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(-) Description

Title :  CRYSTAL STRUCTURE OF YERSINIA AFP18-MODIFIED RHOA
 
Authors :  T. Jank, M. Schimpl, D. Van Aalten
Date :  20 Apr 15  (Deposition) - 22 Jul 15  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Signaling Protein, N-Acetylglucosamine-Protein, Tyrosine Glycosylation, Gtpase, Bacterial Toxin Effector, Type 6 Secretion System, Antifeeding Prophage (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Jank, S. Eckerle, M. Steinemann, C. Trillhaase, M. Schimpl, S. Wiese, D. M. Van Aalten, W. Driever, K. Aktories
Tyrosine Glycosylation Of Rho By Yersinia Toxin Impairs Blastomere Cell Behaviour In Zebrafish Embryos.
Nat. Commun. V. 6 7807 2015
PubMed-ID: 26190758  |  Reference-DOI: 10.1038/NCOMMS8807

(-) Compounds

Molecule 1 - TRANSFORMING PROTEIN RHOA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: RESIDUES 1-181
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: GLYCOSYLATION AT Y 34
    Synonym: RAS-LIKE GTP-BINDING PROTEIN RHO, RHO CDNA CLONE 12, H12

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
3SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:51 , TYR A:66 , ASP A:67 , ARG A:68 , LEU A:69 , HOH A:2041BINDING SITE FOR RESIDUE SO4 A 1181
2AC2SOFTWAREALA A:15 , CYS A:16 , GLY A:17 , LYS A:18 , THR A:19 , CYS A:20 , ALA A:61 , LYS A:118 , ASP A:120 , LEU A:121 , SER A:160 , ALA A:161 , LYS A:162 , HOH A:2011 , HOH A:2036 , HOH A:2080BINDING SITE FOR RESIDUE GDP A 200
3AC3SOFTWARETYR A:34 , VAL A:35 , PRO A:36 , THR A:37 , GLU A:40 , LEU A:69 , SER A:73 , HOH A:2024 , HOH A:2025 , HOH A:2039BINDING SITE FOR RESIDUE NDG A 2501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A0F)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:30 -Pro A:31

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A0F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A0F)

(-) Exons   (0, 0)

(no "Exon" information available for 5A0F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhh.............eeeeeee..eeeeeeeee.........hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhh......hhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a0f A   3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A0F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A0F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A0F)

(-) Gene Ontology  (68, 68)

Asymmetric/Biological Unit(hide GO term definitions)

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    Phe A:30 - Pro A:31   [ RasMol ]  
 

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  5a0f
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  RHOA_HUMAN | P61586
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RHOA_HUMAN | P61586: 1a2b 1cc0 1cxz 1dpf 1ftn 1kmq 1lb1 1ow3 1s1c 1tx4 1x86 1xcg 2rgn 3kz1 3lw8 3lwn 3lxr 3msx 3t06 4d0n 4xh9 4xoi 4xsg 4xsh 5bwm 5c2k 5c4m 5ez6 5fr1 5fr2 5hpy 5irc 5jcp 5jhg 5jhh 5m6x 5m70

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5A0F)