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(-) Description

Title :  P190A GAP DOMAIN COMPLEX WITH RHOA
 
Authors :  U. Derewenda, Z. Derewenda
Date :  12 Mar 16  (Deposition) - 17 Aug 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym. Unit :  A,B,D,F
Biol. Unit 1:  A,F  (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  A (1x),B (1x),D (1x),F (1x)
Keywords :  Protein-Protein Complex, Transition State, Gtpase, Gap Domain, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Amin, M. Jaiswal, U. Derewenda, K. Reis, K. Nouri, K. T. Koessmeier, P. Aspenstrom, A. V. Somlyo, R. Dvorsky, M. R. Ahmadian
Deciphering The Molecular And Functional Basis Of Rhogap Family Proteins: A Systematic Approach Toward Selective Inactivation Of Rho Family Proteins.
J. Biol. Chem. V. 291 20353 2016
PubMed-ID: 27481945  |  Reference-DOI: 10.1074/JBC.M116.736967

(-) Compounds

Molecule 1 - RHO GTPASE-ACTIVATING PROTEIN 35
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: ARHGAP35, GRLF1
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GAP-ASSOCIATED PROTEIN P190,GLUCOCORTICOID RECEPTOR DNA- BINDING FACTOR 1
 
Molecule 2 - TRANSFORMING PROTEIN RHOA
    Chains: F, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: RHOA, ARH12, ARHA, RHO12
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RHO CDNA CLONE 12,H12

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABDF
Biological Unit 1 (1x): A  F
Biological Unit 2 (1x):  BD 
Biological Unit 3 (1x): A (1x)B (1x)D (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric Unit (5, 13)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2CSX4Mod. Amino AcidS-OXY CYSTEINE
3GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4MG2Ligand/IonMAGNESIUM ION
5MGF2Ligand/IonTRIFLUOROMAGNESATE
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CSX2Mod. Amino AcidS-OXY CYSTEINE
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4MG-1Ligand/IonMAGNESIUM ION
5MGF1Ligand/IonTRIFLUOROMAGNESATE
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CSX2Mod. Amino AcidS-OXY CYSTEINE
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4MG-1Ligand/IonMAGNESIUM ION
5MGF1Ligand/IonTRIFLUOROMAGNESATE
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CSX2Mod. Amino AcidS-OXY CYSTEINE
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4MG-1Ligand/IonMAGNESIUM ION
5MGF1Ligand/IonTRIFLUOROMAGNESATE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:1431 , PHE A:1434 , GLN B:1431 , PHE B:1434binding site for residue CL A 1501
2AC2SOFTWARELEU A:1251 , ASP A:1330 , HOH A:1606 , HOH A:1731binding site for residue CL A 1502
3AC3SOFTWAREARG A:1284 , HOH A:1651 , ALA F:15 , CYS F:16 , GLY F:17 , LYS F:18 , THR F:19 , CSX F:20 , TYR F:34 , LYS F:118 , ASP F:120 , LEU F:121 , SER F:160 , ALA F:161 , LYS F:162 , MG F:202 , MGF F:203 , HOH F:315 , HOH F:318 , HOH F:338 , HOH F:347 , HOH F:364 , HOH F:368 , HOH F:411 , HOH F:417 , HOH F:425binding site for residue GDP F 201
4AC4SOFTWARETHR F:19 , THR F:37 , GDP F:201 , MGF F:203 , HOH F:318 , HOH F:338binding site for residue MG F 202
5AC5SOFTWAREARG A:1284 , GLY F:14 , ALA F:15 , LYS F:18 , PRO F:36 , THR F:37 , GLY F:62 , GLN F:63 , GDP F:201 , MG F:202 , HOH F:308 , HOH F:318 , HOH F:338binding site for residue MGF F 203
6AC6SOFTWARELEU B:1251 , ASP B:1330 , HOH B:1624 , HOH B:1750binding site for residue CL B 1501
7AC7SOFTWAREARG B:1284 , HOH B:1620 , ALA D:15 , CYS D:16 , GLY D:17 , LYS D:18 , THR D:19 , CSX D:20 , TYR D:34 , LYS D:118 , ASP D:120 , LEU D:121 , SER D:160 , ALA D:161 , LYS D:162 , MG D:202 , MGF D:203 , HOH D:302 , HOH D:339 , HOH D:360 , HOH D:366 , HOH D:371 , HOH D:393binding site for residue GDP D 201
8AC8SOFTWARETHR D:19 , THR D:37 , GDP D:201 , MGF D:203 , HOH D:302 , HOH D:339binding site for residue MG D 202
9AC9SOFTWAREARG B:1284 , GLY D:14 , ALA D:15 , LYS D:18 , PRO D:36 , THR D:37 , GLY D:62 , GLN D:63 , GDP D:201 , MG D:202 , HOH D:301 , HOH D:302 , HOH D:339binding site for residue MGF D 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IRC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IRC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IRC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IRC)

(-) Exons   (0, 0)

(no "Exon" information available for 5IRC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                          
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.....hhhhhh......hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5irc A 1239 AGSWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNRVSHNNKVNLMTSENLSICFWPTLMRPDFSSMDALTATRSYQTIIELFIQQcPFFFYNR 1439
                                  1248      1258      1268      1278      1288      1298      1308      1318      1328      1338      1348      1358      1368      1378      1388      1398      1408      1418      1428   |  1438 
                                                                                                                                                                                                                          1432-CSX   


Chain B from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh......hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5irc B 1243 ESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNRVSHNNKVNLMTSENLSICFWPTLMRPDFSSMDALTATRSYQTIIELFIQQcPFFFYN 1438
                                  1252      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      
                                                                                                                                                                                                                      1432-CSX  


Chain D from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhh......eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhh......hhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5irc D    4 IRKKLVIVGDGACGKTcLLIVNVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA  181
                                    13      | 23 ||     40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 
                                           20-CSX5|                                                                                                                                                    
                                                 33                                                                                                                                                    


Chain F from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhhhhh......eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhh......hhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5irc F    4 IRKKLVIVGDGACGKTcLLIVNVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ  180
                                    13      | 23 ||     40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
                                           20-CSX5|                                                                                                                                                   
                                                 33
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IRC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IRC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IRC)

(-) Gene Ontology  (78, 82)

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  RHOA_HUMAN | P61586
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 Related Entries

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UniProtKB/Swiss-Prot
        RHOA_HUMAN | P61586: 1a2b 1cc0 1cxz 1dpf 1ftn 1kmq 1lb1 1ow3 1s1c 1tx4 1x86 1xcg 2rgn 3kz1 3lw8 3lwn 3lxr 3msx 3t06 4d0n 4xh9 4xoi 4xsg 4xsh 5a0f 5bwm 5c2k 5c4m 5ez6 5fr1 5fr2 5hpy 5jcp 5jhg 5jhh 5m6x 5m70

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