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(-) Description

Title :  FARNESYLATED RHOA-GDP IN COMPLEX WITH RHOGDI-ALPHA, LYSINE ACETYLATED AT K178
 
Authors :  N. Kuhlmann, S. Wroblowski, P. Knyphausen, S. De Boor, J. Brenig, A. Y. K. Meyer-Teschendorf, G. J. K. Praefcke, H. Nolte, M. Krueger, M. Scha U. Baumann, L. C. James, J. W. Chin, M. Lammers
Date :  15 Dec 15  (Deposition) - 13 Jan 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Signaling Protein, Lysine-Acetylation, Rhoa, Ras-Superfamily, Rhogdi, Cytoskeleton, Gdp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kuhlmann, S. Wroblowski, P. Knyphausen, S. De Boor, J. Brenig, A. Y. Zienert, K. Meyer-Teschendorf, G. J. K. Praefcke, H. Nolte, M. Kruger, M. Schacherl, U. Baumann, L. C. James, J. W. Chin, M. Lammers
Structural And Mechanistic Insights Into The Regulation Of The Fundamental Rho-Regulator Rhogdi Alpha By Lysine Acetylation.
J. Biol. Chem. V. 291 5484 2016
PubMed-ID: 26719334  |  Reference-DOI: 10.1074/JBC.M115.707091

(-) Compounds

Molecule 1 - TRANSFORMING PROTEIN RHOA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THIOESTER BETWEEN CYS190 AND FARNESYL-MOIETY
    Synonym: RHO CDNA CLONE 12, H12, RHOA
 
Molecule 2 - RHO GDP-DISSOCIATION INHIBITOR 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCDF-DUET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: LYSINE-ACETYLATED AT K178
    Synonym: RHO GDI 1, RHO-GDI ALPHA, RHOGDI-ALPHA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric/Biological Unit (5, 5)
No.NameCountTypeFull Name
1ALY1Mod. Amino AcidN(6)-ACETYLLYSINE
2BGC1Ligand/IonBETA-D-GLUCOSE
3FAR1Ligand/IonFARNESYL
4GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
5MG1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:190 , LEU B:77 , LEU B:86 , GLU B:87 , PHE B:102 , LEU B:104 , TYR B:110 , ILE B:112 , GLN B:130 , TRP B:194 , LEU B:196BINDING SITE FOR RESIDUE FAR A1190
2AC2SOFTWAREALA A:15 , CYS A:16 , GLY A:17 , LYS A:18 , THR A:19 , CYS A:20 , PHE A:30 , LYS A:118 , ASP A:120 , LEU A:121 , ASP A:124 , SER A:160 , ALA A:161 , LYS A:162 , MG A:1193 , HOH A:2003 , HOH A:2004 , HOH A:2009BINDING SITE FOR RESIDUE GDP A1192
3AC3SOFTWARETHR A:19 , PRO A:36 , THR A:37 , GDP A:1192 , HOH A:2004BINDING SITE FOR RESIDUE MG A1193
4AC4SOFTWAREPRO B:68 , ASN B:69 , VAL B:70 , ARG B:74 , GLU B:87 , ASP B:89 , ARG B:120 , THR B:187BINDING SITE FOR RESIDUE BGC B1206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FR2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val B:25 -Asn B:26

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FR2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FR2)

(-) Exons   (0, 0)

(no "Exon" information available for 5FR2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhhh.............eeeeeee..eeeeeeeee...hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhh....hhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fr2 A   1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAKKSGCL 191
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180||     
                                                                                                                                                                                                              181|     
                                                                                                                                                                                                               186     


Chain B from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhh...hhhhhhhhhhhh...........eeeeeeeeee......eeee...hhhhhhh..eeee...eeeeeeeeee....eeeeeeeeeee....eeeeeeeeeeee........ee...ee........eeeeeeeeee.....eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fr2 B  25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIkSRFTDDDRTDHLSWEWNLTIKKEWKD 204
                                    34        44        54   ||   66        76        86        96       106       116       126       136       146       156       166       176 |     186       196        
                                                            58|                                                                                                                  178-ALY                      
                                                             61
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FR2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FR2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FR2)

(-) Gene Ontology  (76, 79)

Asymmetric/Biological Unit(hide GO term definitions)

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    Val B:25 - Asn B:26   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GDIR1_BOVIN | P19803: 1ajw 1doa 1gdf 5fr1
        RHOA_HUMAN | P61586: 1a2b 1cc0 1cxz 1dpf 1ftn 1kmq 1lb1 1ow3 1s1c 1tx4 1x86 1xcg 2rgn 3kz1 3lw8 3lwn 3lxr 3msx 3t06 4d0n 4xh9 4xoi 4xsg 4xsh 5a0f 5bwm 5c2k 5c4m 5ez6 5fr1 5hpy 5irc 5jcp 5jhg 5jhh 5m6x 5m70

(-) Related Entries Specified in the PDB File

5fr1 DOUBLE ACETYLATED RHOGDI-ALPHA IN COMPLEX WITH RHOA- GDP