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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN RHOGAP MUTATED IN ITS ARGININE FINGER (R85A) IN COMPLEX WITH RHOA.GDP.MGF3- HUMAN
 
Authors :  E. Pellegrini, M. W. Bowler
Date :  26 Oct 16  (Deposition) - 17 May 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,H,I
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  H,I  (1x)
Keywords :  Rhogap, Arginine Finger, Rhoa, Transition State, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Pellegrini, M. W. Bowler
Crystal Structure Of Human Rhogap Mutated In Its Arginin Finger (R85A) In Complex With Rhoa. Gdp. Mgf3- Human
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RHO GTPASE-ACTIVATING PROTEIN 1
    Chains: A, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ARHGAP1, CDC42GAP, RHOGAP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CDC42 GTPASE-ACTIVATING PROTEIN,GTPASE-ACTIVATING PROTEIN RHOGAP,RHO-RELATED SMALL GTPASE PROTEIN ACTIVATOR,RHO-TYPE GTPASE- ACTIVATING PROTEIN 1,P50-RHOGAP
 
Molecule 2 - TRANSFORMING PROTEIN RHOA
    Chains: B, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RHOA, ARH12, ARHA, RHO12
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RHO CDNA CLONE 12,H12

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABHI
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   HI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3MGF2Ligand/IonTRIFLUOROMAGNESATE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MGF1Ligand/IonTRIFLUOROMAGNESATE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MGF1Ligand/IonTRIFLUOROMAGNESATE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR B:19 , THR B:37 , GDP B:202 , MGF B:203 , HOH B:301 , HOH B:306binding site for residue MG B 201
2AC2SOFTWARELYS A:189 , HOH A:311 , ALA B:15 , CYS B:16 , GLY B:17 , LYS B:18 , THR B:19 , CYS B:20 , PHE B:30 , TYR B:34 , LYS B:118 , ASP B:120 , LEU B:121 , SER B:160 , ALA B:161 , LYS B:162 , MG B:201 , MGF B:203 , HOH B:301 , HOH B:306 , HOH B:315 , HOH B:316binding site for residue GDP B 202
3AC3SOFTWAREGLY B:14 , LYS B:18 , TYR B:34 , PRO B:36 , THR B:37 , GLY B:62 , GLN B:63 , MG B:201 , GDP B:202 , HOH B:301 , HOH B:306 , HOH B:309binding site for residue MGF B 203
4AC4SOFTWARETHR I:19 , THR I:37 , GDP I:202 , MGF I:203 , HOH I:306 , HOH I:314binding site for residue MG I 201
5AC5SOFTWARELYS H:189 , ALA I:15 , CYS I:16 , GLY I:17 , LYS I:18 , THR I:19 , CYS I:20 , PHE I:30 , TYR I:34 , LYS I:118 , ASP I:120 , LEU I:121 , SER I:160 , ALA I:161 , LYS I:162 , MG I:201 , MGF I:203 , HOH I:303 , HOH I:306 , HOH I:314 , HOH I:316 , HOH I:328binding site for residue GDP I 202
6AC6SOFTWAREGLY I:14 , ALA I:15 , LYS I:18 , TYR I:34 , PRO I:36 , THR I:37 , GLY I:62 , GLN I:63 , MG I:201 , GDP I:202 , HOH I:306 , HOH I:311 , HOH I:314binding site for residue MGF I 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5M6X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5M6X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M6X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M6X)

(-) Exons   (0, 0)

(no "Exon" information available for 5M6X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m6x A  43 QQFGVSLQHLQEKNPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF 234
                                    52   ||   66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226        
                                        56|                                                                                                                                                                             
                                         61                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m6x B   3 AIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172        


Chain H from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh..hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m6x H  43 QQFGVSLQHLQEKPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF 234
                                    52  ||    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       
                                       55|                                                                                                                                                                             
                                        61                                                                                                                                                                             


Chain I from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhhh..........eeeeeeeee....eeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhh......hhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m6x I   4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA 181
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M6X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M6X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M6X)

(-) Gene Ontology  (75, 82)

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  RHOA_HUMAN | P61586
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RHG01_HUMAN | Q07960: 1am4 1grn 1ow3 1rgp 1tx4 2ngr 5m70
        RHOA_HUMAN | P61586: 1a2b 1cc0 1cxz 1dpf 1ftn 1kmq 1lb1 1ow3 1s1c 1tx4 1x86 1xcg 2rgn 3kz1 3lw8 3lwn 3lxr 3msx 3t06 4d0n 4xh9 4xoi 4xsg 4xsh 5a0f 5bwm 5c2k 5c4m 5ez6 5fr1 5fr2 5hpy 5irc 5jcp 5jhg 5jhh 5m70

(-) Related Entries Specified in the PDB File

5c4m 5C4M SHOWS THE STRUCTURE OF ONE OF THE TWO PROTEINS, IN COMPLEX FOR THIS ENTRY