Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 5b - Page 3:

Structures with an automatically assigned single-kink helical axis.
All structures included in this Table have 12 or less base pairs.
Sigma2 of a single-kink line is only slightly smaller (< 0.2) than for the next best model(s). For small kink angles it is not possible to differentiate manually between single-kink or double-kink helical axes.
The structures are listed by the number of base pairs (bp).

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Number of structures: 61 (this pages) / 179 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
1a66	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.118		11			3	9
						circular line	0.169	181
						straight line	0.300
1aio	ddlb73	E   |    H   |    B	12	nuc	diff	single-kink line	0.221		30			6	6
						circular line	0.383	35
1bbx	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.692		12			6	6
						circular line	0.702	115
1bna	bdl001	E   |    H   |    B	12	nuc	diff	single-kink line	0.070		11			5	7
						circular line	0.076	118
1bw7	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.214		8			4	8
						circular line	0.257	207
						straight line	0.271
1coc	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.262		24			5	7
						circular line	0.271	58
1d30	gdl008	E   |    H   |    B	12	nuc	diff	single-kink line	0.056		9			4	8
						circular line	0.104	189
						straight line	0.240
1d45	gdl012	E   |    H   |    B	12	nuc	diff	single-kink line	0.069		12			4	8
						circular line	0.097	124
1d46	gdl013	E   |    H   |    B	12	nuc	diff	single-kink line	0.071		10			2	10
						straight line	0.115
						circular line	0.119	462
1d85	gdlb17	E   |    H   |    B	12	nuc	diff	single-kink line	0.126		10			6	6
						circular line	0.158	128
1d99	bdl011	E   |    H   |    B	12	nuc	diff	single-kink line	0.088		14			5	7
						circular line	0.102	91
1dn9	bdl007	E   |    H   |    B	12	nuc	diff	single-kink line	0.085		6			3	9
						straight line	0.101
						circular line	0.107	511
1dnh	gdl002	E   |    H   |    B	12	nuc	diff	single-kink line	0.108		10			5	7
						circular line	0.132	130
1dxn	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.608		20			3	9
						circular line	0.729	106
1eel	dd0025	E   |    H   |    B	12	nuc	diff	single-kink line	0.107		8			3	8
						circular line	0.142	226
						straight line	0.213
1flo	pd0178	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.129		21			5	7
						circular line	0.281	62
1fmq	dd0034	E   |    H   |    B	12	nuc	diff	single-kink line	0.090		11			4	8
						circular line	0.147	149
1fms	dd0035	E   |    H   |    B	12	nuc	diff	single-kink line	0.075		11			4	8
						circular line	0.105	131
1hq7	bd0047	E   |    H   |    B	12	nuc	diff	single-kink line	0.094		5			5	7
						circular line	0.104	253
						straight line	0.152
1i3t	bd0048	E   |    H   |    B	12	nuc	diff	single-kink line	0.080		11			5	7
						circular line	0.107	122
1i47	bd0049	E   |    H   |    B	12	nuc	diff	single-kink line	0.080		10			4	8
						circular line	0.109	141
1jxl	pd0252	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.123		10			5	7
						circular line	0.133	122
1l5u	pd0304	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.127		10			5	6
						circular line	0.158	116
1llm	pd0312	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.138		14			6	6
						circular line	0.143	86
1lu5	dd0050	E   |    H   |    B	12	nuc	diff	single-kink line	0.175		27			6	6
						circular line	0.184	39
1m6x	pd0336	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.153		19			5	7
						circular line	0.272	66
1ndn	bdl032	E   |    H   |    B	12	nuc	diff	single-kink line	0.212		9			4	8
						circular line	0.278	216
						straight line	0.321
1nk9	pd0382	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.306		30			6	6
						circular line	0.330	39
1p4e	pd0425	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.159		20			5	7
						circular line	0.342	66
1pgc	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.338		22			8	4
						circular line	0.519	66
1qms	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.018		7			7	5
						circular line	0.026	181
						straight line	0.132
1qss	pd0066	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.287		17			5	7
						circular line	0.458	77
1qsx	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.065		12			7	5
						circular line	0.127	109
1qv8	dd0060	E   |    H   |    B	12	nuc	diff	single-kink line	0.067		8			5	7
						circular line	0.071	162
						straight line	0.257
1qxb	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.173		13			6	6
						circular line	0.188	87
1sdr	arl062	E   |    H   |    B	12	nuc	diff	single-kink line	0.102		16			6	6
						circular line	0.144	64
1ttd	------	E   |    H   |    B	12	nuc	NMR	single-kink line	0.190		23			6	6
						circular line	0.292	56
218d	bdlb58	E   |    H   |    B	12	nuc	diff	single-kink line	0.145		21			5	7
						circular line	0.187	61
227d	gdl036	E   |    H   |    B	12	nuc	diff	single-kink line	0.035		10			4	8
						circular line	0.079	163
268d	gdlb42	E   |    H   |    B	12	nuc	diff	single-kink line	0.067		9			5	7
						circular line	0.079	141
289d	gdl045	E   |    H   |    B	12	nuc	diff	single-kink line	0.079		11			4	8
						circular line	0.112	130
2bna	bdl002	E   |    H   |    B	12	nuc	diff	single-kink line	0.067		11			4	8
						circular line	0.094	139
2dbe	gdl009	E   |    H   |    B	12	nuc	diff	single-kink line	0.061		9			4	8
						circular line	0.095	187
						straight line	0.230
2ezf	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.072		6			8	4
						circular line	0.074	276
						straight line	0.179
2ezg	------	E   |    H   |    B	12	prot-nuc	NMR	single-kink line	0.069		11			3	9
						circular line	0.176	238
311d	gdl052	E   |    H   |    B	12	nuc	diff	single-kink line	0.052		10			4	8
						circular line	0.102	156
360d	gdl056	E   |    H   |    B	12	nuc	diff	single-kink line	0.088		12			4	8
						circular line	0.125	123
388d	bdlb84	E   |    H   |    B	12	nuc	diff	single-kink line	0.076		11			4	8
						circular line	0.130	140
389d	bdlb85	E   |    H   |    B	12	nuc	diff	single-kink line	0.080		12			4	8
						circular line	0.085	117
3hts	pd0073	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.080		9			6	6
						circular line	0.117	138
3pvi	pd0006	E   |    H   |    B	12	prot-nuc	diff	single-kink line	0.870		12			7	5
						circular line	0.976	127
442d	dd0003	E   |    H   |    B	12	nuc	diff	single-kink line	0.331		20			8	4
						circular line	0.406	80
443d	dd0004	E   |    H   |    B	12	nuc	diff	single-kink line	0.267		20			8	4
						circular line	0.355	79
444d	dd0005	E   |    H   |    B	12	nuc	diff	single-kink line	0.044		8			4	8
						circular line	0.058	184
						straight line	0.209
468d	ar0016	E   |    H   |    B	12	nuc	diff	single-kink line	0.047		5			8	4
						circular line	0.055	251
						straight line	0.060
469d	ar0015	E   |    H   |    B	12	nuc	diff	single-kink line	0.043		6			8	4
						circular line	0.055	177
						straight line	0.079
470d	ar0017	E   |    H   |    B	12	nuc	diff	single-kink line	0.097		6			5	6
						circular line	0.106	166
						straight line	0.128
471d	ar0018	E   |    H   |    B	12	nuc	diff	single-kink line	0.121		8			7	5
						circular line	0.152	146
						straight line	0.183
4dnb	bdlb13	E   |    H   |    B	12	nuc	diff	single-kink line	0.078		14			5	7
						circular line	0.103	91
6bna	gdlb05	E   |    H   |    B	12	nuc	diff	single-kink line	0.063		10			6	6
						circular line	0.064	127
9bna	bdl020	E   |    H   |    B	12	nuc	diff	single-kink line	0.066		12			5	7
						circular line	0.068	109

Abbreviations