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(-) Description

Title :  DOUBLE ACETYLATED RHOGDI-ALPHA IN COMPLEX WITH RHOA-GDP
 
Authors :  N. Kuhlmann, S. Wroblowski, M. Lammers
Date :  15 Dec 15  (Deposition) - 13 Jan 16  (Release) - 03 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Signaling Protein, Ras-Superfamily, Guanine-Nucleotide-Binding Protein, Molecular Switch, Actin-Cytoskeleton Rhogdi-Alpha, Nucleotide Dissociation, Prenylation, Lysine-Acetylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kuhlmann, S. Wroblowski, L. Scislowski, M. Lammers
Rhogdi Alpha Acetylation At K127 And K141 Affects Binding Towards Non-Prenylated Rhoa.
Biochemistry V. 55 304 2016
PubMed-ID: 26695096  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01242

(-) Compounds

Molecule 1 - TRANSFORMING PROTEIN RHOA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PGEX
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: GDP-BOUND
    Synonym: RHOA, RHO CDNA CLONE 12, H12
 
Molecule 2 - RHO GDP-DISSOCIATION INHIBITOR 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: RSF-DUET
    Expression System Vector Type: PLASMID
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: LYSINE-ACETYLATED AT K127 AND K141
    Synonym: RHOGDI-ALPHA, RHO GDI 1, RHO-GDI ALPHA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1ALY2Mod. Amino AcidN(6)-ACETYLLYSINE
2GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
3MG3Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:13 , ALA A:15 , CYS A:16 , GLY A:17 , LYS A:18 , THR A:19 , CYS A:20 , PHE A:30 , VAL A:35 , LYS A:118 , ASP A:120 , LEU A:121 , SER A:160 , ALA A:161 , LYS A:162 , MG A:1195 , HOH A:2003 , HOH A:2005BINDING SITE FOR RESIDUE GDP A1194
2AC2SOFTWARETHR A:19 , THR A:37 , GDP A:1194 , HOH A:2004 , HOH A:2005BINDING SITE FOR RESIDUE MG A1195
3AC3SOFTWAREVAL A:43 , ASP A:45BINDING SITE FOR RESIDUE MG A1196
4AC4SOFTWAREARG B:117 , VAL B:118 , ARG B:152 , GLU B:154BINDING SITE FOR RESIDUE MG B1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FR1)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe B:97 -Lys B:98

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FR1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FR1)

(-) Exons   (0, 0)

(no "Exon" information available for 5FR1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhhhhh.............eeeeee....eeeeeee....hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhh......hhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhhh...eee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fr1 A   4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQASGCLVL 193
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       189    
                                                                                                                                                                                                           181|     
                                                                                                                                                                                                            188     


Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh...hhhhhhhhhhhh...eeeeeeeee........eee...hhhhh....eeee...eeeeeeeeee....eeeeeeeeeeee..eeeeeeeeeeeee......eeee...ee...hhhhheeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fr1 B  26 NYKPPAQKSIQEIQELDKDDESLRKYKEALLVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMkYIQHTYRKGVKIDkTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 202
                                    35        45        55||      75        85        95       105       115       125 |     135     | 145       155       165       175       185       195       
                                                         56|                                                         127-ALY       141-ALY                                                         
                                                          67
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FR1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FR1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FR1)

(-) Gene Ontology  (76, 79)

Asymmetric/Biological Unit(hide GO term definitions)

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    Phe B:97 - Lys B:98   [ RasMol ]  
 

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  RHOA_HUMAN | P61586
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GDIR1_BOVIN | P19803: 1ajw 1doa 1gdf 5fr2
        RHOA_HUMAN | P61586: 1a2b 1cc0 1cxz 1dpf 1ftn 1kmq 1lb1 1ow3 1s1c 1tx4 1x86 1xcg 2rgn 3kz1 3lw8 3lwn 3lxr 3msx 3t06 4d0n 4xh9 4xoi 4xsg 4xsh 5a0f 5bwm 5c2k 5c4m 5ez6 5fr2 5hpy 5irc 5jcp 5jhg 5jhh 5m6x 5m70

(-) Related Entries Specified in the PDB File

5fr2 FARNESYLATED RHOA-GDP IN COMPLEX WITH RHOGDI-ALPHA, LYSINE ACETYLATED AT K178