Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 5b - Page 1:

Structures with an automatically assigned single-kink helical axis.
All structures included in this Table have 12 or less base pairs.
Sigma2 of a single-kink line is only slightly smaller (< 0.2) than for the next best model(s). For small kink angles it is not possible to differentiate manually between single-kink or double-kink helical axes.
The structures are listed by the number of base pairs (bp).

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Number of structures: 59 (this pages) / 179 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
197d	adh059	E   |    H   |    B	8	nuc	diff	single-kink line	0.129		16			5	3
						circular line	0.160	52
						straight line	0.235
1au5	------	E   |    H   |    B	8	nuc	NMR	single-kink line	0.833		56			4	4
						circular line	0.867	15
1azp	pdr047	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.632		35			2	6
						circular line	0.736	41
1bf4	pd0088	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.785		37			2	6
						straight line	0.857
						circular line	0.945	54
1bnz	pd0012	E   |    H   |    B	8	prot-nuc	diff	single-kink line	1.004		35			3	5
						circular line	1.034	29
1c8c	pd0143	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.465		31			2	6
						circular line	0.659	42
1ca5	pd0119	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.429		26			3	5
						circular line	0.555	35
1nk6	pd0379	E   |    H   |    B	8	prot-nuc	diff	single-kink line	0.264		24			6	2
						circular line	0.445	60
1rxa	arh063	E   |    H   |    B	8	nuc	diff	single-kink line	0.229		30			4	4
						circular line	0.336	24
370d	adh0104	E   |    H   |    B	8	nuc	diff	single-kink line	0.137		13			5	3
						circular line	0.158	66
						straight line	0.231
409d	ar0004	E   |    H   |    B	8	nuc	diff	single-kink line	0.237		29			4	4
						circular line	0.336	25
421d	dr0003	E   |    H   |    B	8	nuc	diff	single-kink line	0.071		13			3	5
						circular line	0.121	75
						straight line	0.211
438d	ar0011	E   |    H   |    B	8	nuc	diff	single-kink line	0.262		21			3	5
						circular line	0.289	40
1c4l	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.873		45			5	4
						circular line	0.910	19
1dk9	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.051		5			3	5
						circular line	0.056	221
						straight line	0.059
1hg9	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.117		14			4	5
						circular line	0.136	58
1l3s	pd0300	E   |    H   |    B	9	prot-nuc	diff	single-kink line	0.088		13			7	2
						circular line	0.145	145
						straight line	0.171
1nk7	pd0380	E   |    H   |    B	9	prot-nuc	diff	single-kink line	0.207		14			7	2
						straight line	0.250
						circular line	0.255	127
1oka	------	E   |    H   |    B	9	nuc	NMR	single-kink line	0.146		16			5	4
						circular line	0.147	52
1qrv	pd0110	E   |    H   |    B	9	prot-nuc	diff	single-kink line	0.412		48			4	5
						circular line	0.506	16
479d	ah0005	E   |    H   |    B	9	nuc	diff	single-kink line	0.521		19			5	3
						circular line	0.698	51
126d	bdj051	E   |    H   |    B	10	nuc	diff	single-kink line	0.500		21			7	3
						circular line	0.606	74
137d	adj050	E   |    H   |    B	10	nuc	diff	single-kink line	0.312		25			5	5
						circular line	0.348	35
138d	adj051	E   |    H   |    B	10	nuc	diff	single-kink line	0.240		24			5	5
						circular line	0.291	37
196d	bdj060	E   |    H   |    B	10	nuc	diff	single-kink line	0.102		5			4	5
						circular line	0.112	219
						straight line	0.130
1a1f	pdt055	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.252		15			7	3
						circular line	0.424	91
1a1g	pdt056	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.111		8			6	4
						circular line	0.112	132
						straight line	0.208
1a1i	pdt059	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.230		12			6	4
						circular line	0.249	92
1a1j	pdt060	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.170		14			6	4
						circular line	0.206	73
1b01	pd0091	E   |    H   |    B	10	prot-nuc	diff	single-kink line	1.128		40			6	4
						circular line	1.182	27
1bpx	pde0126	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.226		11			3	7
						circular line	0.261	139
						straight line	0.298
1bpy	pde0125	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.106		11			3	7
						circular line	0.178	125
						straight line	0.281
1cvx	dd0020	E   |    H   |    B	10	nuc	diff	single-kink line	0.150		8			4	6
						circular line	0.169	136
						straight line	0.272
1d20	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.098		8			7	3
						circular line	0.109	188
						straight line	0.139
1d56	bdj036	E   |    H   |    B	10	nuc	diff	single-kink line	0.191		9			5	5
						circular line	0.192	117
						straight line	0.335
1d57	bdj037	E   |    H   |    B	10	nuc	diff	single-kink line	0.197		8			5	5
						circular line	0.204	129
						straight line	0.307
1d96	ahj015	E   |    H   |    B	10	nuc	diff	single-kink line	0.105		22			4	6
						circular line	0.300	44
1d9h	ah0006	E   |    H   |    B	10	nuc	diff	single-kink line	0.148		30			4	6
						circular line	0.306	29
1d9r	bd0025	E   |    H   |    B	10	nuc	diff	single-kink line	0.140		26			5	5
						circular line	0.339	41
1dcv	bd0028	E   |    H   |    B	10	nuc	diff	single-kink line	0.178		12			5	5
						circular line	0.210	85
1dno	ah0007	E   |    H   |    B	10	nuc	diff	single-kink line	0.128		19			3	7
						circular line	0.235	54
1drr	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.104		16			6	4
						circular line	0.110	60
1evp	ah0011	E   |    H   |    B	10	nuc	diff	single-kink line	0.368		28			5	5
						circular line	0.563	31
1f5e	------	E   |    H   |    B	10	prot-nuc	NMR	single-kink line	0.543		22			6	4
						circular line	0.625	54
1g9z	pd0190	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.172		20			6	4
						circular line	0.263	54
1h9d	pd0210	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.255		11			6	3
						circular line	0.342	126
						straight line	0.400
1jk2	pd0231	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.110		8			5	5
						circular line	0.113	134
						straight line	0.212
1mq3	pd0344	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.077		12			4	6
						circular line	0.127	96
1mxk	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.437		37			6	4
						circular line	0.555	29
1n1n	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.068		11			5	5
						circular line	0.087	121
1n3e	pd0360	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.063		13			5	5
						circular line	0.104	80
1n3f	pd0361	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.154		11			4	6
						circular line	0.223	112
1ofx	ahj040	E   |    H   |    B	10	nuc	diff	single-kink line	0.144		25			4	6
						circular line	0.224	36
1pib	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.212		11			2	7
						straight line	0.229
						circular line	0.262	200
1ql5	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.208		12			6	4
						circular line	0.228	96
1rn9	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.362		17			4	6
						circular line	0.370	61
1zaa	pdt006	E   |    H   |    B	10	prot-nuc	diff	single-kink line	0.208		9			5	4
						circular line	0.211	121
						straight line	0.309
221d	adj067	E   |    H   |    B	10	nuc	diff	single-kink line	0.319		32			5	5
						circular line	0.322	27
222d	ahj068	E   |    H   |    B	10	nuc	diff	single-kink line	0.171		24			4	6
						circular line	0.274	38

Abbreviations