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(-) Description

Title :  HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX
 
Authors :  H. Robinson, Y. -G. Gao, B. S. Mccrary, S. P. Edmondson, J. W. Shriver, A. H. -J. Wang
Date :  19 Nov 97  (Deposition) - 13 Jan 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Complex (Chromatin Protein/Dna), Dna-Binding, Archea Kinked- Dna, Minor-Groove Binding, Intercalation, Dna Binding Protein/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Robinson, Y. G. Gao, B. S. Mccrary, S. P. Edmondson, J. W. Shriver, A. H. Wang
The Hyperthermophile Chromosomal Protein Sac7D Sharply Kinks Dna.
Nature V. 392 202 1998
PubMed-ID: 9515968  |  Reference-DOI: 10.1038/32455
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3')
    Chains: B, C
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SULFOLOBUS ACIDOCALDARIUS
    Organism Taxid: 2285
    Synonym: 7 KD HYPERTHERMOPHILE DNA-BINDING PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1AZP)

(-) Sites  (0, 0)

(no "Site" information available for 1AZP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1AZP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1AZP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AZP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1AZP)

(-) Exons   (0, 0)

(no "Exon" information available for 1AZP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:66
 aligned with DN7D_SULAC | P13123 from UniProtKB/Swiss-Prot  Length:66

    Alignment length:66
                                    10        20        30        40        50        60      
           DN7D_SULAC     1 MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK  66
               SCOP domains d1azpa_ A: DNA-binding protein                                     SCOP domains
               CATH domains 1azpA00 A:1-66  [code=2.40.50.40, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeeehhh...eeee..eeeeeeee..eeeeeeeehhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 1azp A   1 MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK  66
                                    10        20        30        40        50        60      


Chain B from PDB  Type:DNA  Length:8
                                        
                 1azp B 101 GCGATCGC 108


Chain C from PDB  Type:DNA  Length:8
                                        
                 1azp C 109 GCGATCGC 116
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AZP)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (DN7D_SULAC | P13123)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0004521    endoribonuclease activity    Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.
biological process
    GO:0090502    RNA phosphodiester bond hydrolysis, endonucleolytic    The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DN7D_SULAC | P13123: 1azq 1bf4 1ca5 1ca6 1sap 1wd0 1wd1 1wto 1wtp 1wtq 1wtr 1wtv 1wtw 1wtx 1wvl 1xx8 1xyi 2xiw 4cj1 4cj2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1AZP)