 ASVEFKAGVKDYKLTYYTPEYETLDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTNLDRYKGRCYHIEPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEDMMKRAVFARELGVPIVMHDYLTGGFTANTTLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDYTEKDRSRGIYFTQSWVSTPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEVWKEIKFEFPAMDTV 475
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198  |    208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       
                                                                                                                                                                                                                          201-KCX                                                                                                                                                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d8rucc2 C:9-147 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d8rucc1 C:148-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -------------8rucC01 C:22-148  [code=3.30.70.150, no name defined]                                                                          8rucC02 C:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhh...........eeeeeeee......hhhhhhhhhhh.........hhhhh..hhh...eeeeeee.......eeeeeee.hhh.....hhhhhhhhh..hhh.....eeeeeeee..hhhhhh.......hhhhhhhh......eeeee........hhhhhhhhhhhhhh...eee............hhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhh...eeeeehhhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh.......hhh..............eeee.....hhhhhhhhhhh...eeee..hhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 8ruc C   9 ASVEFKAGVKDYKLTYYTPEYETLDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTNLDRYKGRCYHIEPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEDMMKRAVFARELGVPIVMHDYLTGGFTANTTLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDYTEKDRSRGIYFTQSWVSTPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEVWKEIKFEFPAMDTV 475
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198  |    208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       
                                                                                                                                                                                                                          201-KCX                                                                                                                                                                                                                                                                              


Chain E from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d8ruce2 E:9-147 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d8ruce1 E:148-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -------------8rucE01 E:22-148  [code=3.30.70.150, no name defined]                                                                          8rucE02 E:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhh...........eeeeeeee......hhhhhhhhhhh.........hhhhh..hhh...eeeeeee.......eeeeeee.hhh.....hhhhhhhhh..hhh.....eeeeeeee..hhhhhh.......hhhhhhhh......eeeee........hhhhhhhhhhhhhh...eee............hhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhh...eeeeehhhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh.......hhh..............eeee.....hhhhhhhhhhh...eeee..hhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 8ruc E   9 ASVEFKAGVKDYKLTYYTPEYETLDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTNLDRYKGRCYHIEPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEDMMKRAVFARELGVPIVMHDYLTGGFTANTTLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDYTEKDRSRGIYFTQSWVSTPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEVWKEIKFEFPAMDTV 475
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198  |    208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       
                                                                                                                                                                                                                          201-KCX                                                                                                                                                                                                                                                                              


Chain G from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d8rucg2 G:9-147 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d8rucg1 G:148-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -------------8rucG01 G:22-148  [code=3.30.70.150, no name defined]                                                                          8rucG02 G:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhh...........eeeeeeee......hhhhhhhhhhh.........hhhhh..hhh...eeeeeee.......eeeeeee.hhh.....hhhhhhhhh..hhh.....eeeeeeee..hhhhhh.......hhhhhhhh......eeeee........hhhhhhhhhhhhhh...eee............hhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhh...eeeeehhhh.hhhhhhhhhhhhhh..eeeee...hhhhh........hhhhhhhhhhh...eee...........hhhhhhhhhhhh.......hhh..............eeee.....hhhhhhhhhhh...eeee..hhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 8ruc G   9 ASVEFKAGVKDYKLTYYTPEYETLDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTNLDRYKGRCYHIEPVAGEENQYICYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTkDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEDMMKRAVFARELGVPIVMHDYLTGGFTANTTLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDYTEKDRSRGIYFTQSWVSTPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNTIIREATKWSPELAAACEVWKEIKFEFPAMDTV 475
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198  |    208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       
                                                                                                                                                                                                                          201-KCX                                                                                                                                                                                                                                                                              


Chain I from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d8ruci_ I: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  SCOP domains
               CATH domains 8rucI00 I:1-123  [code=3.30.190.10, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhh..eeeeeee......................eee.........hhhhhhhhhhhhhh....eeeeeee........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 8ruc I   1 MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain J from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d8rucj_ J: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  SCOP domains
               CATH domains 8rucJ00 J:1-123  [code=3.30.190.10, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhh..eeeeeee......................eee.........hhhhhhhhhhhhhh....eeeeeee........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 8ruc J   1 MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain K from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d8ruck_ K: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  SCOP domains
               CATH domains 8rucK00 K:1-123  [code=3.30.190.10, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhh..eeeeeee......................eee.........hhhhhhhhhhhhhh....eeeeeee........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 8ruc K   1 MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY 123
                                    10        20        30        40        50        60        70        80        90       100       110       120   


Chain L from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d8rucl_ L: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  SCOP domains
               CATH domains 8rucL00 L:1-123  [code=3.30.190.10, no name defined]                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhh..eeeeeee......................eee.........hhhhhhhhhhhhhh....eeeeeee........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 8ruc L   1 MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY 123
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 8RUC)

(-) Gene Ontology  (13, 23)

Asymmetric Unit(hide GO term definitions)

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  8ruc
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    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RBL_SPIOL | P00875
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RBS1_SPIOL | P00870
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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  4.1.1.39
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    Pathway: KEGG | MetaCyc
 
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  (no 'MIM ID' available)
    Disease Information: OMIM
 
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    Age Related Information: GenAge

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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
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Access by UniProt ID/Accession number
  RBL_SPIOL | P00875
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RBS1_SPIOL | P00870
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBL_SPIOL | P00875: 1aa1 1aus 1ir1 1rbo 1rco 1rcx 1rxo 1upm 1upp
        RBS1_SPIOL | P00870: 1rbo 1rco 1rcx 1rxo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 8RUC)