Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 5b - Page 2:

Structures with an automatically assigned single-kink helical axis.
All structures included in this Table have 12 or less base pairs.
Sigma2 of a single-kink line is only slightly smaller (< 0.2) than for the next best model(s). For small kink angles it is not possible to differentiate manually between single-kink or double-kink helical axes.
The structures are listed by the number of base pairs (bp).

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Number of structures: 59 (this pages) / 179 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
226d	------	E   |    H   |    B	10	nuc	NMR	single-kink line	0.174		10			4	6
						circular line	0.190	124
						straight line	0.290
260d	adj075	E   |    H   |    B	10	nuc	diff	single-kink line	0.111		18			5	5
						circular line	0.179	48
320d	adj081	E   |    H   |    B	10	nuc	diff	single-kink line	0.391		31			5	5
						circular line	0.420	29
327d	adjb88	E   |    H   |    B	10	nuc	diff	single-kink line	0.221		20			5	5
						circular line	0.273	42
334d	gdj054	E   |    H   |    B	10	nuc	diff	single-kink line	0.309		19			7	3
						circular line	0.445	85
348d	adj0102	E   |    H   |    B	10	nuc	diff	single-kink line	0.398		26			5	5
						circular line	0.503	34
349d	adj0103	E   |    H   |    B	10	nuc	diff	single-kink line	0.397		24			5	5
						circular line	0.492	37
358d	gdjb55	E   |    H   |    B	10	nuc	diff	single-kink line	0.038		12			5	5
						circular line	0.044	79
365d	gdj057	E   |    H   |    B	10	nuc	diff	single-kink line	0.088		10			5	5
						circular line	0.113	109
383d	adjb110	E   |    H   |    B	10	nuc	diff	single-kink line	0.218		33			5	5
						circular line	0.270	25
384d	adjb111	E   |    H   |    B	10	nuc	diff	single-kink line	0.519		20			8	2
						circular line	0.564	74
						straight line	0.664
395d	adj0112	E   |    H   |    B	10	nuc	diff	single-kink line	0.051		19			5	5
						circular line	0.120	44
396d	adj0113	E   |    H   |    B	10	nuc	diff	single-kink line	0.279		28			5	5
						circular line	0.457	32
401d	ad0001	E   |    H   |    B	10	nuc	diff	single-kink line	0.356		26			5	5
						circular line	0.496	34
404d	ah0001	E   |    H   |    B	10	nuc	diff	single-kink line	0.232		21			5	5
						circular line	0.411	45
408d	bdd003	E   |    H   |    B	10	nuc	diff	single-kink line	0.188		7			5	5
						circular line	0.208	156
						straight line	0.261
411d	ah0003	E   |    H   |    B	10	nuc	diff	single-kink line	0.148		26			4	6
						circular line	0.256	35
412d	ah0004	E   |    H   |    B	10	nuc	diff	single-kink line	0.141		28			4	6
						circular line	0.246	32
414d	ad0002	E   |    H   |    B	10	nuc	diff	single-kink line	0.222		27			5	5
						circular line	0.323	34
440d	ad0003	E   |    H   |    B	10	nuc	diff	single-kink line	0.246		29			4	6
						circular line	0.374	32
474d	gdjb58	E   |    H   |    B	10	nuc	diff	single-kink line	0.029		4			4	6
						circular line	0.036	283
						straight line	0.054
1afz	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.116		5			5	6
						circular line	0.124	239
						straight line	0.143
1axv	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.467		19			6	5
						circular line	0.589	68
1djd	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.771		22			5	6
						circular line	0.844	62
1dsi	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.463		17			8	3
						circular line	0.530	89
1e3o	pd0225	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.563		24			7	4
						circular line	0.744	54
1eyu	pd0147	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.352		13			5	6
						circular line	0.414	96
1fj5	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.387		30			6	5
						circular line	0.408	35
1gcc	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.064		13			4	7
						circular line	0.140	96
1hwv	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.286		30			8	3
						circular line	0.464	60
1i7v	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.701		22			5	6
						circular line	0.874	60
1ijw	pd0213	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.208		13			4	7
						circular line	0.225	97
1l3u	pd0302	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.166		9			4	7
						circular line	0.179	138
						straight line	0.300
1lcc	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.207		22			6	5
						circular line	0.216	47
1le9	pd0309	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.171		10			5	6
						circular line	0.200	115
1msf	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.323		12			7	4
						circular line	0.448	121
1mxj	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.063		11			4	7
						circular line	0.106	111
1njw	pd0372	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.101		9			5	6
						circular line	0.117	131
						straight line	0.276
1njx	pd0373	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.205		14			5	6
						circular line	0.281	83
1nk0	pd0376	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.059		7			5	6
						circular line	0.069	175
						straight line	0.157
1o3q	pd0398	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.663		27			6	5
						circular line	0.713	43
1o3r	pd0399	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.347		33			6	5
						circular line	0.391	34
1onm	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.050		11			4	7
						circular line	0.096	111
1pqq	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.700		24			5	6
						circular line	0.730	45
1qby	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.215		14			8	3
						circular line	0.393	174
1skp	------	E   |    H   |    B	11	nuc	NMR	single-kink line	0.144		15			6	5
						circular line	0.199	64
1t7p	pde0135	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.248		9			4	7
						circular line	0.268	142
						straight line	0.358
1vkx	pdr033	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.113		9			7	4
						circular line	0.175	172
						straight line	0.253
1yui	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.118		15			5	6
						circular line	0.138	84
1yuj	------	E   |    H   |    B	11	prot-nuc	NMR	single-kink line	0.097		13			6	5
						circular line	0.127	97
4bdp	pde0133	E   |    H   |    B	11	prot-nuc	diff	single-kink line	0.131		14			5	6
						circular line	0.204	80
101d	gdlb31	E   |    H   |    B	12	nuc	diff	single-kink line	0.061		7			7	5
						circular line	0.071	178
						straight line	0.224
102d	gdl032	E   |    H   |    B	12	nuc	diff	single-kink line	0.053		8			4	8
						circular line	0.073	175
						straight line	0.234
127d	gdl022	E   |    H   |    B	12	nuc	diff	single-kink line	0.099		10			5	7
						circular line	0.124	132
128d	gdlb19	E   |    H   |    B	12	nuc	diff	single-kink line	0.097		9			5	7
						circular line	0.167	168
129d	gdl021	E   |    H   |    B	12	nuc	diff	single-kink line	0.097		9			5	7
						circular line	0.104	151
130d	gdlb20	E   |    H   |    B	12	nuc	diff	single-kink line	0.149		10			5	6
						circular line	0.210	124
166d	gdl027	E   |    H   |    B	12	nuc	diff	single-kink line	0.060		9			4	8
						circular line	0.095	162
194d	bdl059	E   |    H   |    B	12	nuc	diff	single-kink line	0.104		14			4	8
						circular line	0.195	115

Abbreviations